Ggra543.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra543.t1
Unique NameGgra543.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000153_piloncontigtig00000153_pilon:17934..19196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra543Ggra543Gracilaria gracilis GNS1m malegenetig00000153_pilon 17934..19196 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra543.t1.stop1Ggra543.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000153_pilon 17934..17936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra543.t1.CDS1Ggra543.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000153_pilon 17934..19196 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra543.t1.exon1Ggra543.t1.exon1Gracilaria gracilis GNS1m maleexontig00000153_pilon 17934..19196 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra543.t1.start1Ggra543.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000153_pilon 19194..19196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra543.t1Ggra543.t1Gracilaria gracilis GNS1m malepolypeptidetig00000153_pilon 17934..19196 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra543.t1 ID=Ggra543.t1|Name=Ggra543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MAHPSTSFSSDGESFSLPKTHGVKRLREARDGDCKSKRHKVSQESWSQSD
SLDGSAEALQRKDSLFGDSAASDHESLRLYGAHWRKELKEVPEHHCRSTR
NKWWRASGFDDSLEVQPRNGGLLRDCAPSDQKSMSSTGICEPKRVKVRGV
ASKLPRYRSVNERSYPRPPGYDRRQRRYPLQQNPEWGFPDNDVFSSGALS
SSDDQGSLKTSYKSREGKVKGSDEFHSKSDVVDLTGDTEDEVEEVPSTTQ
ACWIVWMKHLKKTKPRIFCSNTARLKIRKKASRGRSAYDGIGVTEANCDG
LRAVLQYQCSTRKWSTEFMKKKDIKGVSTTVSQFLRWVVARRSAEEHEVW
RQDCLFDNIFKLPLIQEFLEYFVDCCENRTVHQKIDCLLLVCRAALHTDR
RRYKPRYRKVVSFLEGFHPQ*
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spliced messenger RNA

>Ggra543.t1 ID=Ggra543.t1|Name=Ggra543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000153_pilon:17934..19196- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGGAATCCTGGTCGCAAAGCGAT
AGTCTAGATGGTTCGGCAGAAGCGTTGCAGAGAAAGGATTCGTTGTTTGG
GGATTCTGCTGCATCAGATCATGAATCTCTGCGGCTTTATGGGGCTCACT
GGAGGAAGGAACTGAAAGAGGTACCTGAACATCATTGTCGTTCTACACGT
AACAAGTGGTGGCGCGCTTCTGGCTTCGATGATTCTTTAGAAGTGCAGCC
AAGAAACGGAGGTTTATTACGGGACTGTGCGCCATCGGATCAAAAATCGA
TGTCTTCTACAGGAATTTGCGAACCCAAGCGGGTGAAGGTGAGGGGAGTT
GCCTCCAAGCTTCCACGATATCGCTCAGTGAATGAAAGATCATATCCCAG
GCCCCCCGGATATGATCGTCGCCAACGTCGCTATCCGCTTCAGCAGAATC
CAGAATGGGGATTTCCAGATAATGATGTGTTTTCGTCGGGCGCTCTATCT
TCCTCTGATGATCAGGGTTCACTGAAAACAAGTTACAAAAGCAGAGAGGG
CAAGGTGAAAGGCAGTGATGAGTTTCATTCGAAATCTGATGTAGTGGATT
TGACGGGTGATACGGAAGATGAAGTTGAAGAAGTCCCTTCAACTACTCAA
GCCTGTTGGATCGTTTGGATGAAGCATCTGAAGAAAACGAAACCGCGCAT
ATTTTGCAGTAACACAGCTCGCCTTAAGATTCGAAAGAAAGCCAGCCGAG
GAAGGTCTGCTTACGATGGGATCGGCGTGACAGAAGCAAACTGTGATGGT
CTACGAGCAGTTCTTCAATATCAGTGTTCCACCAGGAAATGGTCTACTGA
GTTCATGAAGAAGAAGGACATAAAGGGTGTTTCGACGACTGTCTCCCAGT
TTCTTCGTTGGGTTGTTGCGAGACGTTCTGCGGAGGAGCATGAAGTCTGG
AGACAGGATTGTCTCTTCGATAATATTTTCAAACTACCTCTCATACAGGA
GTTTCTCGAGTACTTCGTGGATTGTTGTGAGAACAGGACTGTGCACCAGA
AGATAGATTGCTTATTACTCGTCTGTAGAGCTGCTCTTCATACTGACAGA
AGGAGATACAAGCCAAGGTACAGAAAAGTTGTGTCATTTCTTGAAGGCTT
TCACCCTCAGTAA
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protein sequence of Ggra543.t1

>Ggra543.t1 ID=Ggra543.t1|Name=Ggra543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MAHPSTSFSSDGESFSLPKTHGVKRLREARDGDCKSKRHKVSQESWSQSD
SLDGSAEALQRKDSLFGDSAASDHESLRLYGAHWRKELKEVPEHHCRSTR
NKWWRASGFDDSLEVQPRNGGLLRDCAPSDQKSMSSTGICEPKRVKVRGV
ASKLPRYRSVNERSYPRPPGYDRRQRRYPLQQNPEWGFPDNDVFSSGALS
SSDDQGSLKTSYKSREGKVKGSDEFHSKSDVVDLTGDTEDEVEEVPSTTQ
ACWIVWMKHLKKTKPRIFCSNTARLKIRKKASRGRSAYDGIGVTEANCDG
LRAVLQYQCSTRKWSTEFMKKKDIKGVSTTVSQFLRWVVARRSAEEHEVW
RQDCLFDNIFKLPLIQEFLEYFVDCCENRTVHQKIDCLLLVCRAALHTDR
RRYKPRYRKVVSFLEGFHPQ*
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mRNA from alignment at tig00000153_pilon:17934..19196-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra543.t1 ID=Ggra543.t1|Name=Ggra543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000153_pilon:17934..19196- (Gracilaria gracilis GNS1m male)
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGGAATCCTGGTCGCAAAGCGAT
AGTCTAGATGGTTCGGCAGAAGCGTTGCAGAGAAAGGATTCGTTGTTTGG
GGATTCTGCTGCATCAGATCATGAATCTCTGCGGCTTTATGGGGCTCACT
GGAGGAAGGAACTGAAAGAGGTACCTGAACATCATTGTCGTTCTACACGT
AACAAGTGGTGGCGCGCTTCTGGCTTCGATGATTCTTTAGAAGTGCAGCC
AAGAAACGGAGGTTTATTACGGGACTGTGCGCCATCGGATCAAAAATCGA
TGTCTTCTACAGGAATTTGCGAACCCAAGCGGGTGAAGGTGAGGGGAGTT
GCCTCCAAGCTTCCACGATATCGCTCAGTGAATGAAAGATCATATCCCAG
GCCCCCCGGATATGATCGTCGCCAACGTCGCTATCCGCTTCAGCAGAATC
CAGAATGGGGATTTCCAGATAATGATGTGTTTTCGTCGGGCGCTCTATCT
TCCTCTGATGATCAGGGTTCACTGAAAACAAGTTACAAAAGCAGAGAGGG
CAAGGTGAAAGGCAGTGATGAGTTTCATTCGAAATCTGATGTAGTGGATT
TGACGGGTGATACGGAAGATGAAGTTGAAGAAGTCCCTTCAACTACTCAA
GCCTGTTGGATCGTTTGGATGAAGCATCTGAAGAAAACGAAACCGCGCAT
ATTTTGCAGTAACACAGCTCGCCTTAAGATTCGAAAGAAAGCCAGCCGAG
GAAGGTCTGCTTACGATGGGATCGGCGTGACAGAAGCAAACTGTGATGGT
CTACGAGCAGTTCTTCAATATCAGTGTTCCACCAGGAAATGGTCTACTGA
GTTCATGAAGAAGAAGGACATAAAGGGTGTTTCGACGACTGTCTCCCAGT
TTCTTCGTTGGGTTGTTGCGAGACGTTCTGCGGAGGAGCATGAAGTCTGG
AGACAGGATTGTCTCTTCGATAATATTTTCAAACTACCTCTCATACAGGA
GTTTCTCGAGTACTTCGTGGATTGTTGTGAGAACAGGACTGTGCACCAGA
AGATAGATTGCTTATTACTCGTCTGTAGAGCTGCTCTTCATACTGACAGA
AGGAGATACAAGCCAAGGTACAGAAAAGTTGTGTCATTTCTTGAAGGCTT
TCACCCTCAGTAA
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Coding sequence (CDS) from alignment at tig00000153_pilon:17934..19196-

>Ggra543.t1 ID=Ggra543.t1|Name=Ggra543.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000153_pilon:17934..19196- (Gracilaria gracilis GNS1m male)
ATGGCACACCCCAGCACCAGTTTCTCATCGGATGGTGAATCATTTTCATT
ACCGAAGACGCATGGGGTTAAGAGACTGAGGGAGGCACGTGATGGAGATT
GCAAATCTAAGCGTCACAAGGTGAGTCAGGAATCCTGGTCGCAAAGCGAT
AGTCTAGATGGTTCGGCAGAAGCGTTGCAGAGAAAGGATTCGTTGTTTGG
GGATTCTGCTGCATCAGATCATGAATCTCTGCGGCTTTATGGGGCTCACT
GGAGGAAGGAACTGAAAGAGGTACCTGAACATCATTGTCGTTCTACACGT
AACAAGTGGTGGCGCGCTTCTGGCTTCGATGATTCTTTAGAAGTGCAGCC
AAGAAACGGAGGTTTATTACGGGACTGTGCGCCATCGGATCAAAAATCGA
TGTCTTCTACAGGAATTTGCGAACCCAAGCGGGTGAAGGTGAGGGGAGTT
GCCTCCAAGCTTCCACGATATCGCTCAGTGAATGAAAGATCATATCCCAG
GCCCCCCGGATATGATCGTCGCCAACGTCGCTATCCGCTTCAGCAGAATC
CAGAATGGGGATTTCCAGATAATGATGTGTTTTCGTCGGGCGCTCTATCT
TCCTCTGATGATCAGGGTTCACTGAAAACAAGTTACAAAAGCAGAGAGGG
CAAGGTGAAAGGCAGTGATGAGTTTCATTCGAAATCTGATGTAGTGGATT
TGACGGGTGATACGGAAGATGAAGTTGAAGAAGTCCCTTCAACTACTCAA
GCCTGTTGGATCGTTTGGATGAAGCATCTGAAGAAAACGAAACCGCGCAT
ATTTTGCAGTAACACAGCTCGCCTTAAGATTCGAAAGAAAGCCAGCCGAG
GAAGGTCTGCTTACGATGGGATCGGCGTGACAGAAGCAAACTGTGATGGT
CTACGAGCAGTTCTTCAATATCAGTGTTCCACCAGGAAATGGTCTACTGA
GTTCATGAAGAAGAAGGACATAAAGGGTGTTTCGACGACTGTCTCCCAGT
TTCTTCGTTGGGTTGTTGCGAGACGTTCTGCGGAGGAGCATGAAGTCTGG
AGACAGGATTGTCTCTTCGATAATATTTTCAAACTACCTCTCATACAGGA
GTTTCTCGAGTACTTCGTGGATTGTTGTGAGAACAGGACTGTGCACCAGA
AGATAGATTGCTTATTACTCGTCTGTAGAGCTGCTCTTCATACTGACAGA
AGGAGATACAAGCCAAGGTACAGAAAAGTTGTGTCATTTCTTGAAGGCTT
TCACCCTCAGTAA
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