Ggra5422.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5422.t1
Unique NameGgra5422.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length344
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000842_piloncontigtig00000842_pilon:9104..10427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5422Ggra5422Gracilaria gracilis GNS1m malegenetig00000842_pilon 9104..10427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1Ggra5422.t1Gracilaria gracilis GNS1m malepolypeptidetig00000842_pilon 9104..10427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1.start1Ggra5422.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000842_pilon 9104..9106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1.CDS1Ggra5422.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000842_pilon 9104..9418 +
Ggra5422.t1.CDS2Ggra5422.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000842_pilon 9711..10427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1.exon1Ggra5422.t1.exon1Gracilaria gracilis GNS1m maleexontig00000842_pilon 9104..9418 +
Ggra5422.t1.exon2Ggra5422.t1.exon2Gracilaria gracilis GNS1m maleexontig00000842_pilon 9711..10427 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1.intron1Ggra5422.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000842_pilon 9419..9710 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5422.t1.stop1Ggra5422.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000842_pilon 10425..10427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5422.t1 ID=Ggra5422.t1|Name=Ggra5422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=344bp
MVEVHLHGRSGDGKTTLAALLAEHRGATPEQHKFVPDSGARSHTHDAKVF
FVHEYAISDNPGLLDTSGNKQEKRNLQKIVNHACKPKYIQAFVIVINMQS
PRLDYKPQIRTQKAIEGMYDSTQKVKEAQRMAAEEKKLKEEAERAANEQK
RLKEIAEQKEEVGRRKRAEAERVIEEGRRRKEEPQPDKEHAQCNMAEAEK
RLIGVLVETAQQRNEEMRSQMENAMRMAWLSRTTGAGNVMQYRTSAGDNE
PVVEEPVQVDIVEELAAVSSPAPASQALMSPYVLPYSLYVKRRRGLVGVF
GKGVHKLERVFMGNHGDGTPRKRGLWGSFAELLDRTDSRCRFL*
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spliced messenger RNA

>Ggra5422.t1 ID=Ggra5422.t1|Name=Ggra5422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1032bp|location=Sequence derived from alignment at tig00000842_pilon:9104..10427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACAAGCCACAAATACGGACACAGAAAGCGATAGAGGG
AATGTATGACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAG
AAGAGAAGAAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAG
CGTCTGAAGGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAG
AGCTGAAGCAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAAC
CCCAACCAGACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAG
CGCCTGATTGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGAT
GAGATCGCAGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGA
CTGGAGCGGGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAA
CCAGTGGTTGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGC
TGTTTCGTCTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTT
TGCCTTACAGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTT
GGAAAAGGAGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGA
TGGAACGCCTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGG
ATAGAACCGACTCCCGTTGCAGATTTCTTTAG
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protein sequence of Ggra5422.t1

>Ggra5422.t1 ID=Ggra5422.t1|Name=Ggra5422.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=344bp
MVEVHLHGRSGDGKTTLAALLAEHRGATPEQHKFVPDSGARSHTHDAKVF
FVHEYAISDNPGLLDTSGNKQEKRNLQKIVNHACKPKYIQAFVIVINMQS
PRLDYKPQIRTQKAIEGMYDSTQKVKEAQRMAAEEKKLKEEAERAANEQK
RLKEIAEQKEEVGRRKRAEAERVIEEGRRRKEEPQPDKEHAQCNMAEAEK
RLIGVLVETAQQRNEEMRSQMENAMRMAWLSRTTGAGNVMQYRTSAGDNE
PVVEEPVQVDIVEELAAVSSPAPASQALMSPYVLPYSLYVKRRRGLVGVF
GKGVHKLERVFMGNHGDGTPRKRGLWGSFAELLDRTDSRCRFL*
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mRNA from alignment at tig00000842_pilon:9104..10427+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5422.t1 ID=Ggra5422.t1|Name=Ggra5422.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1324bp|location=Sequence derived from alignment at tig00000842_pilon:9104..10427+ (Gracilaria gracilis GNS1m male)
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACGTATGCAGAATGCCATCCAGTTGCTCATTGATTAG
TTCGGAAAGGAAAGTCTTGGAGTTATCGCTATAGTATACACACGTGTATA
TGAGTTGGACGCCCCTAAACAATGTGAGGAGCATGCTAAACAAGTTGCAA
GCATTATCCAAAAGCGTTGCAATCTTTCACAGACTCCGCGCTTTCCGAGC
TACTGTGTTGAAGCACATCCCACCCCTCTCCTGAGAGACGAGACCGTGCA
AATGATCAAGGAAAGAACAACGCAGCACATTGATGACTTGCTTCGTTGGG
CATGCAGAAGCCACAAATACGGACACAGAAAGCGATAGAGGGAATGTATG
ACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAGAAGAGAAG
AAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAGCGTCTGAA
GGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAGAGCTGAAG
CAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAACCCCAACCA
GACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAGCGCCTGAT
TGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGATGAGATCGC
AGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGACTGGAGCG
GGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAACCAGTGGT
TGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGCTGTTTCGT
CTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTTTGCCTTAC
AGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTTGGAAAAGG
AGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGATGGAACGC
CTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGGATAGAACC
GACTCCCGTTGCAGATTTCTTTAG
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Coding sequence (CDS) from alignment at tig00000842_pilon:9104..10427+

>Ggra5422.t1 ID=Ggra5422.t1|Name=Ggra5422.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1032bp|location=Sequence derived from alignment at tig00000842_pilon:9104..10427+ (Gracilaria gracilis GNS1m male)
ATGGTTGAAGTGCATCTACACGGCCGCAGTGGCGACGGCAAAACCACTCT
TGCTGCCTTGCTTGCTGAGCACAGAGGTGCAACGCCCGAACAACACAAGT
TCGTTCCCGACAGCGGAGCGCGTTCTCACACCCACGATGCCAAAGTCTTC
TTTGTGCACGAGTATGCCATCAGTGACAACCCTGGCTTACTTGACACCTC
CGGCAACAAACAAGAGAAGCGCAACCTGCAAAAAATTGTCAATCACGCTT
GCAAACCCAAGTACATCCAGGCATTTGTTATCGTTATCAACATGCAGTCG
CCGCGTCTCGATTACAAGCCACAAATACGGACACAGAAAGCGATAGAGGG
AATGTATGACAGCACCCAGAAAGTGAAAGAAGCTCAGAGAATGGCCGCAG
AAGAGAAGAAACTCAAGGAGGAAGCGGAACGCGCCGCAAATGAGCAAAAG
CGTCTGAAGGAAATAGCTGAACAAAAAGAAGAAGTTGGGCGACGCAAAAG
AGCTGAAGCAGAACGAGTCATAGAAGAAGGAAGACGCAGGAAGGAAGAAC
CCCAACCAGACAAAGAACACGCACAGTGCAATATGGCTGAAGCAGAGAAG
CGCCTGATTGGAGTACTTGTAGAAACTGCGCAACAGAGAAACGAAGAGAT
GAGATCGCAGATGGAGAACGCCATGAGAATGGCATGGTTGAGTCGCACGA
CTGGAGCGGGCAACGTCATGCAATACCGTACTTCGGCCGGCGACAATGAA
CCAGTGGTTGAAGAACCCGTGCAAGTGGATATAGTCGAAGAGCTCGCGGC
TGTTTCGTCTCCTGCGCCAGCGTCTCAGGCTCTCATGTCTCCTTATGTTT
TGCCTTACAGTCTCTACGTCAAAAGACGCCGTGGACTAGTTGGTGTCTTT
GGAAAAGGAGTACACAAGCTCGAGCGGGTTTTTATGGGAAATCACGGCGA
TGGAACGCCTAGAAAGCGTGGCCTGTGGGGCTCTTTTGCCGAGCTTCTGG
ATAGAACCGACTCCCGTTGCAGATTTCTTTAG
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