Ggra5418.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5418.t1
Unique NameGgra5418.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:414790..416184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T007023
PFAMsEAP30,Vps36_ESCRT-II
Max annot lvl121069|Pythiales
Evalue4.51e-36
EggNOG OGsKOG2760@1|root,KOG2760@2759|Eukaryota,1MBCU@121069|Pythiales
DescriptionVacuolar protein-sorting-associated protein. Source PGD
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5418Ggra5418Gracilaria gracilis GNS1m malegenetig00000099_pilon 414790..416184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1Ggra5418.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 414790..416184 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1.stop1Ggra5418.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 414790..414792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1.CDS1Ggra5418.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 414790..414956 -
Ggra5418.t1.CDS2Ggra5418.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 415029..416184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1.exon1Ggra5418.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 414790..414956 -
Ggra5418.t1.exon2Ggra5418.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 415029..416184 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1.intron1Ggra5418.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 414957..415028 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5418.t1.start1Ggra5418.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 416182..416184 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5418.t1 ID=Ggra5418.t1|Name=Ggra5418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MEYFSPCELTPAGTLKVVDGEFITASIDKTTIQTHDKKATSHVKGLLNVT
THRIVWTDARRTRAISANLTSLSASSPTEDKSSPLRARILLRFGRGVRIN
FESKTAARDRDRFMNAVNEACARKEWQRIAERMAKEAAEKERMGEYVPRR
AGMSGVQDRVRMQNAQRREAIHTGFSSIDQLRDQAEDLMKIAGLFRTKKD
ANGEDNELLNMMAEMGIESPVTKELTGGNVAVYREQLSRQLSQFLRVAVV
RVGGIMTLTDAYCLTMRNRASTELVSPEDFRAACGAFRRLKLGIEVRRLE
SGVLALWMDCSKDSSGAQSLLDMALKESSITALDVVRTRHIPIQRALAML
KEAEALGFLARDETTDGLRFFPNGFPMLLKNSNTGTAEGGHLRGADFLRD
LLADAEDVGRGHLLEVDASDEPGESGHDGGVAVGVMRKEG*
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spliced messenger RNA

>Ggra5418.t1 ID=Ggra5418.t1|Name=Ggra5418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000099_pilon:414790..416184- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATACTTTTCCCCATGCGAACTCACGCCGGCAGGTACATTGAAAGT
CGTGGATGGGGAATTCATAACTGCCAGTATTGACAAGACAACGATACAGA
CTCATGACAAAAAGGCCACTTCCCACGTGAAAGGTCTACTGAACGTGACA
ACGCACCGTATAGTGTGGACAGATGCGCGTCGAACGAGGGCAATTAGTGC
CAATCTAACATCTTTATCGGCTTCCTCGCCAACGGAAGACAAATCATCAC
CGCTTCGAGCAAGAATCCTCCTTCGCTTCGGGCGTGGTGTTCGGATAAAC
TTCGAATCAAAAACGGCCGCAAGGGATCGAGACCGGTTCATGAACGCTGT
GAACGAGGCGTGTGCACGGAAGGAATGGCAGCGAATTGCGGAACGAATGG
CGAAAGAAGCGGCTGAAAAGGAAAGAATGGGGGAGTATGTGCCAAGACGG
GCGGGCATGAGTGGTGTTCAAGATCGAGTACGGATGCAAAACGCTCAAAG
GCGAGAAGCAATACATACTGGGTTCTCTTCTATTGATCAGCTTCGTGATC
AGGCTGAGGACTTGATGAAGATTGCTGGGTTGTTTCGAACGAAGAAAGAT
GCAAACGGCGAGGACAATGAATTGTTGAACATGATGGCGGAGATGGGTAT
AGAATCACCCGTCACAAAAGAGTTGACCGGTGGGAATGTGGCGGTGTATA
GGGAACAGCTTTCAAGGCAGCTGTCACAGTTTCTACGAGTGGCGGTTGTT
CGAGTTGGGGGAATTATGACGTTAACAGATGCATATTGTTTAACGATGCG
CAATCGAGCAAGCACTGAGCTGGTATCGCCAGAGGATTTTCGAGCGGCGT
GCGGAGCTTTTCGAAGGCTAAAATTGGGAATCGAAGTGAGGAGATTAGAG
AGCGGAGTATTAGCACTGTGGATGGACTGCTCAAAAGATTCATCGGGGGC
ACAGAGTTTACTGGATATGGCGTTGAAAGAAAGTAGTATCACCGCATTAG
ACGTGGTTCGAACGCGACATATCCCAATTCAAAGAGCGTTAGCAATGCTC
AAAGAGGCGGAGGCGCTAGGATTTCTTGCGCGCGACGAGACAACGGACGG
ACTTCGATTCTTCCCCAACGGGTTCCCGATGCTGTTGAAGAACTCGAACA
CGGGGACGGCCGAGGGCGGCCACCTCCGGGGCGCCGATTTTCTGCGAGAC
CTGCTGGCCGACGCGGAGGATGTCGGGCGTGGTCATCTGCTGGAGGTTGA
CGCTTCGGACGAGCCTGGAGAGAGCGGACATGACGGGGGCGTGGCGGTGG
GCGTGATGAGGAAGGAAGGATAA
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protein sequence of Ggra5418.t1

>Ggra5418.t1 ID=Ggra5418.t1|Name=Ggra5418.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MEYFSPCELTPAGTLKVVDGEFITASIDKTTIQTHDKKATSHVKGLLNVT
THRIVWTDARRTRAISANLTSLSASSPTEDKSSPLRARILLRFGRGVRIN
FESKTAARDRDRFMNAVNEACARKEWQRIAERMAKEAAEKERMGEYVPRR
AGMSGVQDRVRMQNAQRREAIHTGFSSIDQLRDQAEDLMKIAGLFRTKKD
ANGEDNELLNMMAEMGIESPVTKELTGGNVAVYREQLSRQLSQFLRVAVV
RVGGIMTLTDAYCLTMRNRASTELVSPEDFRAACGAFRRLKLGIEVRRLE
SGVLALWMDCSKDSSGAQSLLDMALKESSITALDVVRTRHIPIQRALAML
KEAEALGFLARDETTDGLRFFPNGFPMLLKNSNTGTAEGGHLRGADFLRD
LLADAEDVGRGHLLEVDASDEPGESGHDGGVAVGVMRKEG*
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mRNA from alignment at tig00000099_pilon:414790..416184-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5418.t1 ID=Ggra5418.t1|Name=Ggra5418.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000099_pilon:414790..416184- (Gracilaria gracilis GNS1m male)
ATGGAATACTTTTCCCCATGCGAACTCACGCCGGCAGGTACATTGAAAGT
CGTGGATGGGGAATTCATAACTGCCAGTATTGACAAGACAACGATACAGA
CTCATGACAAAAAGGCCACTTCCCACGTGAAAGGTCTACTGAACGTGACA
ACGCACCGTATAGTGTGGACAGATGCGCGTCGAACGAGGGCAATTAGTGC
CAATCTAACATCTTTATCGGCTTCCTCGCCAACGGAAGACAAATCATCAC
CGCTTCGAGCAAGAATCCTCCTTCGCTTCGGGCGTGGTGTTCGGATAAAC
TTCGAATCAAAAACGGCCGCAAGGGATCGAGACCGGTTCATGAACGCTGT
GAACGAGGCGTGTGCACGGAAGGAATGGCAGCGAATTGCGGAACGAATGG
CGAAAGAAGCGGCTGAAAAGGAAAGAATGGGGGAGTATGTGCCAAGACGG
GCGGGCATGAGTGGTGTTCAAGATCGAGTACGGATGCAAAACGCTCAAAG
GCGAGAAGCAATACATACTGGGTTCTCTTCTATTGATCAGCTTCGTGATC
AGGCTGAGGACTTGATGAAGATTGCTGGGTTGTTTCGAACGAAGAAAGAT
GCAAACGGCGAGGACAATGAATTGTTGAACATGATGGCGGAGATGGGTAT
AGAATCACCCGTCACAAAAGAGTTGACCGGTGGGAATGTGGCGGTGTATA
GGGAACAGCTTTCAAGGCAGCTGTCACAGTTTCTACGAGTGGCGGTTGTT
CGAGTTGGGGGAATTATGACGTTAACAGATGCATATTGTTTAACGATGCG
CAATCGAGCAAGCACTGAGCTGGTATCGCCAGAGGATTTTCGAGCGGCGT
GCGGAGCTTTTCGAAGGCTAAAATTGGGAATCGAAGTGAGGAGATTAGAG
AGCGGAGTATTAGCACTGTGGATGGACTGCTCAAAAGATTCATCGGGGGC
ACAGAGTTTACTGGATATGGCGTTGAAAGAAAGTAGTATCACCGCATTAG
ACGTGGTTCGAACGCGACATATCCCAATTCAAAGAGCGTTAGCAATGCTC
AAAGAGGCGGAGGCGCTAGGATTTCTTGCGCGCGACGAGACAACGGACGG
ACTTCGATTCTTCCCCAACGGGTTCCCGATGCTGTTGAAGAACTCGAACA
CGGGGAGTAAATCATGAGGATTGTTCAAAGTTAGGTTCTACCATCCAGTA
AACGACGAGACCGAGGGCGACTGACCAGCGGCCGAGGGCGGCCACCTCCG
GGGCGCCGATTTTCTGCGAGACCTGCTGGCCGACGCGGAGGATGTCGGGC
GTGGTCATCTGCTGGAGGTTGACGCTTCGGACGAGCCTGGAGAGAGCGGA
CATGACGGGGGCGTGGCGGTGGGCGTGATGAGGAAGGAAGGATAA
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Coding sequence (CDS) from alignment at tig00000099_pilon:414790..416184-

>Ggra5418.t1 ID=Ggra5418.t1|Name=Ggra5418.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000099_pilon:414790..416184- (Gracilaria gracilis GNS1m male)
ATGGAATACTTTTCCCCATGCGAACTCACGCCGGCAGGTACATTGAAAGT
CGTGGATGGGGAATTCATAACTGCCAGTATTGACAAGACAACGATACAGA
CTCATGACAAAAAGGCCACTTCCCACGTGAAAGGTCTACTGAACGTGACA
ACGCACCGTATAGTGTGGACAGATGCGCGTCGAACGAGGGCAATTAGTGC
CAATCTAACATCTTTATCGGCTTCCTCGCCAACGGAAGACAAATCATCAC
CGCTTCGAGCAAGAATCCTCCTTCGCTTCGGGCGTGGTGTTCGGATAAAC
TTCGAATCAAAAACGGCCGCAAGGGATCGAGACCGGTTCATGAACGCTGT
GAACGAGGCGTGTGCACGGAAGGAATGGCAGCGAATTGCGGAACGAATGG
CGAAAGAAGCGGCTGAAAAGGAAAGAATGGGGGAGTATGTGCCAAGACGG
GCGGGCATGAGTGGTGTTCAAGATCGAGTACGGATGCAAAACGCTCAAAG
GCGAGAAGCAATACATACTGGGTTCTCTTCTATTGATCAGCTTCGTGATC
AGGCTGAGGACTTGATGAAGATTGCTGGGTTGTTTCGAACGAAGAAAGAT
GCAAACGGCGAGGACAATGAATTGTTGAACATGATGGCGGAGATGGGTAT
AGAATCACCCGTCACAAAAGAGTTGACCGGTGGGAATGTGGCGGTGTATA
GGGAACAGCTTTCAAGGCAGCTGTCACAGTTTCTACGAGTGGCGGTTGTT
CGAGTTGGGGGAATTATGACGTTAACAGATGCATATTGTTTAACGATGCG
CAATCGAGCAAGCACTGAGCTGGTATCGCCAGAGGATTTTCGAGCGGCGT
GCGGAGCTTTTCGAAGGCTAAAATTGGGAATCGAAGTGAGGAGATTAGAG
AGCGGAGTATTAGCACTGTGGATGGACTGCTCAAAAGATTCATCGGGGGC
ACAGAGTTTACTGGATATGGCGTTGAAAGAAAGTAGTATCACCGCATTAG
ACGTGGTTCGAACGCGACATATCCCAATTCAAAGAGCGTTAGCAATGCTC
AAAGAGGCGGAGGCGCTAGGATTTCTTGCGCGCGACGAGACAACGGACGG
ACTTCGATTCTTCCCCAACGGGTTCCCGATGCTGTTGAAGAACTCGAACA
CGGGGACGGCCGAGGGCGGCCACCTCCGGGGCGCCGATTTTCTGCGAGAC
CTGCTGGCCGACGCGGAGGATGTCGGGCGTGGTCATCTGCTGGAGGTTGA
CGCTTCGGACGAGCCTGGAGAGAGCGGACATGACGGGGGCGTGGCGGTGG
GCGTGATGAGGAAGGAAGGATAA
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