Ggra5416.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5416.t1
Unique NameGgra5416.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:403136..404704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9371.XP_004704506.1
Preferred nameCNOT11
PFAMsDUF2363
Max annot lvl33208|Metazoa
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0022402,GO:0023052,GO:0030014,GO:0030330,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0032268,GO:0032269,GO:0032991,GO:0033554,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0035556,GO:0042770,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:2000045,GO:2000112,GO:2000113,GO:2000134
Evalue5.61e-33
EggNOG OGsCOG3823@1|root,KOG4508@2759|Eukaryota,38HRB@33154|Opisthokonta,3BF07@33208|Metazoa,3D1AV@33213|Bilateria,485IX@7711|Chordata,48Y62@7742|Vertebrata,3JERB@40674|Mammalia,3508Y@311790|Afrotheria
DescriptionCCR4-NOT transcription complex, subunit 11
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5416Ggra5416Gracilaria gracilis GNS1m malegenetig00000099_pilon 403136..404704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1Ggra5416.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 403136..404704 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1.start1Ggra5416.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 403136..403138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1.CDS1Ggra5416.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 403136..403814 +
Ggra5416.t1.CDS2Ggra5416.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 403983..404329 +
Ggra5416.t1.CDS3Ggra5416.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000099_pilon 404471..404547 +
Ggra5416.t1.CDS4Ggra5416.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000099_pilon 404659..404704 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1.exon1Ggra5416.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 403136..403814 +
Ggra5416.t1.exon2Ggra5416.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 403983..404329 +
Ggra5416.t1.exon3Ggra5416.t1.exon3Gracilaria gracilis GNS1m maleexontig00000099_pilon 404471..404547 +
Ggra5416.t1.exon4Ggra5416.t1.exon4Gracilaria gracilis GNS1m maleexontig00000099_pilon 404659..404704 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1.intron1Ggra5416.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 403815..403982 +
Ggra5416.t1.intron2Ggra5416.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000099_pilon 404330..404470 +
Ggra5416.t1.intron3Ggra5416.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000099_pilon 404548..404658 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5416.t1.stop1Ggra5416.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 404702..404704 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5416.t1 ID=Ggra5416.t1|Name=Ggra5416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MSVRFQPPTPQMNRAHPLSLPSVFFPAAPPPRRYTAPPPRRPTATPPGCP
AAPTFPATQSSRRLQHSHSSPLPASAQYANSSTTVIDASISALLQDDLLP
NPEQRLIAIFVMYDMIAARYASPSPSTSVLERLIASPLSIILFELMSETN
PYSSKQLFLSHLLRLSEDHRFQSSNGELPTDGEIAKTAAMALYVALEDAI
RSGESVAAPNISTLRHMWAARHPETSESKELRWIDPEPLHEIIWDPEMGM
KGERGAELREIISKAIKSLIPEAQRMKVRQMLNDDPKLVHLCGITPQKLP
DLVNNNAPLATDILLKLMSSTQMPKYLDALVNMDMNLQSMDIRLIKNKNI
DLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
back to top

spliced messenger RNA

>Ggra5416.t1 ID=Ggra5416.t1|Name=Ggra5416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000099_pilon:403136..404704+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGTCCGCTTTCAGCCACCGACGCCCCAGATGAATCGCGCCCACCC
GTTGTCCCTGCCATCTGTTTTCTTTCCCGCCGCCCCACCGCCCCGCCGTT
ACACTGCCCCACCGCCCCGCCGCCCCACCGCCACACCCCCCGGGTGCCCC
GCCGCCCCGACGTTCCCGGCAACGCAGTCCTCGCGCCGCCTGCAGCATTC
TCATTCTTCCCCACTGCCAGCCTCCGCTCAGTACGCCAACTCTTCGACTA
CTGTTATTGACGCTTCAATTTCTGCTCTCCTTCAAGATGACTTGCTTCCA
AATCCTGAACAACGACTAATCGCTATTTTTGTGATGTACGATATGATTGC
CGCCCGTTATGCCTCCCCATCACCATCTACTTCTGTTCTCGAACGCTTAA
TCGCAAGCCCGCTATCTATAATACTCTTTGAACTCATGAGCGAAACTAAT
CCTTATTCCTCAAAACAGCTTTTTCTGAGCCACTTACTTCGTTTGTCGGA
AGATCACCGTTTTCAATCGAGTAACGGTGAACTTCCAACAGACGGTGAGA
TAGCGAAAACAGCCGCCATGGCCCTGTACGTTGCGCTAGAAGACGCCATT
CGCAGTGGTGAATCGGTCGCCGCCCCAAACATTTCTACTTTGCGTCATAT
GTGGGCTGCAAGGCACCCTGAAACCTCAGagagtaAGGAGTTGCGTTGGA
TTGATCCTGAGCCACTGCATGAGATTATCTGGGATCCGGAAATGGGAATG
AAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAAGGCTATTAA
AAGCCTAATACCAGAAGCGCAGCGAATGAAAGTGCGTCAAATGCTGAATG
ATGATCCCAAGCTCGTTCATCTCTGTGGAATTACCCCACAGAAACTACCA
GACCTGGTCAATAACAACGCACCACTCGCTACGGACATCTTACTGAAGTT
GATGTCCTCGACGCAGATGCCAAAGTACTTAGATGCACTCGTAAACATGG
ATATGAATCTGCAATCGATGGATATTCGTCTCATCAAGAACAAAAACATA
GACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTATGGGTTACTG
CAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCAAGCTCTGTGA
back to top

protein sequence of Ggra5416.t1

>Ggra5416.t1 ID=Ggra5416.t1|Name=Ggra5416.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MSVRFQPPTPQMNRAHPLSLPSVFFPAAPPPRRYTAPPPRRPTATPPGCP
AAPTFPATQSSRRLQHSHSSPLPASAQYANSSTTVIDASISALLQDDLLP
NPEQRLIAIFVMYDMIAARYASPSPSTSVLERLIASPLSIILFELMSETN
PYSSKQLFLSHLLRLSEDHRFQSSNGELPTDGEIAKTAAMALYVALEDAI
RSGESVAAPNISTLRHMWAARHPETSESKELRWIDPEPLHEIIWDPEMGM
KGERGAELREIISKAIKSLIPEAQRMKVRQMLNDDPKLVHLCGITPQKLP
DLVNNNAPLATDILLKLMSSTQMPKYLDALVNMDMNLQSMDIRLIKNKNI
DLQDLLVEVQGFCMGYCRIREVADLYRSLQAL*
back to top

mRNA from alignment at tig00000099_pilon:403136..404704+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5416.t1 ID=Ggra5416.t1|Name=Ggra5416.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1569bp|location=Sequence derived from alignment at tig00000099_pilon:403136..404704+ (Gracilaria gracilis GNS1m male)
ATGTCAGTCCGCTTTCAGCCACCGACGCCCCAGATGAATCGCGCCCACCC
GTTGTCCCTGCCATCTGTTTTCTTTCCCGCCGCCCCACCGCCCCGCCGTT
ACACTGCCCCACCGCCCCGCCGCCCCACCGCCACACCCCCCGGGTGCCCC
GCCGCCCCGACGTTCCCGGCAACGCAGTCCTCGCGCCGCCTGCAGCATTC
TCATTCTTCCCCACTGCCAGCCTCCGCTCAGTACGCCAACTCTTCGACTA
CTGTTATTGACGCTTCAATTTCTGCTCTCCTTCAAGATGACTTGCTTCCA
AATCCTGAACAACGACTAATCGCTATTTTTGTGATGTACGATATGATTGC
CGCCCGTTATGCCTCCCCATCACCATCTACTTCTGTTCTCGAACGCTTAA
TCGCAAGCCCGCTATCTATAATACTCTTTGAACTCATGAGCGAAACTAAT
CCTTATTCCTCAAAACAGCTTTTTCTGAGCCACTTACTTCGTTTGTCGGA
AGATCACCGTTTTCAATCGAGTAACGGTGAACTTCCAACAGACGGTGAGA
TAGCGAAAACAGCCGCCATGGCCCTGTACGTTGCGCTAGAAGACGCCATT
CGCAGTGGTGAATCGGTCGCCGCCCCAAACATTTCTACTTTGCGTCATAT
GTGGGCTGCAAGGCACCCTGAAACCTCAGGTAACTCTTGTGGTTTAAAAT
ccattagcgctgttgtaccggatcctgatcggtttgcaattctagattct
gggcgacTTGTCAAAGAACTTGGCTCAGTGGTTGcactggaagattttac
accaacttttgttagaatacctcctccattccttcccattgagctagaga
gtaAGGAGTTGCGTTGGATTGATCCTGAGCCACTGCATGAGATTATCTGG
GATCCGGAAATGGGAATGAAAGGCGAACGTGGGGCAGAGCTGCGCGAAAT
CATCTCAAAGGCTATTAAAAGCCTAATACCAGAAGCGCAGCGAATGAAAG
TGCGTCAAATGCTGAATGATGATCCCAAGCTCGTTCATCTCTGTGGAATT
ACCCCACAGAAACTACCAGACCTGGTCAATAACAACGCACCACTCGCTAC
GGACATCTTACTGAAGTTGATGTCCTCGACGCAGATGCCAAAGTACTTAG
ATGCACTCGTAAACATGGATATGAATCTGCAATCGATGGATATTGTGAGC
CGTCTTTCAAACACTGTGCAGTTGCCAAGGGAATTCATGCATGCCTATat
aagcaattgtatgcgctcttgtgatgatataccggacaagcctacacaag
agcgaAGCGTTCGTTATTTCTGTGTGTTCCTGAAGCGTCTCATCAAGAAC
AAAAACATAGACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTAT
GGGTTACTGCAGGTAAGTACTGGTTTTCAATGTTCAAGATGATACAAACG
TTTTTTTGACATTGGACTGACACTCTTGTTCATCAAATGCTGATATGCGA
TTCAATGCCCTTGTGTGACACAGAATTCGTGAGGTTGCCGACCTATACAG
ATCTCTGCAAGCTCTGTGA
back to top

Coding sequence (CDS) from alignment at tig00000099_pilon:403136..404704+

>Ggra5416.t1 ID=Ggra5416.t1|Name=Ggra5416.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000099_pilon:403136..404704+ (Gracilaria gracilis GNS1m male)
ATGTCAGTCCGCTTTCAGCCACCGACGCCCCAGATGAATCGCGCCCACCC
GTTGTCCCTGCCATCTGTTTTCTTTCCCGCCGCCCCACCGCCCCGCCGTT
ACACTGCCCCACCGCCCCGCCGCCCCACCGCCACACCCCCCGGGTGCCCC
GCCGCCCCGACGTTCCCGGCAACGCAGTCCTCGCGCCGCCTGCAGCATTC
TCATTCTTCCCCACTGCCAGCCTCCGCTCAGTACGCCAACTCTTCGACTA
CTGTTATTGACGCTTCAATTTCTGCTCTCCTTCAAGATGACTTGCTTCCA
AATCCTGAACAACGACTAATCGCTATTTTTGTGATGTACGATATGATTGC
CGCCCGTTATGCCTCCCCATCACCATCTACTTCTGTTCTCGAACGCTTAA
TCGCAAGCCCGCTATCTATAATACTCTTTGAACTCATGAGCGAAACTAAT
CCTTATTCCTCAAAACAGCTTTTTCTGAGCCACTTACTTCGTTTGTCGGA
AGATCACCGTTTTCAATCGAGTAACGGTGAACTTCCAACAGACGGTGAGA
TAGCGAAAACAGCCGCCATGGCCCTGTACGTTGCGCTAGAAGACGCCATT
CGCAGTGGTGAATCGGTCGCCGCCCCAAACATTTCTACTTTGCGTCATAT
GTGGGCTGCAAGGCACCCTGAAACCTCAGagagtaAGGAGTTGCGTTGGA
TTGATCCTGAGCCACTGCATGAGATTATCTGGGATCCGGAAATGGGAATG
AAAGGCGAACGTGGGGCAGAGCTGCGCGAAATCATCTCAAAGGCTATTAA
AAGCCTAATACCAGAAGCGCAGCGAATGAAAGTGCGTCAAATGCTGAATG
ATGATCCCAAGCTCGTTCATCTCTGTGGAATTACCCCACAGAAACTACCA
GACCTGGTCAATAACAACGCACCACTCGCTACGGACATCTTACTGAAGTT
GATGTCCTCGACGCAGATGCCAAAGTACTTAGATGCACTCGTAAACATGG
ATATGAATCTGCAATCGATGGATATTCGTCTCATCAAGAACAAAAACATA
GACTTGCAAGACTTATTGGTGGAGGTCCAAGGGTTTTGTATGGGTTACTG
CAGAATTCGTGAGGTTGCCGACCTATACAGATCTCTGCAAGCTCTGTGA
back to top