Ggra5415.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5415.t1
Unique Name	Ggra5415.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000099_pilon	contig	tig00000099_pilon:376471..377397 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	102107.XP_008230611.1
PFAMs	ADH_N,ADH_zinc_N,ADH_zinc_N_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K18980
Evalue	2.65e-58
EggNOG OGs	COG0604@1\|root,KOG1198@2759\|Eukaryota,37YZD@33090\|Viridiplantae,3GEJQ@35493\|Streptophyta,4JTFK@91835\|fabids
EC	1.3.1.105
Description	2-methylene-furan-3-one reductase-like
COG category	C
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5415	Ggra5415	Gracilaria gracilis GNS1m male	gene	tig00000099_pilon 376471..377397 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5415.t1.start1	Ggra5415.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000099_pilon 376471..376473 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5415.t1.CDS1	Ggra5415.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000099_pilon 376471..377397 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5415.t1.exon1	Ggra5415.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000099_pilon 376471..377397 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5415.t1.stop1	Ggra5415.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000099_pilon 377395..377397 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5415.t1	Ggra5415.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000099_pilon 376471..377397 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000099_pilon:376471..377397+
coding sequence from alignment at tig00000099_pilon:376471..377397+

mRNA sequence

>Ggra5415.t1 ID=Ggra5415.t1|Name=Ggra5415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MAAAQLPKTMKALLQYDKDGEDSFRIADAPTPKPEPDQVLLRVHAASLNP
MDIKRGFLVEDSYPITVGYDVAGVVAALGESVTNFSVGDRVFGDIMRESA
GEKFSGTLAEYCVCPAHILAVIPENITFVQAAATPVVALTAIQAMETMEV
KAGDKVFISGGAGGVGVHAMQIAKNAFGAGHVATTASAAKFDFVKKHGAD
VIVNYREEDVGEKLKGWADIVLDCVGDVETGEKVMKEDGKILTIATAGPR
FMMLSPTTALITSLAKMLEEGKLSVVLDSVHSFSKVKDALAKLSSGRAKG
KIVVKVVE*

spliced messenger RNA

>Ggra5415.t1 ID=Ggra5415.t1|Name=Ggra5415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:376471..377397+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCGCACAACTCCCCAAAACGATGAAAGCGCTGCTCCAATATGA
CAAAGACGGAGAAGATAGCTTTCGTATCGCCGATGCTCCCACCCCGAAAC
CCGAGCCGGACCAGGTACTCCTCCGCGTGCATGCGGCCTCTCTCAACCCC
ATGGACATCAAACGGGGCTTCCTCGTCGAGGATTCCTATCCAATCACTGT
CGGCTATGACGTGGCGGGCGTCGTCGCAGCCCTCGGCGAGTCTGTCACCA
ACTTTTCTGTTGGCGACCGTGTGTTTGGTGACATCATGAGAGAAAGTGCT
GGCGAGAAATTCTCCGGCACTTTGGCTGAGTACTGTGTGTGTCCCGCACA
CATTCTGGCAGTCATTCCCGAGAACATCACGTTCGTACAGGCCGCTGCCA
CGCCGGTGGTCGCGCTCACAGCCATCCAGGCCATGGAAACCATGGAGGTC
AAAGCTGGAGATAAGGTCTTCATCAGCGGCGGTGCCGGGGGGGTTGGTGT
TCACGCCATGCAGATTGCGAAGAACGCATTTGGAGCTGGTCATGTTGCCA
CCACCGCGTCCGCTGCAAAATTCGATTTCGTTAAAAAGCACGGTGCTGAT
GTCATTGTAAACTACAGGGAAGAAGATGTGGGGGAAAAACTTAAGGGATG
GGCTGATATTGTTCTGGACTGTGTTGGTGACGTGGAAACCGGCGAAAAGG
TCATGAAGGAAGACGGTAAAATTCTCACCATTGCGACCGCGGGACCACGA
TTCATGATGCTGTCACCAACCACAGCGCTCATTACAAGCCTCGCTAAGAT
GTTGGAAGAGGGCAAGCTCAGTGTGGTACTTGATTCTGTTCATTCGTTTT
CGAAAGTGAAAGACGCATTGGCGAAGCTTTCAAGTGGAAGGGCGAAGGGC
AAGATCGTGGTCAAGGTTGTGGAATGA

protein sequence of Ggra5415.t1

>Ggra5415.t1 ID=Ggra5415.t1|Name=Ggra5415.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MAAAQLPKTMKALLQYDKDGEDSFRIADAPTPKPEPDQVLLRVHAASLNP
MDIKRGFLVEDSYPITVGYDVAGVVAALGESVTNFSVGDRVFGDIMRESA
GEKFSGTLAEYCVCPAHILAVIPENITFVQAAATPVVALTAIQAMETMEV
KAGDKVFISGGAGGVGVHAMQIAKNAFGAGHVATTASAAKFDFVKKHGAD
VIVNYREEDVGEKLKGWADIVLDCVGDVETGEKVMKEDGKILTIATAGPR
FMMLSPTTALITSLAKMLEEGKLSVVLDSVHSFSKVKDALAKLSSGRAKG
KIVVKVVE*

mRNA from alignment at tig00000099_pilon:376471..377397+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5415.t1 ID=Ggra5415.t1|Name=Ggra5415.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:376471..377397+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGCACAACTCCCCAAAACGATGAAAGCGCTGCTCCAATATGA
CAAAGACGGAGAAGATAGCTTTCGTATCGCCGATGCTCCCACCCCGAAAC
CCGAGCCGGACCAGGTACTCCTCCGCGTGCATGCGGCCTCTCTCAACCCC
ATGGACATCAAACGGGGCTTCCTCGTCGAGGATTCCTATCCAATCACTGT
CGGCTATGACGTGGCGGGCGTCGTCGCAGCCCTCGGCGAGTCTGTCACCA
ACTTTTCTGTTGGCGACCGTGTGTTTGGTGACATCATGAGAGAAAGTGCT
GGCGAGAAATTCTCCGGCACTTTGGCTGAGTACTGTGTGTGTCCCGCACA
CATTCTGGCAGTCATTCCCGAGAACATCACGTTCGTACAGGCCGCTGCCA
CGCCGGTGGTCGCGCTCACAGCCATCCAGGCCATGGAAACCATGGAGGTC
AAAGCTGGAGATAAGGTCTTCATCAGCGGCGGTGCCGGGGGGGTTGGTGT
TCACGCCATGCAGATTGCGAAGAACGCATTTGGAGCTGGTCATGTTGCCA
CCACCGCGTCCGCTGCAAAATTCGATTTCGTTAAAAAGCACGGTGCTGAT
GTCATTGTAAACTACAGGGAAGAAGATGTGGGGGAAAAACTTAAGGGATG
GGCTGATATTGTTCTGGACTGTGTTGGTGACGTGGAAACCGGCGAAAAGG
TCATGAAGGAAGACGGTAAAATTCTCACCATTGCGACCGCGGGACCACGA
TTCATGATGCTGTCACCAACCACAGCGCTCATTACAAGCCTCGCTAAGAT
GTTGGAAGAGGGCAAGCTCAGTGTGGTACTTGATTCTGTTCATTCGTTTT
CGAAAGTGAAAGACGCATTGGCGAAGCTTTCAAGTGGAAGGGCGAAGGGC
AAGATCGTGGTCAAGGTTGTGGAATGA

Coding sequence (CDS) from alignment at tig00000099_pilon:376471..377397+

>Ggra5415.t1 ID=Ggra5415.t1|Name=Ggra5415.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:376471..377397+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCGCACAACTCCCCAAAACGATGAAAGCGCTGCTCCAATATGA
CAAAGACGGAGAAGATAGCTTTCGTATCGCCGATGCTCCCACCCCGAAAC
CCGAGCCGGACCAGGTACTCCTCCGCGTGCATGCGGCCTCTCTCAACCCC
ATGGACATCAAACGGGGCTTCCTCGTCGAGGATTCCTATCCAATCACTGT
CGGCTATGACGTGGCGGGCGTCGTCGCAGCCCTCGGCGAGTCTGTCACCA
ACTTTTCTGTTGGCGACCGTGTGTTTGGTGACATCATGAGAGAAAGTGCT
GGCGAGAAATTCTCCGGCACTTTGGCTGAGTACTGTGTGTGTCCCGCACA
CATTCTGGCAGTCATTCCCGAGAACATCACGTTCGTACAGGCCGCTGCCA
CGCCGGTGGTCGCGCTCACAGCCATCCAGGCCATGGAAACCATGGAGGTC
AAAGCTGGAGATAAGGTCTTCATCAGCGGCGGTGCCGGGGGGGTTGGTGT
TCACGCCATGCAGATTGCGAAGAACGCATTTGGAGCTGGTCATGTTGCCA
CCACCGCGTCCGCTGCAAAATTCGATTTCGTTAAAAAGCACGGTGCTGAT
GTCATTGTAAACTACAGGGAAGAAGATGTGGGGGAAAAACTTAAGGGATG
GGCTGATATTGTTCTGGACTGTGTTGGTGACGTGGAAACCGGCGAAAAGG
TCATGAAGGAAGACGGTAAAATTCTCACCATTGCGACCGCGGGACCACGA
TTCATGATGCTGTCACCAACCACAGCGCTCATTACAAGCCTCGCTAAGAT
GTTGGAAGAGGGCAAGCTCAGTGTGGTACTTGATTCTGTTCATTCGTTTT
CGAAAGTGAAAGACGCATTGGCGAAGCTTTCAAGTGGAAGGGCGAAGGGC
AAGATCGTGGTCAAGGTTGTGGAATGA