Ggra5410.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5410.t1
Unique NameGgra5410.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:301826..302671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_5989
Preferred nameamgP
PFAMsAPH
Max annot lvl2|Bacteria
Evalue2.16e-14
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria
Descriptionvery-long-chain-acyl-CoA dehydrogenase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5410Ggra5410Gracilaria gracilis GNS1m malegenetig00000099_pilon 301826..302671 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5410.t1.stop1Ggra5410.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 301826..301828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5410.t1.CDS1Ggra5410.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 301826..302671 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5410.t1.exon1Ggra5410.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 301826..302671 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5410.t1.start1Ggra5410.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 302669..302671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5410.t1Ggra5410.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 301826..302671 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5410.t1 ID=Ggra5410.t1|Name=Ggra5410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MRKVRCIESDRKQLFFVKTCSPSSNEALITAELAAFAREFVPEVIAVHRK
RNSFIQCDAGYLDFPIEIATLFEELAELHIASIPLLPNLTNLGIHVYDGS
WFANNVHVILNNPVIYEYGEKADVQLLLQRSTYIKEIYRELDAAGIPDTL
VHGDLHIGNLSCQPVLRSRYKYLFFDWGSAYVGNPLEDIAVLLHSLGAEE
IQLDRTSVLTIYMRRWGWTMTQCELERLVSIAGLRYWMLHLHLITKSCES
TSRTGSKQALFAEVNDIAAQLASIVRHVTRM*
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spliced messenger RNA

>Ggra5410.t1 ID=Ggra5410.t1|Name=Ggra5410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000099_pilon:301826..302671- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAAAGGTCAGATGCATCGAGAGTGACAGGAAGCAACTTTTCTTCGT
AAAGACCTGTTCGCCATCATCTAACGAGGCACTCATTACGGCGGAGTTAG
CAGCCTTTGCAAGAGAATTTGTCCCAGAAGTGATTGCAGTCCATCGGAAG
CGGAACTCGTTCATTCAGTGTGACGCAGGATATTTAGATTTTCCTATTGA
AATTGCCACTCTCTTTGAAGAACTAGCTGAGCTGCACATCGCGTCTATAC
CACTCCTGCCCAACCTGACGAACCTGGGAATTCATGTATACGATGGTTCC
TGGTTTGCGAACAATGTGCATGTCATTTTGAATAACCCGGTTATCTATGA
GTATGGAGAAAAGGCTGACGTGCAGCTTCTTTTGCAAAGATCTACATATA
TCAAGGAAATTTATCGGGAGCTTGATGCAGCAGGTATACCTGACACGCTT
GTTCACGGTGATCTACATATTGGAAACTTGTCATGTCAACCTGTATTGCG
GTCAAGATACAAGTACCTTTTTTTTGACTGGGGTTCGGCATACGTAGGAA
ATCCATTGGAAGACATAGCAGTGCTTCTTCACAGTCTTGGAGCAGAAGAG
ATCCAGCTGGACAGAACTTCTGTGCTGACCATCTATATGCGTCGCTGGGG
CTGGACTATGACGCAATGTGAACTAGAACGCCTCGTGAGCATTGCTGGTC
TCCGTTACTGGATGCTTCACCTACATCTTATAACCAAGTCTTGTGAATCG
ACTTCACGTACAGGCTCAAAACAGGCCTTGTTTGCCGAAGTGAATGATAT
CGCTGCACAACTGGCGAGCATTGTGAGGCACGTTACAAGAATGTAG
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protein sequence of Ggra5410.t1

>Ggra5410.t1 ID=Ggra5410.t1|Name=Ggra5410.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MRKVRCIESDRKQLFFVKTCSPSSNEALITAELAAFAREFVPEVIAVHRK
RNSFIQCDAGYLDFPIEIATLFEELAELHIASIPLLPNLTNLGIHVYDGS
WFANNVHVILNNPVIYEYGEKADVQLLLQRSTYIKEIYRELDAAGIPDTL
VHGDLHIGNLSCQPVLRSRYKYLFFDWGSAYVGNPLEDIAVLLHSLGAEE
IQLDRTSVLTIYMRRWGWTMTQCELERLVSIAGLRYWMLHLHLITKSCES
TSRTGSKQALFAEVNDIAAQLASIVRHVTRM*
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mRNA from alignment at tig00000099_pilon:301826..302671-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5410.t1 ID=Ggra5410.t1|Name=Ggra5410.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000099_pilon:301826..302671- (Gracilaria gracilis GNS1m male)
ATGCGAAAGGTCAGATGCATCGAGAGTGACAGGAAGCAACTTTTCTTCGT
AAAGACCTGTTCGCCATCATCTAACGAGGCACTCATTACGGCGGAGTTAG
CAGCCTTTGCAAGAGAATTTGTCCCAGAAGTGATTGCAGTCCATCGGAAG
CGGAACTCGTTCATTCAGTGTGACGCAGGATATTTAGATTTTCCTATTGA
AATTGCCACTCTCTTTGAAGAACTAGCTGAGCTGCACATCGCGTCTATAC
CACTCCTGCCCAACCTGACGAACCTGGGAATTCATGTATACGATGGTTCC
TGGTTTGCGAACAATGTGCATGTCATTTTGAATAACCCGGTTATCTATGA
GTATGGAGAAAAGGCTGACGTGCAGCTTCTTTTGCAAAGATCTACATATA
TCAAGGAAATTTATCGGGAGCTTGATGCAGCAGGTATACCTGACACGCTT
GTTCACGGTGATCTACATATTGGAAACTTGTCATGTCAACCTGTATTGCG
GTCAAGATACAAGTACCTTTTTTTTGACTGGGGTTCGGCATACGTAGGAA
ATCCATTGGAAGACATAGCAGTGCTTCTTCACAGTCTTGGAGCAGAAGAG
ATCCAGCTGGACAGAACTTCTGTGCTGACCATCTATATGCGTCGCTGGGG
CTGGACTATGACGCAATGTGAACTAGAACGCCTCGTGAGCATTGCTGGTC
TCCGTTACTGGATGCTTCACCTACATCTTATAACCAAGTCTTGTGAATCG
ACTTCACGTACAGGCTCAAAACAGGCCTTGTTTGCCGAAGTGAATGATAT
CGCTGCACAACTGGCGAGCATTGTGAGGCACGTTACAAGAATGTAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:301826..302671-

>Ggra5410.t1 ID=Ggra5410.t1|Name=Ggra5410.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000099_pilon:301826..302671- (Gracilaria gracilis GNS1m male)
ATGCGAAAGGTCAGATGCATCGAGAGTGACAGGAAGCAACTTTTCTTCGT
AAAGACCTGTTCGCCATCATCTAACGAGGCACTCATTACGGCGGAGTTAG
CAGCCTTTGCAAGAGAATTTGTCCCAGAAGTGATTGCAGTCCATCGGAAG
CGGAACTCGTTCATTCAGTGTGACGCAGGATATTTAGATTTTCCTATTGA
AATTGCCACTCTCTTTGAAGAACTAGCTGAGCTGCACATCGCGTCTATAC
CACTCCTGCCCAACCTGACGAACCTGGGAATTCATGTATACGATGGTTCC
TGGTTTGCGAACAATGTGCATGTCATTTTGAATAACCCGGTTATCTATGA
GTATGGAGAAAAGGCTGACGTGCAGCTTCTTTTGCAAAGATCTACATATA
TCAAGGAAATTTATCGGGAGCTTGATGCAGCAGGTATACCTGACACGCTT
GTTCACGGTGATCTACATATTGGAAACTTGTCATGTCAACCTGTATTGCG
GTCAAGATACAAGTACCTTTTTTTTGACTGGGGTTCGGCATACGTAGGAA
ATCCATTGGAAGACATAGCAGTGCTTCTTCACAGTCTTGGAGCAGAAGAG
ATCCAGCTGGACAGAACTTCTGTGCTGACCATCTATATGCGTCGCTGGGG
CTGGACTATGACGCAATGTGAACTAGAACGCCTCGTGAGCATTGCTGGTC
TCCGTTACTGGATGCTTCACCTACATCTTATAACCAAGTCTTGTGAATCG
ACTTCACGTACAGGCTCAAAACAGGCCTTGTTTGCCGAAGTGAATGATAT
CGCTGCACAACTGGCGAGCATTGTGAGGCACGTTACAAGAATGTAG
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