Ggra5409.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5409.t1
Unique NameGgra5409.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length393
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:300227..301495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5409Ggra5409Gracilaria gracilis GNS1m malegenetig00000099_pilon 300227..301495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1Ggra5409.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 300227..301495 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1.start1Ggra5409.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 300227..300229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1.CDS1Ggra5409.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 300227..300820 +
Ggra5409.t1.CDS2Ggra5409.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 300911..301495 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1.exon1Ggra5409.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 300227..300820 +
Ggra5409.t1.exon2Ggra5409.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 300911..301495 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1.intron1Ggra5409.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 300821..300910 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5409.t1.stop1Ggra5409.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 301493..301495 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5409.t1 ID=Ggra5409.t1|Name=Ggra5409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp
MSLHVNHIIEFAYEQAITAVVPRSLRRILEDFFVLEERYNVRGIEVLAEM
SASLRDAEDGQDLRRQRSENFIRANKQSAVNMHVCGLVLKMDAKTVSTLR
EVMDAGATSLATIGSAISLLQKFVSPISLIHPAFCTYPTITIGLFFCRAL
HVCLACPDPDIDDEHFMYGDTSTIFLKAVDRLKIRASRLGVQWQWDSMNT
WDEEIGDYGLEIPGEDYAAVYEDFRKTPWVAASKRLISRSEWSLGMRDLA
RSFYVSQRFLANVRDGSDQDEVDEFIAYRDEDSGELVRCTDLQSALCNFY
RMLLPFVQQKAQRVRESMGDALIATDYDEILVNETAELMCAIVLAGAIVT
DEGKVFKDLHVSFWTSRGINARASAPFVSSCEKCRELFLSEN*
back to top

spliced messenger RNA

>Ggra5409.t1 ID=Ggra5409.t1|Name=Ggra5409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00000099_pilon:300227..301495+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTCCATGTTAATCACATCATCGAATTCGCATACGAACAAGCGAT
CACTGCCGTTGTACCCCGCAGTTTGAGAAGAATTCTAGAGGACTTTTTTG
TTCTTGAGGAACGGTATAACGTTCGCGGAATCGAGGTATTAGCGGAAATG
TCTGCATCGCTCAGGGATGCAGAAGACGGGCAGGACCTTCGAAGACAAAG
GTCGGAGAACTTTATCCGCGCCAACAAGCAGAGCGCAGTGAATATGCACG
TTTGTGGTCTCGTGCTGAAGATGGATGCGAAGACGGTTAGCACTTTGCGA
GAAGTCATGGACGCCGGAGCCACTTCTCTTGCGACCATAGGCTCGGCGAT
ATCACTGTTGCAGAAGTTTGTTTCGCCGATCTCGCTAATTCATCCGGCGT
TCTGCACATATCCAACAATAACGATTGGACTCTTCTTCTGCCGAGCACTC
CATGTCTGTCTGGCGTGCCCCGATCCTGATATTGATGACGAGCATTTCAT
GTACGGCGACACTTCAACTATCTTCCTCAAAGCAGTGGATCGACTTAAAA
TTCGAGCTTCTCGTCTCGGTGTACAATGGCAGTGGGATTCTATGAACACT
TGGGACGAGGAGATTGGGGACTATGGCCTCGAGATCCCCGGCGAAGATTA
TGCAGCAGTATACGAGGATTTTCGAAAAACTCCGTGGGTGGCTGCCTCGA
AGAGGCTCATCTCTCGTTCGGAATGGTCCTTGGGGATGCGGGATCTTGCT
CGCTCATTCTACGTTTCCCAGCGCTTTCTGGCAAATGTCAGGGACGGCAG
TGACCAGGATGAAGTCGACGAGTTCATCGCATATCGGGATGAAGACAGTG
GGGAACTTGTCAGGTGCACCGACCTTCAGTCCGCGCTGTGCAACTTTTAC
AGAATGTTGCTCCCGTTTGTCCAACAAAAAGCTCAACGAGTCCGAGAATC
GATGGGGGATGCATTGATTGCCACCGATTATGATGAGATTCTAGTGAACG
AGACCGCTGAGCTCATGTGTGCTATCGTTCTTGCTGGTGCTATTGTCACT
GATGAAGGGAAAGTGTTCAAGGACCTACACGTCAGCTTCTGGACGTCACG
TGGCATTAACGCCCGGGCGTCGGCGCCGTTCGTATCCAGTTGCGAAAAAT
GTCGGGAACTCTTCCTTTCTGAAAACTAG
back to top

protein sequence of Ggra5409.t1

>Ggra5409.t1 ID=Ggra5409.t1|Name=Ggra5409.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=393bp
MSLHVNHIIEFAYEQAITAVVPRSLRRILEDFFVLEERYNVRGIEVLAEM
SASLRDAEDGQDLRRQRSENFIRANKQSAVNMHVCGLVLKMDAKTVSTLR
EVMDAGATSLATIGSAISLLQKFVSPISLIHPAFCTYPTITIGLFFCRAL
HVCLACPDPDIDDEHFMYGDTSTIFLKAVDRLKIRASRLGVQWQWDSMNT
WDEEIGDYGLEIPGEDYAAVYEDFRKTPWVAASKRLISRSEWSLGMRDLA
RSFYVSQRFLANVRDGSDQDEVDEFIAYRDEDSGELVRCTDLQSALCNFY
RMLLPFVQQKAQRVRESMGDALIATDYDEILVNETAELMCAIVLAGAIVT
DEGKVFKDLHVSFWTSRGINARASAPFVSSCEKCRELFLSEN*
back to top

mRNA from alignment at tig00000099_pilon:300227..301495+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5409.t1 ID=Ggra5409.t1|Name=Ggra5409.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000099_pilon:300227..301495+ (Gracilaria gracilis GNS1m male)
ATGTCCCTCCATGTTAATCACATCATCGAATTCGCATACGAACAAGCGAT
CACTGCCGTTGTACCCCGCAGTTTGAGAAGAATTCTAGAGGACTTTTTTG
TTCTTGAGGAACGGTATAACGTTCGCGGAATCGAGGTATTAGCGGAAATG
TCTGCATCGCTCAGGGATGCAGAAGACGGGCAGGACCTTCGAAGACAAAG
GTCGGAGAACTTTATCCGCGCCAACAAGCAGAGCGCAGTGAATATGCACG
TTTGTGGTCTCGTGCTGAAGATGGATGCGAAGACGGTTAGCACTTTGCGA
GAAGTCATGGACGCCGGAGCCACTTCTCTTGCGACCATAGGCTCGGCGAT
ATCACTGTTGCAGAAGTTTGTTTCGCCGATCTCGCTAATTCATCCGGCGT
TCTGCACATATCCAACAATAACGATTGGACTCTTCTTCTGCCGAGCACTC
CATGTCTGTCTGGCGTGCCCCGATCCTGATATTGATGACGAGCATTTCAT
GTACGGCGACACTTCAACTATCTTCCTCAAAGCAGTGGATCGACTTAAAA
TTCGAGCTTCTCGTCTCGGTGTACAATGGCAGTGGGATTCTATGGTGAGC
GATGTAATGCAACTGGGAGAGGCATTTGAAATGATCATCCCTTTCCGTAC
AGTCATACGTCCCGAATATCTTGCGCGTCTTTAGAACACTTGGGACGAGG
AGATTGGGGACTATGGCCTCGAGATCCCCGGCGAAGATTATGCAGCAGTA
TACGAGGATTTTCGAAAAACTCCGTGGGTGGCTGCCTCGAAGAGGCTCAT
CTCTCGTTCGGAATGGTCCTTGGGGATGCGGGATCTTGCTCGCTCATTCT
ACGTTTCCCAGCGCTTTCTGGCAAATGTCAGGGACGGCAGTGACCAGGAT
GAAGTCGACGAGTTCATCGCATATCGGGATGAAGACAGTGGGGAACTTGT
CAGGTGCACCGACCTTCAGTCCGCGCTGTGCAACTTTTACAGAATGTTGC
TCCCGTTTGTCCAACAAAAAGCTCAACGAGTCCGAGAATCGATGGGGGAT
GCATTGATTGCCACCGATTATGATGAGATTCTAGTGAACGAGACCGCTGA
GCTCATGTGTGCTATCGTTCTTGCTGGTGCTATTGTCACTGATGAAGGGA
AAGTGTTCAAGGACCTACACGTCAGCTTCTGGACGTCACGTGGCATTAAC
GCCCGGGCGTCGGCGCCGTTCGTATCCAGTTGCGAAAAATGTCGGGAACT
CTTCCTTTCTGAAAACTAG
back to top

Coding sequence (CDS) from alignment at tig00000099_pilon:300227..301495+

>Ggra5409.t1 ID=Ggra5409.t1|Name=Ggra5409.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00000099_pilon:300227..301495+ (Gracilaria gracilis GNS1m male)
ATGTCCCTCCATGTTAATCACATCATCGAATTCGCATACGAACAAGCGAT
CACTGCCGTTGTACCCCGCAGTTTGAGAAGAATTCTAGAGGACTTTTTTG
TTCTTGAGGAACGGTATAACGTTCGCGGAATCGAGGTATTAGCGGAAATG
TCTGCATCGCTCAGGGATGCAGAAGACGGGCAGGACCTTCGAAGACAAAG
GTCGGAGAACTTTATCCGCGCCAACAAGCAGAGCGCAGTGAATATGCACG
TTTGTGGTCTCGTGCTGAAGATGGATGCGAAGACGGTTAGCACTTTGCGA
GAAGTCATGGACGCCGGAGCCACTTCTCTTGCGACCATAGGCTCGGCGAT
ATCACTGTTGCAGAAGTTTGTTTCGCCGATCTCGCTAATTCATCCGGCGT
TCTGCACATATCCAACAATAACGATTGGACTCTTCTTCTGCCGAGCACTC
CATGTCTGTCTGGCGTGCCCCGATCCTGATATTGATGACGAGCATTTCAT
GTACGGCGACACTTCAACTATCTTCCTCAAAGCAGTGGATCGACTTAAAA
TTCGAGCTTCTCGTCTCGGTGTACAATGGCAGTGGGATTCTATGAACACT
TGGGACGAGGAGATTGGGGACTATGGCCTCGAGATCCCCGGCGAAGATTA
TGCAGCAGTATACGAGGATTTTCGAAAAACTCCGTGGGTGGCTGCCTCGA
AGAGGCTCATCTCTCGTTCGGAATGGTCCTTGGGGATGCGGGATCTTGCT
CGCTCATTCTACGTTTCCCAGCGCTTTCTGGCAAATGTCAGGGACGGCAG
TGACCAGGATGAAGTCGACGAGTTCATCGCATATCGGGATGAAGACAGTG
GGGAACTTGTCAGGTGCACCGACCTTCAGTCCGCGCTGTGCAACTTTTAC
AGAATGTTGCTCCCGTTTGTCCAACAAAAAGCTCAACGAGTCCGAGAATC
GATGGGGGATGCATTGATTGCCACCGATTATGATGAGATTCTAGTGAACG
AGACCGCTGAGCTCATGTGTGCTATCGTTCTTGCTGGTGCTATTGTCACT
GATGAAGGGAAAGTGTTCAAGGACCTACACGTCAGCTTCTGGACGTCACG
TGGCATTAACGCCCGGGCGTCGGCGCCGTTCGTATCCAGTTGCGAAAAAT
GTCGGGAACTCTTCCTTTCTGAAAACTAG
back to top