Ggra5408.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5408.t1
Unique Name	Ggra5408.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	536

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000099_pilon	contig	tig00000099_pilon:284079..285686 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5408	Ggra5408	Gracilaria gracilis GNS1m male	gene	tig00000099_pilon 284079..285686 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5408.t1.start1	Ggra5408.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000099_pilon 284079..284081 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5408.t1.CDS1	Ggra5408.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000099_pilon 284079..285686 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5408.t1.exon1	Ggra5408.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000099_pilon 284079..285686 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5408.t1.stop1	Ggra5408.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000099_pilon 285684..285686 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5408.t1	Ggra5408.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000099_pilon 284079..285686 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000099_pilon:284079..285686+
coding sequence from alignment at tig00000099_pilon:284079..285686+

mRNA sequence

>Ggra5408.t1 ID=Ggra5408.t1|Name=Ggra5408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MAVNQDRETKTNSWSWEQDCILRDALQEARCEGIEDYAQLSFWKRMESHK
LLPDGQSADECLARSQHLLQSEKPPHRSPQDKIVTKVSPSNNAPSHAVER
ASIISNMASESKVDPKGLVVNLLDNSADEKEVLRGNQEYRASKLELENQL
EFEAGGDLGYCARTLFSLSNIPEVGMVLNTTEVKENLYKRLRKVFGSPKS
VEVIVHLNENSACVHLDGIMGKIRTILSLNIITQCDLSDLLESSHTFFEQ
ESLSKALKNCGYSLLKILLDVVKVMVSQRPDRSGEVTELYRGCVSRFREW
GCLEFFAGRSGETIVSDQIKELKQFILNKHNGMLQTMVPAEKEIRGKLSE
LAGISCTTRKRCQRYFAQQTTSPQNPQRGQANENLSRATVMEVPDFFSDK
DEAGELDGKETYADRKTPLKSTREHPGARPDSVKLPTTKKGEEFARTGHY
SPKEDALIRDGIAKFGFGKWIPISKLFEKHGILRQPMSIKDRARSLGMSS
DKKRKRAPTAPRRQKPKKIRFFESDDSFEELHGFD*

spliced messenger RNA

>Ggra5408.t1 ID=Ggra5408.t1|Name=Ggra5408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000099_pilon:284079..285686+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTCAATCAAGATCGAGAAACGAAGACGAATTCTTGGAGCTGGGA
ACAAGATTGTATTCTAAGGGACGCACTTCAGGAAGCGCGGTGCGAAGGAA
TCGAGGACTATGCACAATTGTCATTCTGGAAACGCATGGAATCCCATAAA
CTTCTACCGGATGGACAAAGTGCAGATGAATGTCTGGCGCGAAGCCAGCA
TCTTCTTCAATCCGAAAAGCCTCCTCATCGAAGCCCACAGGATAAGATCG
TCACTAAGGTCTCACCTTCCAACAATGCTCCCAGTCATGCGGTGGAACGC
GCTTCAATAATAAGCAACATGGCTTCTGAATCTAAAGTGGATCCGAAAGG
CTTGGTTGTGAACCTTTTGGATAACTCGGCCGACGAGAAAGAAGTTCTGA
GGGGAAATCAGGAATATAGAGCTTCCAAATTAGAGCTCGAGAATCAGTTA
GAGTTTGAGGCTGGCGGGGATCTTGGATACTGTGCTCGGACTCTATTCTC
ACTTTCTAACATTCCAGAGGTTGGAATGGTGCTGAACACGACGGAAGTTA
AGGAGAACTTATACAAACGGTTAAGGAAAGTGTTTGGATCTCCAAAAAGT
GTGGAAGTGATTGTTCATTTGAATGAGAACTCGGCTTGTGTTCACCTTGA
CGGCATCATGGGGAAAATTAGAACCATTCTAAGTCTGAATATTATCACCC
AATGTGATTTGTCCGACCTTTTAGAGAGTTCACATACCTTTTTTGAGCAA
GAGTCCTTATCGAAGGCGCTGAAAAACTGTGGTTACTCTCTGCTGAAGAT
ATTGCTGGACGTTGTGAAGGTTATGGTCAGCCAACGTCCTGATCGAAGTG
GAGAGGTGACGGAATTGTATCGTGGCTGTGTATCCCGATTTCGTGAATGG
GGATGTTTGGAGTTTTTCGCTGGACGTTCGGGAGAAACCATTGTTTCAGA
TCAGATCAAAGAATTGAAGCAATTTATCCTGAACAAACACAATGGTATGC
TTCAAACAATGGTACCTGCAGAAAAGGAGATTCGAGGAAAACTGTCGGAA
TTGGCAGGCATATCTTGCACGACGCGAAAGAGGTGCCAAAGGTATTTTGC
TCAACAAACCACTTCTCCTCAAAATCCCCAACGTGGCCAGGCAAATGAAA
ATCTCTCTCGAGCGACTGTAATGGAGGTCCCTGACTTCTTTTCTGATAAG
GACGAAGCTGGAGAGTTGGATGGAAAGGAAACATATGCAGATCGTAAAAC
GCCGTTGAAGAGTACGAGGGAACATCCTGGGGCACGTCCAGATAGTGTGA
AGCTTCCAACAACGAAAAAAGGTGAAGAGTTTGCAAGAACTGGGCACTAT
TCCCCGAAGGAAGATGCATTGATACGAGACGGAATTGCGAAGTTTGGCTT
TGGGAAATGGATTCCGATATCTAAGCTTTTTGAAAAACATGGCATTCTCC
GCCAACCAATGAGTATTAAGGATAGAGCTCGTTCTCTTGGAATGAGTTCT
GATAAGAAGCGCAAAAGGGCCCCAACTGCTCCAAGACGTCAAAAACCCAA
GAAAATAAGGTTTTTTGAATCCGATGACTCATTTGAAGAGCTACATGGCT
TTGATTAG

protein sequence of Ggra5408.t1

>Ggra5408.t1 ID=Ggra5408.t1|Name=Ggra5408.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MAVNQDRETKTNSWSWEQDCILRDALQEARCEGIEDYAQLSFWKRMESHK
LLPDGQSADECLARSQHLLQSEKPPHRSPQDKIVTKVSPSNNAPSHAVER
ASIISNMASESKVDPKGLVVNLLDNSADEKEVLRGNQEYRASKLELENQL
EFEAGGDLGYCARTLFSLSNIPEVGMVLNTTEVKENLYKRLRKVFGSPKS
VEVIVHLNENSACVHLDGIMGKIRTILSLNIITQCDLSDLLESSHTFFEQ
ESLSKALKNCGYSLLKILLDVVKVMVSQRPDRSGEVTELYRGCVSRFREW
GCLEFFAGRSGETIVSDQIKELKQFILNKHNGMLQTMVPAEKEIRGKLSE
LAGISCTTRKRCQRYFAQQTTSPQNPQRGQANENLSRATVMEVPDFFSDK
DEAGELDGKETYADRKTPLKSTREHPGARPDSVKLPTTKKGEEFARTGHY
SPKEDALIRDGIAKFGFGKWIPISKLFEKHGILRQPMSIKDRARSLGMSS
DKKRKRAPTAPRRQKPKKIRFFESDDSFEELHGFD*

mRNA from alignment at tig00000099_pilon:284079..285686+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5408.t1 ID=Ggra5408.t1|Name=Ggra5408.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000099_pilon:284079..285686+ (Gracilaria gracilis GNS1m male)
ATGGCTGTCAATCAAGATCGAGAAACGAAGACGAATTCTTGGAGCTGGGA
ACAAGATTGTATTCTAAGGGACGCACTTCAGGAAGCGCGGTGCGAAGGAA
TCGAGGACTATGCACAATTGTCATTCTGGAAACGCATGGAATCCCATAAA
CTTCTACCGGATGGACAAAGTGCAGATGAATGTCTGGCGCGAAGCCAGCA
TCTTCTTCAATCCGAAAAGCCTCCTCATCGAAGCCCACAGGATAAGATCG
TCACTAAGGTCTCACCTTCCAACAATGCTCCCAGTCATGCGGTGGAACGC
GCTTCAATAATAAGCAACATGGCTTCTGAATCTAAAGTGGATCCGAAAGG
CTTGGTTGTGAACCTTTTGGATAACTCGGCCGACGAGAAAGAAGTTCTGA
GGGGAAATCAGGAATATAGAGCTTCCAAATTAGAGCTCGAGAATCAGTTA
GAGTTTGAGGCTGGCGGGGATCTTGGATACTGTGCTCGGACTCTATTCTC
ACTTTCTAACATTCCAGAGGTTGGAATGGTGCTGAACACGACGGAAGTTA
AGGAGAACTTATACAAACGGTTAAGGAAAGTGTTTGGATCTCCAAAAAGT
GTGGAAGTGATTGTTCATTTGAATGAGAACTCGGCTTGTGTTCACCTTGA
CGGCATCATGGGGAAAATTAGAACCATTCTAAGTCTGAATATTATCACCC
AATGTGATTTGTCCGACCTTTTAGAGAGTTCACATACCTTTTTTGAGCAA
GAGTCCTTATCGAAGGCGCTGAAAAACTGTGGTTACTCTCTGCTGAAGAT
ATTGCTGGACGTTGTGAAGGTTATGGTCAGCCAACGTCCTGATCGAAGTG
GAGAGGTGACGGAATTGTATCGTGGCTGTGTATCCCGATTTCGTGAATGG
GGATGTTTGGAGTTTTTCGCTGGACGTTCGGGAGAAACCATTGTTTCAGA
TCAGATCAAAGAATTGAAGCAATTTATCCTGAACAAACACAATGGTATGC
TTCAAACAATGGTACCTGCAGAAAAGGAGATTCGAGGAAAACTGTCGGAA
TTGGCAGGCATATCTTGCACGACGCGAAAGAGGTGCCAAAGGTATTTTGC
TCAACAAACCACTTCTCCTCAAAATCCCCAACGTGGCCAGGCAAATGAAA
ATCTCTCTCGAGCGACTGTAATGGAGGTCCCTGACTTCTTTTCTGATAAG
GACGAAGCTGGAGAGTTGGATGGAAAGGAAACATATGCAGATCGTAAAAC
GCCGTTGAAGAGTACGAGGGAACATCCTGGGGCACGTCCAGATAGTGTGA
AGCTTCCAACAACGAAAAAAGGTGAAGAGTTTGCAAGAACTGGGCACTAT
TCCCCGAAGGAAGATGCATTGATACGAGACGGAATTGCGAAGTTTGGCTT
TGGGAAATGGATTCCGATATCTAAGCTTTTTGAAAAACATGGCATTCTCC
GCCAACCAATGAGTATTAAGGATAGAGCTCGTTCTCTTGGAATGAGTTCT
GATAAGAAGCGCAAAAGGGCCCCAACTGCTCCAAGACGTCAAAAACCCAA
GAAAATAAGGTTTTTTGAATCCGATGACTCATTTGAAGAGCTACATGGCT
TTGATTAG

Coding sequence (CDS) from alignment at tig00000099_pilon:284079..285686+

>Ggra5408.t1 ID=Ggra5408.t1|Name=Ggra5408.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000099_pilon:284079..285686+ (Gracilaria gracilis GNS1m male)
ATGGCTGTCAATCAAGATCGAGAAACGAAGACGAATTCTTGGAGCTGGGA
ACAAGATTGTATTCTAAGGGACGCACTTCAGGAAGCGCGGTGCGAAGGAA
TCGAGGACTATGCACAATTGTCATTCTGGAAACGCATGGAATCCCATAAA
CTTCTACCGGATGGACAAAGTGCAGATGAATGTCTGGCGCGAAGCCAGCA
TCTTCTTCAATCCGAAAAGCCTCCTCATCGAAGCCCACAGGATAAGATCG
TCACTAAGGTCTCACCTTCCAACAATGCTCCCAGTCATGCGGTGGAACGC
GCTTCAATAATAAGCAACATGGCTTCTGAATCTAAAGTGGATCCGAAAGG
CTTGGTTGTGAACCTTTTGGATAACTCGGCCGACGAGAAAGAAGTTCTGA
GGGGAAATCAGGAATATAGAGCTTCCAAATTAGAGCTCGAGAATCAGTTA
GAGTTTGAGGCTGGCGGGGATCTTGGATACTGTGCTCGGACTCTATTCTC
ACTTTCTAACATTCCAGAGGTTGGAATGGTGCTGAACACGACGGAAGTTA
AGGAGAACTTATACAAACGGTTAAGGAAAGTGTTTGGATCTCCAAAAAGT
GTGGAAGTGATTGTTCATTTGAATGAGAACTCGGCTTGTGTTCACCTTGA
CGGCATCATGGGGAAAATTAGAACCATTCTAAGTCTGAATATTATCACCC
AATGTGATTTGTCCGACCTTTTAGAGAGTTCACATACCTTTTTTGAGCAA
GAGTCCTTATCGAAGGCGCTGAAAAACTGTGGTTACTCTCTGCTGAAGAT
ATTGCTGGACGTTGTGAAGGTTATGGTCAGCCAACGTCCTGATCGAAGTG
GAGAGGTGACGGAATTGTATCGTGGCTGTGTATCCCGATTTCGTGAATGG
GGATGTTTGGAGTTTTTCGCTGGACGTTCGGGAGAAACCATTGTTTCAGA
TCAGATCAAAGAATTGAAGCAATTTATCCTGAACAAACACAATGGTATGC
TTCAAACAATGGTACCTGCAGAAAAGGAGATTCGAGGAAAACTGTCGGAA
TTGGCAGGCATATCTTGCACGACGCGAAAGAGGTGCCAAAGGTATTTTGC
TCAACAAACCACTTCTCCTCAAAATCCCCAACGTGGCCAGGCAAATGAAA
ATCTCTCTCGAGCGACTGTAATGGAGGTCCCTGACTTCTTTTCTGATAAG
GACGAAGCTGGAGAGTTGGATGGAAAGGAAACATATGCAGATCGTAAAAC
GCCGTTGAAGAGTACGAGGGAACATCCTGGGGCACGTCCAGATAGTGTGA
AGCTTCCAACAACGAAAAAAGGTGAAGAGTTTGCAAGAACTGGGCACTAT
TCCCCGAAGGAAGATGCATTGATACGAGACGGAATTGCGAAGTTTGGCTT
TGGGAAATGGATTCCGATATCTAAGCTTTTTGAAAAACATGGCATTCTCC
GCCAACCAATGAGTATTAAGGATAGAGCTCGTTCTCTTGGAATGAGTTCT
GATAAGAAGCGCAAAAGGGCCCCAACTGCTCCAAGACGTCAAAAACCCAA
GAAAATAAGGTTTTTTGAATCCGATGACTCATTTGAAGAGCTACATGGCT
TTGATTAG