Ggra5403.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5403.t1
Unique NameGgra5403.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length291
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:241927..242799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5403Ggra5403Gracilaria gracilis GNS1m malegenetig00000099_pilon 241927..242799 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5403.t1.stop1Ggra5403.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 241927..241929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5403.t1.CDS1Ggra5403.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 241927..242799 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5403.t1.exon1Ggra5403.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 241927..242799 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5403.t1.start1Ggra5403.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 242797..242799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5403.t1Ggra5403.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 241927..242799 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5403.t1 ID=Ggra5403.t1|Name=Ggra5403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=291bp
MDFLEKGQRALHPHMTFDKPGDMKKYINGLADSCFSLKTIAVMAVTEGAK
MDALIEELCVAAGLTPAQALQSAPQNKDSEQPTPKSAQPTYSSIVQNHKP
KTPAPKPTHLPHLHTDMAEPQNDIDFDTVPMARRGVRSVVRSTVDICGYV
KKPFLSLTTPNDLPSLQNPSRIINLIAYGGLRKPLTIVITDNPRKFLVMG
AKNGLPLVQPAYERARQFLKRHCSFQRLPPINVEPVDDLLHVCNTSADVL
QMIYAFSREIQRLENKDATWRLRFYFAKALREFEKRCFLK*
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spliced messenger RNA

>Ggra5403.t1 ID=Ggra5403.t1|Name=Ggra5403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000099_pilon:241927..242799- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTCTTGGAAAAAGGCCAGCGCGCCCTCCACCCGCACATGACGTT
CGACAAGCCAGGAGATATGAAAAAGTATATCAACGGCCTCGCTGACTCTT
GTTTCAGCCTAAAGACTATCGCAGTTATGGCTGTAACGGAGGGCGCCAAA
ATGGACGCTCTCATTGAAGAACTCTGTGTGGCCGCTGGCCTAACTCCAGC
TCAAGCACTTCAAAGTGCACCGCAAAACAAGGACTCTGAACAACCGACTC
CGAAGTCAGCGCAGCCAACGTACTCGTCTATTGTCCAGAATCATAAACCG
AAAACTCCTGCCCCCAAACCCACACATCTTCCACACCTGCATACCGACAT
GGCCGAGCCCCAAAACGACATTGATTTCGACACGGTGCCTATGGCCCGTA
GAGGCGTTAGGAGTGTGGTGCGCTCCACTGTTGATATATGTGGATATGTG
AAAAAGCCATTCCTTTCCCTCACAACGCCGAACGATCTGCCATCGCTCCA
AAACCCTTCCCGCATTATTAATCTCATCGCTTATGGAGGCCTACGTAAGC
CACTCACTATCGTGATCACAGATAACCCTCGCAAGTTCTTGGTCATGGGG
GCCAAGAATGGTCTCCCCCTAGTCCAACCAGCCTACGAACGGGCCCGACA
GTTTCTAAAACGCCACTGCAGTTTCCAGCGACTTCCGCCGATCAATGTAG
AGCCCGTCGACGATCTTCTACACGTCTGCAATACATCAGCAGATGTTTTG
CAAATGATATACGCATTCAGCCGCGAAATCCAACGCCTCGAGAACAAAGA
TGCCACTTGGCGCCTTCGCTTTTACTTTGCGAAGGCACTTCGTGAATTTG
AAAAACGCTGTTTCTTGAAGTAG
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protein sequence of Ggra5403.t1

>Ggra5403.t1 ID=Ggra5403.t1|Name=Ggra5403.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=291bp
MDFLEKGQRALHPHMTFDKPGDMKKYINGLADSCFSLKTIAVMAVTEGAK
MDALIEELCVAAGLTPAQALQSAPQNKDSEQPTPKSAQPTYSSIVQNHKP
KTPAPKPTHLPHLHTDMAEPQNDIDFDTVPMARRGVRSVVRSTVDICGYV
KKPFLSLTTPNDLPSLQNPSRIINLIAYGGLRKPLTIVITDNPRKFLVMG
AKNGLPLVQPAYERARQFLKRHCSFQRLPPINVEPVDDLLHVCNTSADVL
QMIYAFSREIQRLENKDATWRLRFYFAKALREFEKRCFLK*
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mRNA from alignment at tig00000099_pilon:241927..242799-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5403.t1 ID=Ggra5403.t1|Name=Ggra5403.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=873bp|location=Sequence derived from alignment at tig00000099_pilon:241927..242799- (Gracilaria gracilis GNS1m male)
ATGGATTTCTTGGAAAAAGGCCAGCGCGCCCTCCACCCGCACATGACGTT
CGACAAGCCAGGAGATATGAAAAAGTATATCAACGGCCTCGCTGACTCTT
GTTTCAGCCTAAAGACTATCGCAGTTATGGCTGTAACGGAGGGCGCCAAA
ATGGACGCTCTCATTGAAGAACTCTGTGTGGCCGCTGGCCTAACTCCAGC
TCAAGCACTTCAAAGTGCACCGCAAAACAAGGACTCTGAACAACCGACTC
CGAAGTCAGCGCAGCCAACGTACTCGTCTATTGTCCAGAATCATAAACCG
AAAACTCCTGCCCCCAAACCCACACATCTTCCACACCTGCATACCGACAT
GGCCGAGCCCCAAAACGACATTGATTTCGACACGGTGCCTATGGCCCGTA
GAGGCGTTAGGAGTGTGGTGCGCTCCACTGTTGATATATGTGGATATGTG
AAAAAGCCATTCCTTTCCCTCACAACGCCGAACGATCTGCCATCGCTCCA
AAACCCTTCCCGCATTATTAATCTCATCGCTTATGGAGGCCTACGTAAGC
CACTCACTATCGTGATCACAGATAACCCTCGCAAGTTCTTGGTCATGGGG
GCCAAGAATGGTCTCCCCCTAGTCCAACCAGCCTACGAACGGGCCCGACA
GTTTCTAAAACGCCACTGCAGTTTCCAGCGACTTCCGCCGATCAATGTAG
AGCCCGTCGACGATCTTCTACACGTCTGCAATACATCAGCAGATGTTTTG
CAAATGATATACGCATTCAGCCGCGAAATCCAACGCCTCGAGAACAAAGA
TGCCACTTGGCGCCTTCGCTTTTACTTTGCGAAGGCACTTCGTGAATTTG
AAAAACGCTGTTTCTTGAAGTAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:241927..242799-

>Ggra5403.t1 ID=Ggra5403.t1|Name=Ggra5403.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=873bp|location=Sequence derived from alignment at tig00000099_pilon:241927..242799- (Gracilaria gracilis GNS1m male)
ATGGATTTCTTGGAAAAAGGCCAGCGCGCCCTCCACCCGCACATGACGTT
CGACAAGCCAGGAGATATGAAAAAGTATATCAACGGCCTCGCTGACTCTT
GTTTCAGCCTAAAGACTATCGCAGTTATGGCTGTAACGGAGGGCGCCAAA
ATGGACGCTCTCATTGAAGAACTCTGTGTGGCCGCTGGCCTAACTCCAGC
TCAAGCACTTCAAAGTGCACCGCAAAACAAGGACTCTGAACAACCGACTC
CGAAGTCAGCGCAGCCAACGTACTCGTCTATTGTCCAGAATCATAAACCG
AAAACTCCTGCCCCCAAACCCACACATCTTCCACACCTGCATACCGACAT
GGCCGAGCCCCAAAACGACATTGATTTCGACACGGTGCCTATGGCCCGTA
GAGGCGTTAGGAGTGTGGTGCGCTCCACTGTTGATATATGTGGATATGTG
AAAAAGCCATTCCTTTCCCTCACAACGCCGAACGATCTGCCATCGCTCCA
AAACCCTTCCCGCATTATTAATCTCATCGCTTATGGAGGCCTACGTAAGC
CACTCACTATCGTGATCACAGATAACCCTCGCAAGTTCTTGGTCATGGGG
GCCAAGAATGGTCTCCCCCTAGTCCAACCAGCCTACGAACGGGCCCGACA
GTTTCTAAAACGCCACTGCAGTTTCCAGCGACTTCCGCCGATCAATGTAG
AGCCCGTCGACGATCTTCTACACGTCTGCAATACATCAGCAGATGTTTTG
CAAATGATATACGCATTCAGCCGCGAAATCCAACGCCTCGAGAACAAAGA
TGCCACTTGGCGCCTTCGCTTTTACTTTGCGAAGGCACTTCGTGAATTTG
AAAAACGCTGTTTCTTGAAGTAG
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