Ggra5401.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5401.t1
Unique NameGgra5401.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:214941..215867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5401Ggra5401Gracilaria gracilis GNS1m malegenetig00000099_pilon 214941..215867 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5401.t1.stop1Ggra5401.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 214941..214943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5401.t1.CDS1Ggra5401.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 214941..215867 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5401.t1.exon1Ggra5401.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 214941..215867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5401.t1.start1Ggra5401.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 215865..215867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5401.t1Ggra5401.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 214941..215867 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5401.t1 ID=Ggra5401.t1|Name=Ggra5401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MNSIHTSPVMFDVCSKIVSRLVSANVQGATFPGILPIRNMRTAALPATNK
RWRHPSEYPPYQNFPSHKLTSLSSLWEGSSSIKTVTGSPFQAWPRPFQGL
LQQVDLQNLLVIDGAAHNLFVARSSIKNLFAGKGVFASKTFVKRKKVCSY
YGTLVYHNLNVRHSSPTSSASCNHVYGDGVLAAKCSGFAEYVIQVHCQGP
AFRHVKEMETGIKCVYIVRYNFCIGAYINYYDYHQLDEEFHACKDDEHFQ
KMRCRTPNVEFSVPNGHVTDPQSLFNHSVVTVFATSTINPGDELFANYDK
HDFVTATT*
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spliced messenger RNA

>Ggra5401.t1 ID=Ggra5401.t1|Name=Ggra5401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:214941..215867- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAGCATTCACACCTCCCCTGTCATGTTTGACGTCTGCTCAAAAAT
CGTTAGCCGACTGGTTTCTGCGAACGTTCAAGGTGCTACTTTCCCCGGAA
TCCTCCCCATCCGCAACATGAGAACAGCAGCATTGCCTGCTACGAATAAA
CGATGGAGACACCCTTCTGAATATCCCCCTTACCAGAACTTTCCATCCCA
CAAACTCACGTCATTGAGCTCGTTGTGGGAGGGTTCTTCGTCTATCAAGA
CTGTAACAGGCTCTCCGTTCCAAGCCTGGCCTAGACCTTTTCAAGGTCTT
CTCCAGCAAGTCGATTTGCAAAACCTGCTGGTCATCGACGGCGCAGCTCA
CAACTTATTTGTTGCACGGAGTTCTATCAAGAATCTCTTCGCTGGTAAGG
GTGTATTTGCAAGCAAAACCTTCGTCAAAAGGAAAAAGGTGTGTTCTTAC
TATGGAACCCTGGTATATCACAACCTTAACGTTCGACACAGTTCACCAAC
TTCTTCCGCATCTTGCAATCACGTATATGGCGATGGTGTACTTGCCGCTA
AGTGCTCGGGCTTTGCAGAATACGTAATTCAAGTTCACTGCCAAGGTCCT
GCCTTCCGGCATGTGAAGGAAATGGAAACCGGTATTAAATGCGTCTATAT
CGTCCGTTACAATTTTTGTATCGGGGCCTACATCAACTATTATGATTATC
ACCAACTTGATGAAGAGTTTCATGCTTGTAAGGACGATGAGCACTTCCAG
AAAATGAGATGTCGTACACCGAACGTGGAATTTAGCGTTCCTAATGGACA
TGTTACTGACCCGCAAAGCCTCTTCAATCATTCTGTTGTTACGGTATTCG
CCACCAGCACTATTAATCCGGGCGATGAACTCTTTGCCAACTACGACAAG
CATGATTTTGTCACTGCTACCACCTAG
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protein sequence of Ggra5401.t1

>Ggra5401.t1 ID=Ggra5401.t1|Name=Ggra5401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MNSIHTSPVMFDVCSKIVSRLVSANVQGATFPGILPIRNMRTAALPATNK
RWRHPSEYPPYQNFPSHKLTSLSSLWEGSSSIKTVTGSPFQAWPRPFQGL
LQQVDLQNLLVIDGAAHNLFVARSSIKNLFAGKGVFASKTFVKRKKVCSY
YGTLVYHNLNVRHSSPTSSASCNHVYGDGVLAAKCSGFAEYVIQVHCQGP
AFRHVKEMETGIKCVYIVRYNFCIGAYINYYDYHQLDEEFHACKDDEHFQ
KMRCRTPNVEFSVPNGHVTDPQSLFNHSVVTVFATSTINPGDELFANYDK
HDFVTATT*
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mRNA from alignment at tig00000099_pilon:214941..215867-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5401.t1 ID=Ggra5401.t1|Name=Ggra5401.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:214941..215867- (Gracilaria gracilis GNS1m male)
ATGAATAGCATTCACACCTCCCCTGTCATGTTTGACGTCTGCTCAAAAAT
CGTTAGCCGACTGGTTTCTGCGAACGTTCAAGGTGCTACTTTCCCCGGAA
TCCTCCCCATCCGCAACATGAGAACAGCAGCATTGCCTGCTACGAATAAA
CGATGGAGACACCCTTCTGAATATCCCCCTTACCAGAACTTTCCATCCCA
CAAACTCACGTCATTGAGCTCGTTGTGGGAGGGTTCTTCGTCTATCAAGA
CTGTAACAGGCTCTCCGTTCCAAGCCTGGCCTAGACCTTTTCAAGGTCTT
CTCCAGCAAGTCGATTTGCAAAACCTGCTGGTCATCGACGGCGCAGCTCA
CAACTTATTTGTTGCACGGAGTTCTATCAAGAATCTCTTCGCTGGTAAGG
GTGTATTTGCAAGCAAAACCTTCGTCAAAAGGAAAAAGGTGTGTTCTTAC
TATGGAACCCTGGTATATCACAACCTTAACGTTCGACACAGTTCACCAAC
TTCTTCCGCATCTTGCAATCACGTATATGGCGATGGTGTACTTGCCGCTA
AGTGCTCGGGCTTTGCAGAATACGTAATTCAAGTTCACTGCCAAGGTCCT
GCCTTCCGGCATGTGAAGGAAATGGAAACCGGTATTAAATGCGTCTATAT
CGTCCGTTACAATTTTTGTATCGGGGCCTACATCAACTATTATGATTATC
ACCAACTTGATGAAGAGTTTCATGCTTGTAAGGACGATGAGCACTTCCAG
AAAATGAGATGTCGTACACCGAACGTGGAATTTAGCGTTCCTAATGGACA
TGTTACTGACCCGCAAAGCCTCTTCAATCATTCTGTTGTTACGGTATTCG
CCACCAGCACTATTAATCCGGGCGATGAACTCTTTGCCAACTACGACAAG
CATGATTTTGTCACTGCTACCACCTAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:214941..215867-

>Ggra5401.t1 ID=Ggra5401.t1|Name=Ggra5401.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000099_pilon:214941..215867- (Gracilaria gracilis GNS1m male)
ATGAATAGCATTCACACCTCCCCTGTCATGTTTGACGTCTGCTCAAAAAT
CGTTAGCCGACTGGTTTCTGCGAACGTTCAAGGTGCTACTTTCCCCGGAA
TCCTCCCCATCCGCAACATGAGAACAGCAGCATTGCCTGCTACGAATAAA
CGATGGAGACACCCTTCTGAATATCCCCCTTACCAGAACTTTCCATCCCA
CAAACTCACGTCATTGAGCTCGTTGTGGGAGGGTTCTTCGTCTATCAAGA
CTGTAACAGGCTCTCCGTTCCAAGCCTGGCCTAGACCTTTTCAAGGTCTT
CTCCAGCAAGTCGATTTGCAAAACCTGCTGGTCATCGACGGCGCAGCTCA
CAACTTATTTGTTGCACGGAGTTCTATCAAGAATCTCTTCGCTGGTAAGG
GTGTATTTGCAAGCAAAACCTTCGTCAAAAGGAAAAAGGTGTGTTCTTAC
TATGGAACCCTGGTATATCACAACCTTAACGTTCGACACAGTTCACCAAC
TTCTTCCGCATCTTGCAATCACGTATATGGCGATGGTGTACTTGCCGCTA
AGTGCTCGGGCTTTGCAGAATACGTAATTCAAGTTCACTGCCAAGGTCCT
GCCTTCCGGCATGTGAAGGAAATGGAAACCGGTATTAAATGCGTCTATAT
CGTCCGTTACAATTTTTGTATCGGGGCCTACATCAACTATTATGATTATC
ACCAACTTGATGAAGAGTTTCATGCTTGTAAGGACGATGAGCACTTCCAG
AAAATGAGATGTCGTACACCGAACGTGGAATTTAGCGTTCCTAATGGACA
TGTTACTGACCCGCAAAGCCTCTTCAATCATTCTGTTGTTACGGTATTCG
CCACCAGCACTATTAATCCGGGCGATGAACTCTTTGCCAACTACGACAAG
CATGATTTTGTCACTGCTACCACCTAG
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