Ggra5399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5399.t1
Unique Name	Ggra5399.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	618

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000099_pilon	contig	tig00000099_pilon:193374..195227 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5399	Ggra5399	Gracilaria gracilis GNS1m male	gene	tig00000099_pilon 193374..195227 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5399.t1.stop1	Ggra5399.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000099_pilon 193374..193376 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5399.t1.CDS1	Ggra5399.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000099_pilon 193374..195227 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5399.t1.exon1	Ggra5399.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000099_pilon 193374..195227 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5399.t1.start1	Ggra5399.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000099_pilon 195225..195227 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5399.t1	Ggra5399.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000099_pilon 193374..195227 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000099_pilon:193374..195227-
coding sequence from alignment at tig00000099_pilon:193374..195227-

mRNA sequence

>Ggra5399.t1 ID=Ggra5399.t1|Name=Ggra5399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=618bp
MERSVMVMKNTKNVNKRKKNKPRKKNNKCNEVKNVGDLKNVLNQFLDWTK
SRPGTGSSCALEEISKTFQTSVSPRSKRSLSPPTRPTEEKYFSSLRHLNP
LAPQVCARKKSISKKVKSRLSLEMKEKVITTKPSKSNLGCIFDWYNVWNQ
PGKKNSVRSGSANGSSVEANAASILLHLSKAPKPSHKRRSIDFNFFFLLA
NLGNLKSSSTWFHNGSWCAGRDWIFPSFRAICDEWNIGNMDKVVQVYSSL
ALKANLPRFDTALKIRSIESSYTNFEEFHKSENLAFNAVRMKCWEAIEKV
PVDELLHLSDTQLASQKMLMWSNNSCGLDCCLFQIPKAVRMLVRKCLCDQ
SFFSRGSIASIVVGRLNISDRGWKGRMFDSLNFSNWTRALSLDAYEYITK
RPLPDWLKWSPFHGDQQYLDMSNLMTLFFPAMFKKISPRPTLPFRTITRI
VRGRDLEAVRSVSSGWRWFLERELDMEAVKTVGIRVVSLPSVGIKDKKFF
INKWIKSNTTVKAERSQSTIEVSMLSWMGYSNTVKDHFVAFRVENDLSRQ
SISYYDGLRNNGKPRLIDVDEIDTGTAPFIPSAAHAVFLLSSGSSTLQLY
LNETKISLLASLHCLCS*

spliced messenger RNA

>Ggra5399.t1 ID=Ggra5399.t1|Name=Ggra5399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00000099_pilon:193374..195227- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAGAAGTGTTATGGTCATGAAGAATACGAAAAACGTGAATAAAAG
AAAAAAGAACAAACCCAGGAAGAAGAACAACAAATGCAACGAAGTTAAAA
ATGTAGGTGACCTCAAGAATGTGCTTAATCAGTTTTTGGATTGGACAAAG
AGCAGACCTGGTACTGGATCGAGTTGTGCTTTAGAGGAAATTTCAAAAAC
ATTTCAAACAAGCGTGTCACCAAGATCTAAAAGAAGCCTTTCACCGCCAA
CAAGACCGACAGAAGAGAAGTACTTCTCCTCTTTGAGGCATTTGAATCCG
CTTGCACCTCAAGTTTGCGCCCGAAAGAAATCAATTTCAAAGAAGGTAAA
ATCAAGGCTATCCTTAGAGATGAAGGAAAAAGTGATTACAACTAAACCAT
CAAAGTCAAACTTGGGTTGCATTTTTGATTGGTACAATGTTTGGAATCAG
CCCGGAAAGAAGAACAGCGTCCGTTCTGGATCTGCAAATGGCAGCAGCGT
CGAAGCGAATGCAGCCTCTATTCTCCTTCACCTAAGCAAGGCTCCAAAAC
CAAGTCATAAACGTCGCTCTATTGACTTCAACTTTTTCTTCCTATTGGCA
AACTTGGGAAATCTGAAGTCGAGTTCCACATGGTTTCATAATGGGTCATG
GTGTGCCGGGCGTGATTGGATATTTCCCTCGTTTCGCGCAATCTGTGATG
AGTGGAACATTGGAAACATGGACAAGGTCGTCCAAGTGTACTCGTCACTT
GCCTTGAAAGCGAATCTTCCTAGGTTTGACACCGCCTTGAAAATTCGAAG
CATAGAGAGTTCGTACACAAATTTTGAAGAGTTCCACAAATCGGAAAACC
TTGCTTTCAATGCTGTGAGGATGAAGTGCTGGGAAGCTATCGAAAAAGTT
CCTGTAGACGAACTGCTACATCTTTCTGACACCCAACTTGCTTCACAAAA
AATGCTGATGTGGTCGAACAATTCATGTGGTCTGGACTGCTGCTTGTTTC
AGATTCCAAAAGCCGTACGCATGCTTGTCAGAAAATGTTTGTGTGACCAG
TCTTTCTTCAGCAGGGGAAGCATTGCTTCTATTGTCGTTGGTCGTTTGAA
TATCAGTGATCGGGGCTGGAAGGGGAGGATGTTTGATTCACTAAATTTTT
CAAACTGGACAAGGGCTCTAAGTTTGGACGCTTATGAGTATATCACGAAA
CGCCCACTTCCAGACTGGCTGAAATGGTCTCCATTTCATGGCGATCAACA
GTATCTGGATATGTCGAATCTGATGACTCTTTTCTTTCCGGCCATGTTCA
AAAAGATAAGTCCACGACCAACATTACCATTTCGTACTATCACCCGTATC
GTGAGGGGTCGAGATCTAGAGGCCGTTCGAAGCGTTTCGTCAGGGTGGAG
ATGGTTCCTGGAGAGAGAATTGGATATGGAAGCAGTCAAAACGGTTGGCA
TTAGAGTTGTTAGCCTTCCTTCAGTCGGTATCAAAGATAAGAAGTTTTTC
ATCAACAAATGGATCAAAAGTAACACCACTGTCAAAGCTGAGAGAAGCCA
AAGTACCATTGAGGTTTCCATGTTGTCCTGGATGGGCTACAGTAATACTG
TGAAGGATCATTTCGTTGCATTCCGCGTTGAGAATGACTTGTCAAGGCAA
TCAATCTCTTACTACGATGGACTGCGCAATAATGGAAAACCAAGGTTGAT
AGATGTTGATGAAATTGATACCGGAACGGCGCCTTTCATTCCCTCAGCCG
CACATGCTGTTTTTCTACTTTCAAGTGGCAGCTCAACTTTGCAGTTGTAC
TTGAATGAAACTAAAATAAGCTTGTTGGCGTCTTTGCATTGCTTATGTTC
TTAA

protein sequence of Ggra5399.t1

>Ggra5399.t1 ID=Ggra5399.t1|Name=Ggra5399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=618bp
MERSVMVMKNTKNVNKRKKNKPRKKNNKCNEVKNVGDLKNVLNQFLDWTK
SRPGTGSSCALEEISKTFQTSVSPRSKRSLSPPTRPTEEKYFSSLRHLNP
LAPQVCARKKSISKKVKSRLSLEMKEKVITTKPSKSNLGCIFDWYNVWNQ
PGKKNSVRSGSANGSSVEANAASILLHLSKAPKPSHKRRSIDFNFFFLLA
NLGNLKSSSTWFHNGSWCAGRDWIFPSFRAICDEWNIGNMDKVVQVYSSL
ALKANLPRFDTALKIRSIESSYTNFEEFHKSENLAFNAVRMKCWEAIEKV
PVDELLHLSDTQLASQKMLMWSNNSCGLDCCLFQIPKAVRMLVRKCLCDQ
SFFSRGSIASIVVGRLNISDRGWKGRMFDSLNFSNWTRALSLDAYEYITK
RPLPDWLKWSPFHGDQQYLDMSNLMTLFFPAMFKKISPRPTLPFRTITRI
VRGRDLEAVRSVSSGWRWFLERELDMEAVKTVGIRVVSLPSVGIKDKKFF
INKWIKSNTTVKAERSQSTIEVSMLSWMGYSNTVKDHFVAFRVENDLSRQ
SISYYDGLRNNGKPRLIDVDEIDTGTAPFIPSAAHAVFLLSSGSSTLQLY
LNETKISLLASLHCLCS*

mRNA from alignment at tig00000099_pilon:193374..195227-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5399.t1 ID=Ggra5399.t1|Name=Ggra5399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1854bp|location=Sequence derived from alignment at tig00000099_pilon:193374..195227- (Gracilaria gracilis GNS1m male)
ATGGAAAGAAGTGTTATGGTCATGAAGAATACGAAAAACGTGAATAAAAG
AAAAAAGAACAAACCCAGGAAGAAGAACAACAAATGCAACGAAGTTAAAA
ATGTAGGTGACCTCAAGAATGTGCTTAATCAGTTTTTGGATTGGACAAAG
AGCAGACCTGGTACTGGATCGAGTTGTGCTTTAGAGGAAATTTCAAAAAC
ATTTCAAACAAGCGTGTCACCAAGATCTAAAAGAAGCCTTTCACCGCCAA
CAAGACCGACAGAAGAGAAGTACTTCTCCTCTTTGAGGCATTTGAATCCG
CTTGCACCTCAAGTTTGCGCCCGAAAGAAATCAATTTCAAAGAAGGTAAA
ATCAAGGCTATCCTTAGAGATGAAGGAAAAAGTGATTACAACTAAACCAT
CAAAGTCAAACTTGGGTTGCATTTTTGATTGGTACAATGTTTGGAATCAG
CCCGGAAAGAAGAACAGCGTCCGTTCTGGATCTGCAAATGGCAGCAGCGT
CGAAGCGAATGCAGCCTCTATTCTCCTTCACCTAAGCAAGGCTCCAAAAC
CAAGTCATAAACGTCGCTCTATTGACTTCAACTTTTTCTTCCTATTGGCA
AACTTGGGAAATCTGAAGTCGAGTTCCACATGGTTTCATAATGGGTCATG
GTGTGCCGGGCGTGATTGGATATTTCCCTCGTTTCGCGCAATCTGTGATG
AGTGGAACATTGGAAACATGGACAAGGTCGTCCAAGTGTACTCGTCACTT
GCCTTGAAAGCGAATCTTCCTAGGTTTGACACCGCCTTGAAAATTCGAAG
CATAGAGAGTTCGTACACAAATTTTGAAGAGTTCCACAAATCGGAAAACC
TTGCTTTCAATGCTGTGAGGATGAAGTGCTGGGAAGCTATCGAAAAAGTT
CCTGTAGACGAACTGCTACATCTTTCTGACACCCAACTTGCTTCACAAAA
AATGCTGATGTGGTCGAACAATTCATGTGGTCTGGACTGCTGCTTGTTTC
AGATTCCAAAAGCCGTACGCATGCTTGTCAGAAAATGTTTGTGTGACCAG
TCTTTCTTCAGCAGGGGAAGCATTGCTTCTATTGTCGTTGGTCGTTTGAA
TATCAGTGATCGGGGCTGGAAGGGGAGGATGTTTGATTCACTAAATTTTT
CAAACTGGACAAGGGCTCTAAGTTTGGACGCTTATGAGTATATCACGAAA
CGCCCACTTCCAGACTGGCTGAAATGGTCTCCATTTCATGGCGATCAACA
GTATCTGGATATGTCGAATCTGATGACTCTTTTCTTTCCGGCCATGTTCA
AAAAGATAAGTCCACGACCAACATTACCATTTCGTACTATCACCCGTATC
GTGAGGGGTCGAGATCTAGAGGCCGTTCGAAGCGTTTCGTCAGGGTGGAG
ATGGTTCCTGGAGAGAGAATTGGATATGGAAGCAGTCAAAACGGTTGGCA
TTAGAGTTGTTAGCCTTCCTTCAGTCGGTATCAAAGATAAGAAGTTTTTC
ATCAACAAATGGATCAAAAGTAACACCACTGTCAAAGCTGAGAGAAGCCA
AAGTACCATTGAGGTTTCCATGTTGTCCTGGATGGGCTACAGTAATACTG
TGAAGGATCATTTCGTTGCATTCCGCGTTGAGAATGACTTGTCAAGGCAA
TCAATCTCTTACTACGATGGACTGCGCAATAATGGAAAACCAAGGTTGAT
AGATGTTGATGAAATTGATACCGGAACGGCGCCTTTCATTCCCTCAGCCG
CACATGCTGTTTTTCTACTTTCAAGTGGCAGCTCAACTTTGCAGTTGTAC
TTGAATGAAACTAAAATAAGCTTGTTGGCGTCTTTGCATTGCTTATGTTC
TTAA

Coding sequence (CDS) from alignment at tig00000099_pilon:193374..195227-

>Ggra5399.t1 ID=Ggra5399.t1|Name=Ggra5399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1854bp|location=Sequence derived from alignment at tig00000099_pilon:193374..195227- (Gracilaria gracilis GNS1m male)
ATGGAAAGAAGTGTTATGGTCATGAAGAATACGAAAAACGTGAATAAAAG
AAAAAAGAACAAACCCAGGAAGAAGAACAACAAATGCAACGAAGTTAAAA
ATGTAGGTGACCTCAAGAATGTGCTTAATCAGTTTTTGGATTGGACAAAG
AGCAGACCTGGTACTGGATCGAGTTGTGCTTTAGAGGAAATTTCAAAAAC
ATTTCAAACAAGCGTGTCACCAAGATCTAAAAGAAGCCTTTCACCGCCAA
CAAGACCGACAGAAGAGAAGTACTTCTCCTCTTTGAGGCATTTGAATCCG
CTTGCACCTCAAGTTTGCGCCCGAAAGAAATCAATTTCAAAGAAGGTAAA
ATCAAGGCTATCCTTAGAGATGAAGGAAAAAGTGATTACAACTAAACCAT
CAAAGTCAAACTTGGGTTGCATTTTTGATTGGTACAATGTTTGGAATCAG
CCCGGAAAGAAGAACAGCGTCCGTTCTGGATCTGCAAATGGCAGCAGCGT
CGAAGCGAATGCAGCCTCTATTCTCCTTCACCTAAGCAAGGCTCCAAAAC
CAAGTCATAAACGTCGCTCTATTGACTTCAACTTTTTCTTCCTATTGGCA
AACTTGGGAAATCTGAAGTCGAGTTCCACATGGTTTCATAATGGGTCATG
GTGTGCCGGGCGTGATTGGATATTTCCCTCGTTTCGCGCAATCTGTGATG
AGTGGAACATTGGAAACATGGACAAGGTCGTCCAAGTGTACTCGTCACTT
GCCTTGAAAGCGAATCTTCCTAGGTTTGACACCGCCTTGAAAATTCGAAG
CATAGAGAGTTCGTACACAAATTTTGAAGAGTTCCACAAATCGGAAAACC
TTGCTTTCAATGCTGTGAGGATGAAGTGCTGGGAAGCTATCGAAAAAGTT
CCTGTAGACGAACTGCTACATCTTTCTGACACCCAACTTGCTTCACAAAA
AATGCTGATGTGGTCGAACAATTCATGTGGTCTGGACTGCTGCTTGTTTC
AGATTCCAAAAGCCGTACGCATGCTTGTCAGAAAATGTTTGTGTGACCAG
TCTTTCTTCAGCAGGGGAAGCATTGCTTCTATTGTCGTTGGTCGTTTGAA
TATCAGTGATCGGGGCTGGAAGGGGAGGATGTTTGATTCACTAAATTTTT
CAAACTGGACAAGGGCTCTAAGTTTGGACGCTTATGAGTATATCACGAAA
CGCCCACTTCCAGACTGGCTGAAATGGTCTCCATTTCATGGCGATCAACA
GTATCTGGATATGTCGAATCTGATGACTCTTTTCTTTCCGGCCATGTTCA
AAAAGATAAGTCCACGACCAACATTACCATTTCGTACTATCACCCGTATC
GTGAGGGGTCGAGATCTAGAGGCCGTTCGAAGCGTTTCGTCAGGGTGGAG
ATGGTTCCTGGAGAGAGAATTGGATATGGAAGCAGTCAAAACGGTTGGCA
TTAGAGTTGTTAGCCTTCCTTCAGTCGGTATCAAAGATAAGAAGTTTTTC
ATCAACAAATGGATCAAAAGTAACACCACTGTCAAAGCTGAGAGAAGCCA
AAGTACCATTGAGGTTTCCATGTTGTCCTGGATGGGCTACAGTAATACTG
TGAAGGATCATTTCGTTGCATTCCGCGTTGAGAATGACTTGTCAAGGCAA
TCAATCTCTTACTACGATGGACTGCGCAATAATGGAAAACCAAGGTTGAT
AGATGTTGATGAAATTGATACCGGAACGGCGCCTTTCATTCCCTCAGCCG
CACATGCTGTTTTTCTACTTTCAAGTGGCAGCTCAACTTTGCAGTTGTAC
TTGAATGAAACTAAAATAAGCTTGTTGGCGTCTTTGCATTGCTTATGTTC
TTAA