Ggra5397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5397.t1
Unique NameGgra5397.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:168235..168690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5397Ggra5397Gracilaria gracilis GNS1m malegenetig00000099_pilon 168235..168690 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5397.t1.start1Ggra5397.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 168235..168237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5397.t1.CDS1Ggra5397.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 168235..168690 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5397.t1.exon1Ggra5397.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 168235..168690 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5397.t1.stop1Ggra5397.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 168688..168690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5397.t1Ggra5397.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 168235..168690 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5397.t1 ID=Ggra5397.t1|Name=Ggra5397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=152bp
MFSMLNLIGLDSSTVPVPGLLLYYNDPSPLGDSALPDSVALVDDLVRFKR
EQSYPHMVFISAFGMDSLICIDGHLTREGSFLVFKIAEQESSIKRGILVF
QFKKENDTLMTLAKKPGIPSIGLILTVKKGHDPVLQQVYFNLSKEGRSSE
S*
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spliced messenger RNA

>Ggra5397.t1 ID=Ggra5397.t1|Name=Ggra5397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000099_pilon:168235..168690+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCATGCTGAACTTGATTGGGTTGGATTCATCCACTGTTCCAGT
TCCAGGTCTTCTTCTTTACTACAACGATCCGTCTCCGTTAGGTGATAGCG
CTCTGCCAGACTCAGTTGCACTGGTAGACGACCTTGTGAGATTCAAGAGA
GAACAGTCGTACCCGCATATGGTTTTCATTAGTGCGTTTGGGATGGATTC
ATTGATTTGTATCGACGGACATTTAACACGGGAAGGTTCTTTTTTGGTTT
TCAAAATCGCCGAACAGGAGTCGAGTATCAAACGTGGGATTTTGGTGTTT
CAATTCAAGAAAGAAAACGATACTTTAATGACGCTGGCGAAGAAACCTGG
GATTCCCTCCATAGGACTGATTCTCACCGTGAAAAAAGGCCATGATCCTG
TTTTACAGCAAGTGTATTTCAACCTATCGAAGGAAGGTCGAAGTTCTGAG
TCTTAG
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protein sequence of Ggra5397.t1

>Ggra5397.t1 ID=Ggra5397.t1|Name=Ggra5397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=152bp
MFSMLNLIGLDSSTVPVPGLLLYYNDPSPLGDSALPDSVALVDDLVRFKR
EQSYPHMVFISAFGMDSLICIDGHLTREGSFLVFKIAEQESSIKRGILVF
QFKKENDTLMTLAKKPGIPSIGLILTVKKGHDPVLQQVYFNLSKEGRSSE
S*
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mRNA from alignment at tig00000099_pilon:168235..168690+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5397.t1 ID=Ggra5397.t1|Name=Ggra5397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=456bp|location=Sequence derived from alignment at tig00000099_pilon:168235..168690+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCATGCTGAACTTGATTGGGTTGGATTCATCCACTGTTCCAGT
TCCAGGTCTTCTTCTTTACTACAACGATCCGTCTCCGTTAGGTGATAGCG
CTCTGCCAGACTCAGTTGCACTGGTAGACGACCTTGTGAGATTCAAGAGA
GAACAGTCGTACCCGCATATGGTTTTCATTAGTGCGTTTGGGATGGATTC
ATTGATTTGTATCGACGGACATTTAACACGGGAAGGTTCTTTTTTGGTTT
TCAAAATCGCCGAACAGGAGTCGAGTATCAAACGTGGGATTTTGGTGTTT
CAATTCAAGAAAGAAAACGATACTTTAATGACGCTGGCGAAGAAACCTGG
GATTCCCTCCATAGGACTGATTCTCACCGTGAAAAAAGGCCATGATCCTG
TTTTACAGCAAGTGTATTTCAACCTATCGAAGGAAGGTCGAAGTTCTGAG
TCTTAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:168235..168690+

>Ggra5397.t1 ID=Ggra5397.t1|Name=Ggra5397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=456bp|location=Sequence derived from alignment at tig00000099_pilon:168235..168690+ (Gracilaria gracilis GNS1m male)
ATGTTTTCCATGCTGAACTTGATTGGGTTGGATTCATCCACTGTTCCAGT
TCCAGGTCTTCTTCTTTACTACAACGATCCGTCTCCGTTAGGTGATAGCG
CTCTGCCAGACTCAGTTGCACTGGTAGACGACCTTGTGAGATTCAAGAGA
GAACAGTCGTACCCGCATATGGTTTTCATTAGTGCGTTTGGGATGGATTC
ATTGATTTGTATCGACGGACATTTAACACGGGAAGGTTCTTTTTTGGTTT
TCAAAATCGCCGAACAGGAGTCGAGTATCAAACGTGGGATTTTGGTGTTT
CAATTCAAGAAAGAAAACGATACTTTAATGACGCTGGCGAAGAAACCTGG
GATTCCCTCCATAGGACTGATTCTCACCGTGAAAAAAGGCCATGATCCTG
TTTTACAGCAAGTGTATTTCAACCTATCGAAGGAAGGTCGAAGTTCTGAG
TCTTAG
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