Ggra5389.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5389.t1
Unique NameGgra5389.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:112280..113215 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5389Ggra5389Gracilaria gracilis GNS1m malegenetig00000099_pilon 112280..113215 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5389.t1.start1Ggra5389.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 112280..112282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5389.t1.CDS1Ggra5389.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 112280..113215 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5389.t1.exon1Ggra5389.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 112280..113215 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5389.t1.stop1Ggra5389.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 113213..113215 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5389.t1Ggra5389.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 112280..113215 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5389.t1 ID=Ggra5389.t1|Name=Ggra5389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MNRCLAVQWCTARAQFAKHSDHHLFCGPPLETVQHRRTRRSFREIQEQNS
FFASNPEVYAVDEKQLLYARYRMKNPIPPWIRERGNKLHRQSSSPESLEK
EFIGDHKCIFHLSSKAAEVEGCYFKAGIPTLGKRQGFSSMIQTGDDGPEA
LKARKTDPEQCASNLEGKGKEKEECKSAKDEEKDKARSKATDKTKDIDKG
RAKFQENDDGEVDVEQMIRVCRAIIRSRAIAYCCNNTKALEWRTVTNWIS
WYVRTKLEEEMGIHQTVLMSVKSLVNAMVKFCDIAMMRSALDSLALKVVI
QGQISERFSFM*
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spliced messenger RNA

>Ggra5389.t1 ID=Ggra5389.t1|Name=Ggra5389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000099_pilon:112280..113215+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCGATGCTTAGCTGTTCAGTGGTGTACAGCTAGAGCTCAATTTGC
CAAACACTCTGATCACCACCTGTTTTGTGGACCGCCCCTTGAAACGGTTC
AGCATCGAAGAACCAGAAGAAGCTTTCGAGAAATACAGGAACAGAATTCC
TTCTTTGCGAGCAACCCGGAGGTCTATGCCGTCGATGAAAAGCAACTGCT
TTATGCAAGGTATAGAATGAAGAATCCGATTCCACCCTGGATCCGTGAGC
GAGGAAACAAGCTTCACCGACAGTCTTCTTCCCCGGAAAGCTTGGAGAAA
GAGTTCATTGGTGACCATAAGTGCATTTTTCATTTGAGCTCGAAAGCAGC
AGAAGTGGAAGGTTGCTACTTTAAAGCCGGGATACCAACTTTGGGAAAAA
GACAAGGTTTCTCCAGCATGATTCAAACTGGAGACGATGGTCCAGAGGCT
CTGAAAGCTAGAAAGACAGATCCGGAGCAGTGTGCTTCCAATCTAGAAGG
TAAGGGCAAAGAAAAGGAAGAATGTAAGAGCGCAAAGGACGAAGAAAAGG
ACAAAGCAAGGAGCAAGGCCACTGATAAGACAAAGGATATTGACAAGGGA
AGAGCCAAATTCCAAGAGAACGACGATGGGGAAGTTGATGTGGAACAAAT
GATACGAGTCTGCAGAGCAATCATTAGGTCAAGAGCAATCGCCTATTGCT
GTAATAATACCAAGGCTCTAGAATGGAGGACCGTAACGAATTGGATCAGT
TGGTATGTCCGTACGAAGCTTGAAGAAGAAATGGGAATCCACCAAACAGT
TCTTATGAGTGTGAAGTCGTTGGTGAATGCTATGGTGAAGTTCTGTGATA
TTGCGATGATGAGATCAGCATTAGATTCATTGGCTTTAAAAGTGGTTATC
CAAGGGCAGATATCTGAAAGGTTTTCATTTATGTAG
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protein sequence of Ggra5389.t1

>Ggra5389.t1 ID=Ggra5389.t1|Name=Ggra5389.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MNRCLAVQWCTARAQFAKHSDHHLFCGPPLETVQHRRTRRSFREIQEQNS
FFASNPEVYAVDEKQLLYARYRMKNPIPPWIRERGNKLHRQSSSPESLEK
EFIGDHKCIFHLSSKAAEVEGCYFKAGIPTLGKRQGFSSMIQTGDDGPEA
LKARKTDPEQCASNLEGKGKEKEECKSAKDEEKDKARSKATDKTKDIDKG
RAKFQENDDGEVDVEQMIRVCRAIIRSRAIAYCCNNTKALEWRTVTNWIS
WYVRTKLEEEMGIHQTVLMSVKSLVNAMVKFCDIAMMRSALDSLALKVVI
QGQISERFSFM*
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mRNA from alignment at tig00000099_pilon:112280..113215+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5389.t1 ID=Ggra5389.t1|Name=Ggra5389.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000099_pilon:112280..113215+ (Gracilaria gracilis GNS1m male)
ATGAATCGATGCTTAGCTGTTCAGTGGTGTACAGCTAGAGCTCAATTTGC
CAAACACTCTGATCACCACCTGTTTTGTGGACCGCCCCTTGAAACGGTTC
AGCATCGAAGAACCAGAAGAAGCTTTCGAGAAATACAGGAACAGAATTCC
TTCTTTGCGAGCAACCCGGAGGTCTATGCCGTCGATGAAAAGCAACTGCT
TTATGCAAGGTATAGAATGAAGAATCCGATTCCACCCTGGATCCGTGAGC
GAGGAAACAAGCTTCACCGACAGTCTTCTTCCCCGGAAAGCTTGGAGAAA
GAGTTCATTGGTGACCATAAGTGCATTTTTCATTTGAGCTCGAAAGCAGC
AGAAGTGGAAGGTTGCTACTTTAAAGCCGGGATACCAACTTTGGGAAAAA
GACAAGGTTTCTCCAGCATGATTCAAACTGGAGACGATGGTCCAGAGGCT
CTGAAAGCTAGAAAGACAGATCCGGAGCAGTGTGCTTCCAATCTAGAAGG
TAAGGGCAAAGAAAAGGAAGAATGTAAGAGCGCAAAGGACGAAGAAAAGG
ACAAAGCAAGGAGCAAGGCCACTGATAAGACAAAGGATATTGACAAGGGA
AGAGCCAAATTCCAAGAGAACGACGATGGGGAAGTTGATGTGGAACAAAT
GATACGAGTCTGCAGAGCAATCATTAGGTCAAGAGCAATCGCCTATTGCT
GTAATAATACCAAGGCTCTAGAATGGAGGACCGTAACGAATTGGATCAGT
TGGTATGTCCGTACGAAGCTTGAAGAAGAAATGGGAATCCACCAAACAGT
TCTTATGAGTGTGAAGTCGTTGGTGAATGCTATGGTGAAGTTCTGTGATA
TTGCGATGATGAGATCAGCATTAGATTCATTGGCTTTAAAAGTGGTTATC
CAAGGGCAGATATCTGAAAGGTTTTCATTTATGTAG
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Coding sequence (CDS) from alignment at tig00000099_pilon:112280..113215+

>Ggra5389.t1 ID=Ggra5389.t1|Name=Ggra5389.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000099_pilon:112280..113215+ (Gracilaria gracilis GNS1m male)
ATGAATCGATGCTTAGCTGTTCAGTGGTGTACAGCTAGAGCTCAATTTGC
CAAACACTCTGATCACCACCTGTTTTGTGGACCGCCCCTTGAAACGGTTC
AGCATCGAAGAACCAGAAGAAGCTTTCGAGAAATACAGGAACAGAATTCC
TTCTTTGCGAGCAACCCGGAGGTCTATGCCGTCGATGAAAAGCAACTGCT
TTATGCAAGGTATAGAATGAAGAATCCGATTCCACCCTGGATCCGTGAGC
GAGGAAACAAGCTTCACCGACAGTCTTCTTCCCCGGAAAGCTTGGAGAAA
GAGTTCATTGGTGACCATAAGTGCATTTTTCATTTGAGCTCGAAAGCAGC
AGAAGTGGAAGGTTGCTACTTTAAAGCCGGGATACCAACTTTGGGAAAAA
GACAAGGTTTCTCCAGCATGATTCAAACTGGAGACGATGGTCCAGAGGCT
CTGAAAGCTAGAAAGACAGATCCGGAGCAGTGTGCTTCCAATCTAGAAGG
TAAGGGCAAAGAAAAGGAAGAATGTAAGAGCGCAAAGGACGAAGAAAAGG
ACAAAGCAAGGAGCAAGGCCACTGATAAGACAAAGGATATTGACAAGGGA
AGAGCCAAATTCCAAGAGAACGACGATGGGGAAGTTGATGTGGAACAAAT
GATACGAGTCTGCAGAGCAATCATTAGGTCAAGAGCAATCGCCTATTGCT
GTAATAATACCAAGGCTCTAGAATGGAGGACCGTAACGAATTGGATCAGT
TGGTATGTCCGTACGAAGCTTGAAGAAGAAATGGGAATCCACCAAACAGT
TCTTATGAGTGTGAAGTCGTTGGTGAATGCTATGGTGAAGTTCTGTGATA
TTGCGATGATGAGATCAGCATTAGATTCATTGGCTTTAAAAGTGGTTATC
CAAGGGCAGATATCTGAAAGGTTTTCATTTATGTAG
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