Ggra5388.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5388.t1
Unique NameGgra5388.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:111300..112231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5388Ggra5388Gracilaria gracilis GNS1m malegenetig00000099_pilon 111300..112231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1Ggra5388.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 111300..112231 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1.start1Ggra5388.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 111300..111302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1.CDS1Ggra5388.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 111300..111597 +
Ggra5388.t1.CDS2Ggra5388.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 111699..112231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1.exon1Ggra5388.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 111300..111597 +
Ggra5388.t1.exon2Ggra5388.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 111699..112231 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1.intron1Ggra5388.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 111598..111698 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5388.t1.stop1Ggra5388.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 112229..112231 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5388.t1 ID=Ggra5388.t1|Name=Ggra5388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MKQFPVNIEKNVSDQEGNCSAMRKDPDPIRAVALVCERSNDNGLLENPAK
DLDKRISSKNMSHDDDSNRDDVESSDGYVVADVVGKKMTRTTKLRAIDYA
HCTIEATGRVDVFGRFTTSDIVSNMTVSEYAAALGLYHGHGDVISSLNEE
KISTVRLKLEDEVEGQKSARQILNLVQTLTKLGLVESGGNSQWALSGGGL
IRDFGRGMPSGVIPHRIIFSSMKAVDAYWRELEQFARCRMSRGPLHAETE
CIEDETKPFGKKSTKRCVLSLMYTFR*
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spliced messenger RNA

>Ggra5388.t1 ID=Ggra5388.t1|Name=Ggra5388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000099_pilon:111300..112231+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCAGTTTCCAGTTAATATTGAGAAGAACGTTTCAGACCAAGAGGG
AAATTGCAGTGCGATGCGGAAAGATCCTGATCCCATTCGAGCAGTCGCTC
TAGTATGTGAAAGGAGTAACGACAACGGCTTGCTAGAGAATCCAGCAAAA
GATCTTGACAAGCGCATTTCATCAAAGAACATGTCTCACGATGACGATAG
TAATCGAGACGACGTTGAAAGCTCTGATGGATATGTAGTGGCAGACGTTG
TCGGTAAAAAGATGACGCGCACAACCAAGCTGAGGGCGATAGACTACGCC
CATTGCACAATTGAGGCCACGGGTCGAGTGGATGTATTCGGGCGCTTTAC
GACTAGCGATATTGTCTCCAATATGACCGTTAGCGAGTATGCAGCTGCTT
TAGGCTTATACCATGGCCATGGCGATGTaatttcatctctgaacgaggaa
aagatttccaccgtccgccttaaacttgaagatgaagtAGAAGGCCAGAA
ATCTGCCCGGCAGATTCTCAACCTAGTGCAGACGTTAACGAAACTTGGTC
TTGTGGAGTCTGGTGGTAACTCACAATGGGCTCTTTCTGGCGGTGGTCTT
ATCAGAGATTTTGGGAGAGGCATGCCGTCCGGGGTCATACCTCATAGGAT
TATCTTTTCTAGTATGAAGGCCGTCGATGCTTATTGGAGAGAACTGGAGC
AATTTGCTAGATGTAGAATGTCCCGGGGGCCTCTTCATGCGGAAACTGAA
TGTATTGAAGATGAAACGAAGCCTTTTGGAAAGAAATCGACAAAGAGATG
CGTTTTGTCTCTGATGTATACTTTCCGATAA
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protein sequence of Ggra5388.t1

>Ggra5388.t1 ID=Ggra5388.t1|Name=Ggra5388.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MKQFPVNIEKNVSDQEGNCSAMRKDPDPIRAVALVCERSNDNGLLENPAK
DLDKRISSKNMSHDDDSNRDDVESSDGYVVADVVGKKMTRTTKLRAIDYA
HCTIEATGRVDVFGRFTTSDIVSNMTVSEYAAALGLYHGHGDVISSLNEE
KISTVRLKLEDEVEGQKSARQILNLVQTLTKLGLVESGGNSQWALSGGGL
IRDFGRGMPSGVIPHRIIFSSMKAVDAYWRELEQFARCRMSRGPLHAETE
CIEDETKPFGKKSTKRCVLSLMYTFR*
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mRNA from alignment at tig00000099_pilon:111300..112231+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5388.t1 ID=Ggra5388.t1|Name=Ggra5388.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=932bp|location=Sequence derived from alignment at tig00000099_pilon:111300..112231+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGTTTCCAGTTAATATTGAGAAGAACGTTTCAGACCAAGAGGG
AAATTGCAGTGCGATGCGGAAAGATCCTGATCCCATTCGAGCAGTCGCTC
TAGTATGTGAAAGGAGTAACGACAACGGCTTGCTAGAGAATCCAGCAAAA
GATCTTGACAAGCGCATTTCATCAAAGAACATGTCTCACGATGACGATAG
TAATCGAGACGACGTTGAAAGCTCTGATGGATATGTAGTGGCAGACGTTG
TCGGTAAAAAGATGACGCGCACAACCAAGCTGAGGGCGATAGACTACGGT
ATGTTGAAAGGCAAGATGGCAAGGGTGCGCTCGTTTCACAAAACGATGTA
CCTCATTTGCGGCGTGATCAGAACTCTGAGGTTCTTGACCAGCCTGTAGC
CCATTGCACAATTGAGGCCACGGGTCGAGTGGATGTATTCGGGCGCTTTA
CGACTAGCGATATTGTCTCCAATATGACCGTTAGCGAGTATGCAGCTGCT
TTAGGCTTATACCATGGCCATGGCGATGTaatttcatctctgaacgagga
aaagatttccaccgtccgccttaaacttgaagatgaagtAGAAGGCCAGA
AATCTGCCCGGCAGATTCTCAACCTAGTGCAGACGTTAACGAAACTTGGT
CTTGTGGAGTCTGGTGGTAACTCACAATGGGCTCTTTCTGGCGGTGGTCT
TATCAGAGATTTTGGGAGAGGCATGCCGTCCGGGGTCATACCTCATAGGA
TTATCTTTTCTAGTATGAAGGCCGTCGATGCTTATTGGAGAGAACTGGAG
CAATTTGCTAGATGTAGAATGTCCCGGGGGCCTCTTCATGCGGAAACTGA
ATGTATTGAAGATGAAACGAAGCCTTTTGGAAAGAAATCGACAAAGAGAT
GCGTTTTGTCTCTGATGTATACTTTCCGATAA
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Coding sequence (CDS) from alignment at tig00000099_pilon:111300..112231+

>Ggra5388.t1 ID=Ggra5388.t1|Name=Ggra5388.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000099_pilon:111300..112231+ (Gracilaria gracilis GNS1m male)
ATGAAGCAGTTTCCAGTTAATATTGAGAAGAACGTTTCAGACCAAGAGGG
AAATTGCAGTGCGATGCGGAAAGATCCTGATCCCATTCGAGCAGTCGCTC
TAGTATGTGAAAGGAGTAACGACAACGGCTTGCTAGAGAATCCAGCAAAA
GATCTTGACAAGCGCATTTCATCAAAGAACATGTCTCACGATGACGATAG
TAATCGAGACGACGTTGAAAGCTCTGATGGATATGTAGTGGCAGACGTTG
TCGGTAAAAAGATGACGCGCACAACCAAGCTGAGGGCGATAGACTACGCC
CATTGCACAATTGAGGCCACGGGTCGAGTGGATGTATTCGGGCGCTTTAC
GACTAGCGATATTGTCTCCAATATGACCGTTAGCGAGTATGCAGCTGCTT
TAGGCTTATACCATGGCCATGGCGATGTaatttcatctctgaacgaggaa
aagatttccaccgtccgccttaaacttgaagatgaagtAGAAGGCCAGAA
ATCTGCCCGGCAGATTCTCAACCTAGTGCAGACGTTAACGAAACTTGGTC
TTGTGGAGTCTGGTGGTAACTCACAATGGGCTCTTTCTGGCGGTGGTCTT
ATCAGAGATTTTGGGAGAGGCATGCCGTCCGGGGTCATACCTCATAGGAT
TATCTTTTCTAGTATGAAGGCCGTCGATGCTTATTGGAGAGAACTGGAGC
AATTTGCTAGATGTAGAATGTCCCGGGGGCCTCTTCATGCGGAAACTGAA
TGTATTGAAGATGAAACGAAGCCTTTTGGAAAGAAATCGACAAAGAGATG
CGTTTTGTCTCTGATGTATACTTTCCGATAA
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