Ggra5384.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5384.t1
Unique NameGgra5384.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length271
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:86718..89102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704393.1
PFAMsDAHP_synth_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Evalue6.3e-37
EggNOG OGsCOG3200@1|root,2QPP7@2759|Eukaryota
EC2.5.1.54
Description3-deoxy-7-phosphoheptulonate synthase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5384Ggra5384Gracilaria gracilis GNS1m malegenetig00000099_pilon 86718..89102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1Ggra5384.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 86718..89102 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1.stop1Ggra5384.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 86718..86720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1.CDS1Ggra5384.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 86718..86941 -
Ggra5384.t1.CDS2Ggra5384.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000099_pilon 88442..88493 -
Ggra5384.t1.CDS3Ggra5384.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000099_pilon 88566..89102 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1.exon1Ggra5384.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 86718..86941 -
Ggra5384.t1.exon2Ggra5384.t1.exon2Gracilaria gracilis GNS1m maleexontig00000099_pilon 88442..88493 -
Ggra5384.t1.exon3Ggra5384.t1.exon3Gracilaria gracilis GNS1m maleexontig00000099_pilon 88566..89102 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1.intron1Ggra5384.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000099_pilon 86942..88441 -
Ggra5384.t1.intron2Ggra5384.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000099_pilon 88494..88565 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5384.t1.start1Ggra5384.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 89100..89102 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5384.t1 ID=Ggra5384.t1|Name=Ggra5384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=271bp
MQVTAFSSPLLLPNCSSASPLLSSRLSVRTCPFSMLQEPVSLLAPPTPSP
WMPAAWRLRGALQQPVYLDAIELQAFERQLEHMPLVTPDEMRSLEHLFAD
VCRADAFVLQGGDCAEALDDSADGVKSNLPDLFKMAVVLMWGGKTHFIKI
GRMACQFGKPRSSDFEVRDGVKLSSYRGKNIKARPFTPGARTPDPHPDEN
PAFTNALRHNQVIIDLASGAILPSNIAILALPMVLTLIPVAFVAELSNLV
TLLYIIYRFAVHFAVFHQGL*
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spliced messenger RNA

>Ggra5384.t1 ID=Ggra5384.t1|Name=Ggra5384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=813bp|location=Sequence derived from alignment at tig00000099_pilon:86718..89102- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGTCACCGCCTTCTCGTCCCCGCTGTTGCTACCAAATTGCTCTTC
TGCGTCGCCGTTGCTTTCGTCGCGGCTGAGCGTGCGAACATGCCCCTTTT
CCATGTTGCAGGAGCCCGTGTCGCTGCTGGCACCGCCCACCCCGAGTCCA
TGGATGCCTGCTGCCTGGCGTTTGAGAGGCGCGCTTCAGCAGCCGGTATA
CCTCGATGCCATTGAGCTGCAAGCCTTTGAACGCCAGCTGGAGCATATGC
CGTTGGTTACGCCGGATGAGATGCGCTCTTTGGAGCATCTGTTTGCTGAT
GTCTGTCGTGCAGATGCTTTTGTGCTGCAGGGCGGCGATTGTGCGGAGGC
ACTTGATGACAGTGCGGACGGTGTCAAGTCTAATTTGCCTGATTTATTCA
AGATGGCCGTCGTGCTCATGTGGGGTGGAAAGACACATTTCATCAAGATT
GGTCGTATGGCCTGTCAGTTTGGAAAGCCTAGAAGCAGTGATTTTGAAGT
CCGTGATGGTGTCAAGTTGTCCAGTTATAGAGGCAAGAATATCAAAGCCA
GGCCGTTCACGCCGGGGGCCAGAACCCCTGATCCACATCCGGATGAGAAT
CCGGCTTTTACGAATGCCTTGCGCCACAATCAGGTGATTATTGATCTGGC
AAGTGGTGCTATACTTCCTAGTAATATTGCCATTCTTGCTCTCCCCATGG
TCCTGACTCTTATTCCCGTCGCGTTTGTAGCCGAGTTGAGTAATTTGGTC
ACTTTATTATATATCATTTACCGATTTGCTGTCCACTTTGCCGTTTTTCA
TCAAGGGCTTTGA
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protein sequence of Ggra5384.t1

>Ggra5384.t1 ID=Ggra5384.t1|Name=Ggra5384.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=271bp
MQVTAFSSPLLLPNCSSASPLLSSRLSVRTCPFSMLQEPVSLLAPPTPSP
WMPAAWRLRGALQQPVYLDAIELQAFERQLEHMPLVTPDEMRSLEHLFAD
VCRADAFVLQGGDCAEALDDSADGVKSNLPDLFKMAVVLMWGGKTHFIKI
GRMACQFGKPRSSDFEVRDGVKLSSYRGKNIKARPFTPGARTPDPHPDEN
PAFTNALRHNQVIIDLASGAILPSNIAILALPMVLTLIPVAFVAELSNLV
TLLYIIYRFAVHFAVFHQGL*
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mRNA from alignment at tig00000099_pilon:86718..89102-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5384.t1 ID=Ggra5384.t1|Name=Ggra5384.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2385bp|location=Sequence derived from alignment at tig00000099_pilon:86718..89102- (Gracilaria gracilis GNS1m male)
ATGCAAGTCACCGCCTTCTCGTCCCCGCTGTTGCTACCAAATTGCTCTTC
TGCGTCGCCGTTGCTTTCGTCGCGGCTGAGCGTGCGAACATGCCCCTTTT
CCATGTTGCAGGAGCCCGTGTCGCTGCTGGCACCGCCCACCCCGAGTCCA
TGGATGCCTGCTGCCTGGCGTTTGAGAGGCGCGCTTCAGCAGCCGGTATA
CCTCGATGCCATTGAGCTGCAAGCCTTTGAACGCCAGCTGGAGCATATGC
CGTTGGTTACGCCGGATGAGATGCGCTCTTTGGAGCATCTGTTTGCTGAT
GTCTGTCGTGCAGATGCTTTTGTGCTGCAGGGCGGCGATTGTGCGGAGGC
ACTTGATGACAGTGCGGACGGTGTCAAGTCTAATTTGCCTGATTTATTCA
AGATGGCCGTCGTGCTCATGTGGGGTGGAAAGACACATTTCATCAAGATT
GGTCGTATGGCCTGTCAGTTTGGAAAGCCTAGAAGCAGTGATTTTGAAGT
CCGTGATGGTGTCAAGTTGTCCAGTTATAGAGGCAAGGTATGTTGTTTTA
GTACACATTTGTTTTGTGCGTTCGAACCCACGCGCTAACTCTTTTTTCAT
GCTCTGTAGAATATCAAAGCCAGGCCGTTCACGCCGGGGGCCAGAACCCC
TGATCCACATCGTATGTTACGAGCGCATCACAGCAGTAGAGCTACGTCCA
ATATGGCGCACGCGCTCGCCGGTGGGGGGGTTTGCCGTTCTCATGCGCGT
CAAGGAGTGGGTTATGGACTAGTCGTTGGTCACGTCACGCGGAAGACAGT
ATATGGCCAGAGCGGAGCGTATTTCAGAAGCGCTGTCCTTCATTGATACT
TGTGGCCTGTCACGCAACTAACCCGTCATGACCAGTACCGGTGTGTACAG
CTCTCATGAGACGCTGCTTCTGCCTTATGAGCAGGCTTTGACCCGATTTG
ACTCGGAGACTGGTAACTTTTACGCTTGCAGTGGACATGATGTAGGTTGA
TGAGCGAACCAGAGGCATTGATGATGCCCATTTTGAGTTTGCTGGGGTAT
TTCGAATCATAAGTTGTGCTCTTTTTTTGTCTCCTCCCTAAAAATTCGTT
GCTGACCACGATTGCGTTTGTTTTCTGCGCGTGCAGCAATCGCTTTCAAG
GCCGGTCCTTCTATGAAGCCCGACGATTTACTTCGCCTGTACGATTGTCT
CAACCCTCATAATATCCCCGATCGTCTCATTGTCATTACCAGAATGGGTG
CCGACAACATTCTGCAAGGTCTGCCTCCGCTCATTCGTGCCATTCAGCGA
GAGGGTCGTAACGTGGTGTGGGTACCGGACAGTATGCATGGAAATACCTT
CAAGACCGATTCCGGTTACAAGAAAGGTTCCTGGAATCAAATTCATGGCT
GAGGTGCGCGGCTTTTTCACTGTGAATGCTGGAGAAGGTTCGATTGCAGG
CGGTCTGAACTTCGAGATGACCGGCAAGGAAGTTACCGGGTGGGTTGGTG
GAACAAGAAAGGCCAGGTCGGAGCATCTTCCTCAGAGGTATGAAAGTTTG
TGTGACCCGAGGTTGAATGAATCGCAATCTTCGGAAATGGCATTTGGAGT
TGACCCAATTGCCTGTAACATACGCGCCGAACCATGGATCGGCGCTTCGA
TCACCTCATCGCTCGTCCTTCAAATCTTCAGCCCTGATCGCGTCTGTCAG
TCCAGTCCCGACGTCATCTTTGCTGCTCAACAACGCCAATTACACCCATC
TCTTCTACAAGAAGACCTCAATGTGCTACATAATGCCGCCACACAAAGGC
GTCTCGTCGCGCAACGTGCACTTATGTCACTCATTTCCGCGCAACGATTA
CCTCTTTTTGAGTCCTTTCACGCTCTATCTTCGTGTACGTGTGTACAAGA
TGCGCAGCACTGCCGCGTGGAGACTTCTATGGCGTATCGTGTTAATGGCA
CTTTATATGTATATACTGCCGTCACGAATCATCCCGTGCACAACTACTTG
CCCGACTTTTGAACGTTCCTTTATTGCCGAGTCTGTCTACAGGAGGTTTC
GCACATTGAAGCTTATTCATCCGCGATGGAATGATTCCGAGTTGGAGCGT
TCTTTCACGCTTTTGAGACGTGGCGAAGGACGAGCTGAGTTTGCGAGCGT
TACGATGACAGCGGATGAGAATCCGGCTTTTACGAATGCCTTGCGCCACA
ATCAGGTGATTATTGATCTGGCAAGTGGTGCTATACTTCCTAGTAATATT
GCCATTCTTGCTCTCCCCATGGTCCTGACTCTTATTCCCGTCGCGTTTGT
AGCCGAGTTGAGTAATTTGGTCACTTTATTATATATCATTTACCGATTTG
CTGTCCACTTTGCCGTTTTTCATCAAGGGCTTTGA
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Coding sequence (CDS) from alignment at tig00000099_pilon:86718..89102-

>Ggra5384.t1 ID=Ggra5384.t1|Name=Ggra5384.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=813bp|location=Sequence derived from alignment at tig00000099_pilon:86718..89102- (Gracilaria gracilis GNS1m male)
ATGCAAGTCACCGCCTTCTCGTCCCCGCTGTTGCTACCAAATTGCTCTTC
TGCGTCGCCGTTGCTTTCGTCGCGGCTGAGCGTGCGAACATGCCCCTTTT
CCATGTTGCAGGAGCCCGTGTCGCTGCTGGCACCGCCCACCCCGAGTCCA
TGGATGCCTGCTGCCTGGCGTTTGAGAGGCGCGCTTCAGCAGCCGGTATA
CCTCGATGCCATTGAGCTGCAAGCCTTTGAACGCCAGCTGGAGCATATGC
CGTTGGTTACGCCGGATGAGATGCGCTCTTTGGAGCATCTGTTTGCTGAT
GTCTGTCGTGCAGATGCTTTTGTGCTGCAGGGCGGCGATTGTGCGGAGGC
ACTTGATGACAGTGCGGACGGTGTCAAGTCTAATTTGCCTGATTTATTCA
AGATGGCCGTCGTGCTCATGTGGGGTGGAAAGACACATTTCATCAAGATT
GGTCGTATGGCCTGTCAGTTTGGAAAGCCTAGAAGCAGTGATTTTGAAGT
CCGTGATGGTGTCAAGTTGTCCAGTTATAGAGGCAAGAATATCAAAGCCA
GGCCGTTCACGCCGGGGGCCAGAACCCCTGATCCACATCCGGATGAGAAT
CCGGCTTTTACGAATGCCTTGCGCCACAATCAGGTGATTATTGATCTGGC
AAGTGGTGCTATACTTCCTAGTAATATTGCCATTCTTGCTCTCCCCATGG
TCCTGACTCTTATTCCCGTCGCGTTTGTAGCCGAGTTGAGTAATTTGGTC
ACTTTATTATATATCATTTACCGATTTGCTGTCCACTTTGCCGTTTTTCA
TCAAGGGCTTTGA
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