Ggra5382.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5382.t1
Unique NameGgra5382.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length587
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000099_piloncontigtig00000099_pilon:70679..72439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5382Ggra5382Gracilaria gracilis GNS1m malegenetig00000099_pilon 70679..72439 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5382.t1.stop1Ggra5382.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000099_pilon 70679..70681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5382.t1.CDS1Ggra5382.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000099_pilon 70679..72439 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5382.t1.exon1Ggra5382.t1.exon1Gracilaria gracilis GNS1m maleexontig00000099_pilon 70679..72439 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5382.t1.start1Ggra5382.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000099_pilon 72437..72439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5382.t1Ggra5382.t1Gracilaria gracilis GNS1m malepolypeptidetig00000099_pilon 70679..72439 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5382.t1 ID=Ggra5382.t1|Name=Ggra5382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=587bp
MAESRTSGPEDSHNVTSERDRKLRYSFSSHEQSPSFGGIRGTKRLKAARN
HNRISKRFKVGQGSRSKNPALDNSLGVFSSDEQSDSHHLTSEKDRKPRNS
FSSDEQFSSLGGIRGTTRLKAARNHNRISKRFKVGQRSWSKNSSMSVKRL
WEQNLGRICWKDPDFFTTRDSRLSRNSVTWKEGKVYHGVNATRQNCFAFD
VIHNVLFGAKERFGFEDGEGFRRLSNTISQFLRLCIARRLCDKHDAYKEN
VLFVCVADLEVVERFISFQVECCSHWTSMLKARHLKKVCMIAPGFITDHG
RTADISKVSQYLDVIIRANGKSTGYLGQRTKLVRFYGSQFIKECFRSSIE
KLKDMMKRHSSRNEQRTAGDLEKYVSSWSPAFLTFITVCSAGQNPLAVSN
IEVQCPKMLETVLVRASRTGYVRLPTLRGKRTQVLGHPVVALPALSVRFL
RFHVNVVHPMIMTITGRKTSTGSFRTLIVHKWTGERMKSSAIAYEFRKFT
SNIYTSASPVNLRDMRASVMKCFQSGFRAKLVMEGQSEERFLDLVARHLN
TTALQVKKCVGVLGSAEYNSTAKELMRPLGAWKSAC*
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spliced messenger RNA

>Ggra5382.t1 ID=Ggra5382.t1|Name=Ggra5382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000099_pilon:70679..72439- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAGTCCAGGACTTCTGGGCCGGAGGATTCTCACAACGTCACTTC
GGAAAGAGATAGAAAGCTGCGTTACTCGTTCTCTTCGCATGAACAATCCC
CGTCGTTTGGCGGCATTCGTGGAACAAAGCGTCTGAAGGCCGCACGCAAT
CATAACCGCATCTCGAAGCGCTTCAAGGTGGGTCAAGGATCACGGTCCAA
GAACCCTGCTCTCGATAATTCTCTCGGGGTTTTTTCATCGGATGAGCAAT
CGGATTCCCACCACCTCACCTCAGAAAAGGATAGGAAGCCCCGAAACTCG
TTCTCTTCTGATGAGCAATTCTCGTCGTTAGGCGGCATTCGTGGAACTAC
ACGTCTGAAGGCGGCACGCAATCATAACCGCATCTCTAAGCGCTTCAAGG
TGGGTCAGAGATCATGGTCTAAGAATTCTTCAATGTCAGTTAAGCGATTG
TGGGAGCAAAATCTTGGGAGGATATGTTGGAAGGATCCAGACTTCTTTAC
AACACGAGATTCAAGGCTCTCGCGGAACTCCGTTACGTGGAAGGAGGGGA
AGGTCTATCATGGCGTGAATGCAACGAGACAGAACTGCTTCGCATTTGAC
GTGATTCACAATGTTCTCTTCGGAGCCAAGGAACGATTTGGATTCGAGGA
TGGAGAAGGTTTTCGGCGACTATCAAACACGATATCCCAGTTTTTGAGAC
TCTGCATAGCCCGAAGACTGTGCGACAAACACGATGCATACAAAGAGAAT
GTGCTCTTTGTTTGCGTCGCTGATCTAGAGGTGGTGGAACGTTTCATTAG
TTTTCAAGTAGAGTGTTGTTCCCATTGGACATCAATGCTCAAGGCACGGC
ACCTAAAAAAGGTCTGCATGATAGCACCTGGATTCATAACCGACCATGGC
AGGACAGCAGATATATCGAAAGTTTCCCAGTACTTGGATGTCATCATCAG
AGCAAACGGGAAGAGCACTGGGTATCTCGGTCAAAGGACAAAGCTGGTTC
GTTTTTACGGTTCACAATTCATCAAGGAATGTTTCCGATCCAGTATCGAG
AAACTAAAAGACATGATGAAGCGCCATTCTTCAAGGAACGAACAAAGGAC
TGCTGGCGACCTAGAAAAGTATGTTTCCAGTTGGTCGCCAGCATTTCTTA
CTTTCATTACAGTTTGCTCTGCTGGGCAGAATCCTTTGGCGGTTTCAAAC
ATTGAAGTACAGTGTCCGAAGATGTTGGAAACGGTTTTGGTGCGTGCATC
AAGAACTGGATATGTGCGACTCCCAACCTTGCGTGGCAAGAGAACCCAGG
TCCTGGGTCATCCGGTGGTAGCGCTTCCTGCCCTTTCAGTCAGATTTCTT
CGCTTTCATGTCAATGTTGTCCACCCGATGATCATGACTATCACAGGGAG
GAAGACATCTACCGGATCTTTCAGAACTTTAATAGTGCATAAGTGGACTG
GTGAGCGAATGAAATCTTCTGCGATTGCGTACGAATTTAGGAAGTTTACT
TCTAATATATACACGTCTGCGTCTCCTGTCAATTTGAGAGATATGAGGGC
TAGTGTTATGAAGTGCTTTCAATCAGGGTTTCGTGCGAAGTTGGTGATGG
AAGGGCAATCGGAAGAAAGATTCCTCGATCTAGTAGCTCGTCATCTGAAC
ACTACTGCGTTGCAAGTGAAGAAGTGCGTTGGTGTACTGGGTTCTGCGGA
GTACAATAGTACAGCTAAAGAGCTGATGAGACCTTTGGGGGCCTGGAAAT
CAGCTTGCTGA
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protein sequence of Ggra5382.t1

>Ggra5382.t1 ID=Ggra5382.t1|Name=Ggra5382.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=587bp
MAESRTSGPEDSHNVTSERDRKLRYSFSSHEQSPSFGGIRGTKRLKAARN
HNRISKRFKVGQGSRSKNPALDNSLGVFSSDEQSDSHHLTSEKDRKPRNS
FSSDEQFSSLGGIRGTTRLKAARNHNRISKRFKVGQRSWSKNSSMSVKRL
WEQNLGRICWKDPDFFTTRDSRLSRNSVTWKEGKVYHGVNATRQNCFAFD
VIHNVLFGAKERFGFEDGEGFRRLSNTISQFLRLCIARRLCDKHDAYKEN
VLFVCVADLEVVERFISFQVECCSHWTSMLKARHLKKVCMIAPGFITDHG
RTADISKVSQYLDVIIRANGKSTGYLGQRTKLVRFYGSQFIKECFRSSIE
KLKDMMKRHSSRNEQRTAGDLEKYVSSWSPAFLTFITVCSAGQNPLAVSN
IEVQCPKMLETVLVRASRTGYVRLPTLRGKRTQVLGHPVVALPALSVRFL
RFHVNVVHPMIMTITGRKTSTGSFRTLIVHKWTGERMKSSAIAYEFRKFT
SNIYTSASPVNLRDMRASVMKCFQSGFRAKLVMEGQSEERFLDLVARHLN
TTALQVKKCVGVLGSAEYNSTAKELMRPLGAWKSAC*
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mRNA from alignment at tig00000099_pilon:70679..72439-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5382.t1 ID=Ggra5382.t1|Name=Ggra5382.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1761bp|location=Sequence derived from alignment at tig00000099_pilon:70679..72439- (Gracilaria gracilis GNS1m male)
ATGGCAGAGTCCAGGACTTCTGGGCCGGAGGATTCTCACAACGTCACTTC
GGAAAGAGATAGAAAGCTGCGTTACTCGTTCTCTTCGCATGAACAATCCC
CGTCGTTTGGCGGCATTCGTGGAACAAAGCGTCTGAAGGCCGCACGCAAT
CATAACCGCATCTCGAAGCGCTTCAAGGTGGGTCAAGGATCACGGTCCAA
GAACCCTGCTCTCGATAATTCTCTCGGGGTTTTTTCATCGGATGAGCAAT
CGGATTCCCACCACCTCACCTCAGAAAAGGATAGGAAGCCCCGAAACTCG
TTCTCTTCTGATGAGCAATTCTCGTCGTTAGGCGGCATTCGTGGAACTAC
ACGTCTGAAGGCGGCACGCAATCATAACCGCATCTCTAAGCGCTTCAAGG
TGGGTCAGAGATCATGGTCTAAGAATTCTTCAATGTCAGTTAAGCGATTG
TGGGAGCAAAATCTTGGGAGGATATGTTGGAAGGATCCAGACTTCTTTAC
AACACGAGATTCAAGGCTCTCGCGGAACTCCGTTACGTGGAAGGAGGGGA
AGGTCTATCATGGCGTGAATGCAACGAGACAGAACTGCTTCGCATTTGAC
GTGATTCACAATGTTCTCTTCGGAGCCAAGGAACGATTTGGATTCGAGGA
TGGAGAAGGTTTTCGGCGACTATCAAACACGATATCCCAGTTTTTGAGAC
TCTGCATAGCCCGAAGACTGTGCGACAAACACGATGCATACAAAGAGAAT
GTGCTCTTTGTTTGCGTCGCTGATCTAGAGGTGGTGGAACGTTTCATTAG
TTTTCAAGTAGAGTGTTGTTCCCATTGGACATCAATGCTCAAGGCACGGC
ACCTAAAAAAGGTCTGCATGATAGCACCTGGATTCATAACCGACCATGGC
AGGACAGCAGATATATCGAAAGTTTCCCAGTACTTGGATGTCATCATCAG
AGCAAACGGGAAGAGCACTGGGTATCTCGGTCAAAGGACAAAGCTGGTTC
GTTTTTACGGTTCACAATTCATCAAGGAATGTTTCCGATCCAGTATCGAG
AAACTAAAAGACATGATGAAGCGCCATTCTTCAAGGAACGAACAAAGGAC
TGCTGGCGACCTAGAAAAGTATGTTTCCAGTTGGTCGCCAGCATTTCTTA
CTTTCATTACAGTTTGCTCTGCTGGGCAGAATCCTTTGGCGGTTTCAAAC
ATTGAAGTACAGTGTCCGAAGATGTTGGAAACGGTTTTGGTGCGTGCATC
AAGAACTGGATATGTGCGACTCCCAACCTTGCGTGGCAAGAGAACCCAGG
TCCTGGGTCATCCGGTGGTAGCGCTTCCTGCCCTTTCAGTCAGATTTCTT
CGCTTTCATGTCAATGTTGTCCACCCGATGATCATGACTATCACAGGGAG
GAAGACATCTACCGGATCTTTCAGAACTTTAATAGTGCATAAGTGGACTG
GTGAGCGAATGAAATCTTCTGCGATTGCGTACGAATTTAGGAAGTTTACT
TCTAATATATACACGTCTGCGTCTCCTGTCAATTTGAGAGATATGAGGGC
TAGTGTTATGAAGTGCTTTCAATCAGGGTTTCGTGCGAAGTTGGTGATGG
AAGGGCAATCGGAAGAAAGATTCCTCGATCTAGTAGCTCGTCATCTGAAC
ACTACTGCGTTGCAAGTGAAGAAGTGCGTTGGTGTACTGGGTTCTGCGGA
GTACAATAGTACAGCTAAAGAGCTGATGAGACCTTTGGGGGCCTGGAAAT
CAGCTTGCTGA
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Coding sequence (CDS) from alignment at tig00000099_pilon:70679..72439-

>Ggra5382.t1 ID=Ggra5382.t1|Name=Ggra5382.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1761bp|location=Sequence derived from alignment at tig00000099_pilon:70679..72439- (Gracilaria gracilis GNS1m male)
ATGGCAGAGTCCAGGACTTCTGGGCCGGAGGATTCTCACAACGTCACTTC
GGAAAGAGATAGAAAGCTGCGTTACTCGTTCTCTTCGCATGAACAATCCC
CGTCGTTTGGCGGCATTCGTGGAACAAAGCGTCTGAAGGCCGCACGCAAT
CATAACCGCATCTCGAAGCGCTTCAAGGTGGGTCAAGGATCACGGTCCAA
GAACCCTGCTCTCGATAATTCTCTCGGGGTTTTTTCATCGGATGAGCAAT
CGGATTCCCACCACCTCACCTCAGAAAAGGATAGGAAGCCCCGAAACTCG
TTCTCTTCTGATGAGCAATTCTCGTCGTTAGGCGGCATTCGTGGAACTAC
ACGTCTGAAGGCGGCACGCAATCATAACCGCATCTCTAAGCGCTTCAAGG
TGGGTCAGAGATCATGGTCTAAGAATTCTTCAATGTCAGTTAAGCGATTG
TGGGAGCAAAATCTTGGGAGGATATGTTGGAAGGATCCAGACTTCTTTAC
AACACGAGATTCAAGGCTCTCGCGGAACTCCGTTACGTGGAAGGAGGGGA
AGGTCTATCATGGCGTGAATGCAACGAGACAGAACTGCTTCGCATTTGAC
GTGATTCACAATGTTCTCTTCGGAGCCAAGGAACGATTTGGATTCGAGGA
TGGAGAAGGTTTTCGGCGACTATCAAACACGATATCCCAGTTTTTGAGAC
TCTGCATAGCCCGAAGACTGTGCGACAAACACGATGCATACAAAGAGAAT
GTGCTCTTTGTTTGCGTCGCTGATCTAGAGGTGGTGGAACGTTTCATTAG
TTTTCAAGTAGAGTGTTGTTCCCATTGGACATCAATGCTCAAGGCACGGC
ACCTAAAAAAGGTCTGCATGATAGCACCTGGATTCATAACCGACCATGGC
AGGACAGCAGATATATCGAAAGTTTCCCAGTACTTGGATGTCATCATCAG
AGCAAACGGGAAGAGCACTGGGTATCTCGGTCAAAGGACAAAGCTGGTTC
GTTTTTACGGTTCACAATTCATCAAGGAATGTTTCCGATCCAGTATCGAG
AAACTAAAAGACATGATGAAGCGCCATTCTTCAAGGAACGAACAAAGGAC
TGCTGGCGACCTAGAAAAGTATGTTTCCAGTTGGTCGCCAGCATTTCTTA
CTTTCATTACAGTTTGCTCTGCTGGGCAGAATCCTTTGGCGGTTTCAAAC
ATTGAAGTACAGTGTCCGAAGATGTTGGAAACGGTTTTGGTGCGTGCATC
AAGAACTGGATATGTGCGACTCCCAACCTTGCGTGGCAAGAGAACCCAGG
TCCTGGGTCATCCGGTGGTAGCGCTTCCTGCCCTTTCAGTCAGATTTCTT
CGCTTTCATGTCAATGTTGTCCACCCGATGATCATGACTATCACAGGGAG
GAAGACATCTACCGGATCTTTCAGAACTTTAATAGTGCATAAGTGGACTG
GTGAGCGAATGAAATCTTCTGCGATTGCGTACGAATTTAGGAAGTTTACT
TCTAATATATACACGTCTGCGTCTCCTGTCAATTTGAGAGATATGAGGGC
TAGTGTTATGAAGTGCTTTCAATCAGGGTTTCGTGCGAAGTTGGTGATGG
AAGGGCAATCGGAAGAAAGATTCCTCGATCTAGTAGCTCGTCATCTGAAC
ACTACTGCGTTGCAAGTGAAGAAGTGCGTTGGTGTACTGGGTTCTGCGGA
GTACAATAGTACAGCTAAAGAGCTGATGAGACCTTTGGGGGCCTGGAAAT
CAGCTTGCTGA
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