Ggra5357.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5357.t1
Unique NameGgra5357.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:270744..271877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707798.1
PFAMsPeptidase_M24
Max annot lvl2759|Eukaryota
KEGG koko:K01265
Evalue4.6e-143
EggNOG OGsCOG0024@1|root,KOG2738@2759|Eukaryota
EC3.4.11.18
Descriptionmetalloexopeptidase activity
COG categoryE
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5357Ggra5357Gracilaria gracilis GNS1m malegenetig00000172_pilon 270744..271877 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5357.t1.stop1Ggra5357.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 270744..270746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5357.t1.CDS1Ggra5357.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 270744..271877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5357.t1.exon1Ggra5357.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 270744..271877 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5357.t1.start1Ggra5357.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 271875..271877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5357.t1Ggra5357.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 270744..271877 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5357.t1 ID=Ggra5357.t1|Name=Ggra5357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp
MGLGGVSPAFASSIPVKNGASRLLSPPSCCPLNASSRDLLRRRVTTSRRP
GSAPTMKKQKPNARAARGFGVGQISRFKYTGSLRPGTLSETRLVPEAIPR
PDYWKDGLPKAKQPRFPWEIQTLSEPQIEAMRVSCRMAREILDIAGQMVS
PGVLTDHIDAVVHEETIKRGAYPSPLNYNSFPKSCCTSINEVVCHGIPDT
TALADGDIVNIDVTVYYNGFHGDCSETFLVGEVHDNARKLVQVTHECMEK
AIQICNPGLAVKKLGGVIEEHARRNGFSVVRNFCGHGVNSVFHTTPNVMH
FKNNEPAGILKPGVTFTIEPMINEGTHRNIIWPDDWTATTLDGKRSAQFE
HTLLITESGVERLTQKLDSSPKYFWEQ*
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spliced messenger RNA

>Ggra5357.t1 ID=Ggra5357.t1|Name=Ggra5357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000172_pilon:270744..271877- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTCGGCGGCGTGAGCCCCGCCTTCGCGTCGTCCATCCCTGTCAA
GAACGGCGCCTCGCGTTTACTGTCGCCGCCGTCATGCTGCCCGCTCAATG
CAAGCAGCCGCGACCTACTCCGTCGTCGCGTCACCACGTCGCGCCGCCCG
GGCTCGGCGCCCACCATGAAGAAGCAGAAGCCCAACGCGCGCGCGGCCAG
GGGCTTTGGCGTGGGACAGATCTCGCGCTTCAAGTACACGGGCAGCCTAC
GGCCGGGCACGCTGTCCGAGACGCGGCTTGTGCCTGAAGCCATTCCCCGC
CCGGACTACTGGAAGGACGGCTTGCCCAAGGCGAAGCAGCCGCGCTTCCC
GTGGGAGATTCAAACCCTTTCCGAGCCGCAGATTGAGGCCATGCGCGTGT
CGTGTCGTATGGCTCGTGAGATTCTCGATATTGCCGGACAGATGGTCAGC
CCTGGTGTGCTCACCGACCACATTGACGCCGTTGTGCACGAGGAGACTAT
CAAACGAGGCGCCTACCCTTCCCCTCTTAACTACAACAGCTTTCCAAAGT
CGTGTTGCACCTCCATCAACGAGGTGGTGTGTCACGGCATTCCTGACACA
ACTGCGCTGGCCGACGGAGATATTGTCAACATTGATGTAACTGTGTACTA
CAACGGATTTCACGGCGACTGTTCGGAGACCTTTCTTGTGGGAGAGGTGC
ATGACAACGCACGAAAGCTTGTGCAAGTCACGCACGAATGCATGGAGAAG
GCTATCCAAATTTGCAACCCAGGCTTGGCCGTGAAGAAGCTCGGCGGCGT
GATTGAAGAGCATGCGCGACGGAATGGCTTCAGTGTGGTGCGCAATTTCT
GCGGCCACGGCGTCAACTCGGTGTTTCACACTACACCCAATGTGATGCAC
TTCAAGAACAATGAGCCGGCGGGTATTCTCAAACCGGGCGTCACCTTTAC
AATTGAGCCTATGATTAACGAAGGCACACATCGCAACATCATCTGGCCAG
ATGACTGGACCGCCACAACCCTAGATGGAAAGCGCAGCGCGCAGTTTGAG
CATACCCTGCTCATCACGGAGAGCGGCGTAGAGCGCTTGACGCAAAAACT
GGACTCGAGTCCAAAGTACTTTTGGGAACAATAG
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protein sequence of Ggra5357.t1

>Ggra5357.t1 ID=Ggra5357.t1|Name=Ggra5357.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=378bp
MGLGGVSPAFASSIPVKNGASRLLSPPSCCPLNASSRDLLRRRVTTSRRP
GSAPTMKKQKPNARAARGFGVGQISRFKYTGSLRPGTLSETRLVPEAIPR
PDYWKDGLPKAKQPRFPWEIQTLSEPQIEAMRVSCRMAREILDIAGQMVS
PGVLTDHIDAVVHEETIKRGAYPSPLNYNSFPKSCCTSINEVVCHGIPDT
TALADGDIVNIDVTVYYNGFHGDCSETFLVGEVHDNARKLVQVTHECMEK
AIQICNPGLAVKKLGGVIEEHARRNGFSVVRNFCGHGVNSVFHTTPNVMH
FKNNEPAGILKPGVTFTIEPMINEGTHRNIIWPDDWTATTLDGKRSAQFE
HTLLITESGVERLTQKLDSSPKYFWEQ*
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mRNA from alignment at tig00000172_pilon:270744..271877-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5357.t1 ID=Ggra5357.t1|Name=Ggra5357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00000172_pilon:270744..271877- (Gracilaria gracilis GNS1m male)
ATGGGTCTCGGCGGCGTGAGCCCCGCCTTCGCGTCGTCCATCCCTGTCAA
GAACGGCGCCTCGCGTTTACTGTCGCCGCCGTCATGCTGCCCGCTCAATG
CAAGCAGCCGCGACCTACTCCGTCGTCGCGTCACCACGTCGCGCCGCCCG
GGCTCGGCGCCCACCATGAAGAAGCAGAAGCCCAACGCGCGCGCGGCCAG
GGGCTTTGGCGTGGGACAGATCTCGCGCTTCAAGTACACGGGCAGCCTAC
GGCCGGGCACGCTGTCCGAGACGCGGCTTGTGCCTGAAGCCATTCCCCGC
CCGGACTACTGGAAGGACGGCTTGCCCAAGGCGAAGCAGCCGCGCTTCCC
GTGGGAGATTCAAACCCTTTCCGAGCCGCAGATTGAGGCCATGCGCGTGT
CGTGTCGTATGGCTCGTGAGATTCTCGATATTGCCGGACAGATGGTCAGC
CCTGGTGTGCTCACCGACCACATTGACGCCGTTGTGCACGAGGAGACTAT
CAAACGAGGCGCCTACCCTTCCCCTCTTAACTACAACAGCTTTCCAAAGT
CGTGTTGCACCTCCATCAACGAGGTGGTGTGTCACGGCATTCCTGACACA
ACTGCGCTGGCCGACGGAGATATTGTCAACATTGATGTAACTGTGTACTA
CAACGGATTTCACGGCGACTGTTCGGAGACCTTTCTTGTGGGAGAGGTGC
ATGACAACGCACGAAAGCTTGTGCAAGTCACGCACGAATGCATGGAGAAG
GCTATCCAAATTTGCAACCCAGGCTTGGCCGTGAAGAAGCTCGGCGGCGT
GATTGAAGAGCATGCGCGACGGAATGGCTTCAGTGTGGTGCGCAATTTCT
GCGGCCACGGCGTCAACTCGGTGTTTCACACTACACCCAATGTGATGCAC
TTCAAGAACAATGAGCCGGCGGGTATTCTCAAACCGGGCGTCACCTTTAC
AATTGAGCCTATGATTAACGAAGGCACACATCGCAACATCATCTGGCCAG
ATGACTGGACCGCCACAACCCTAGATGGAAAGCGCAGCGCGCAGTTTGAG
CATACCCTGCTCATCACGGAGAGCGGCGTAGAGCGCTTGACGCAAAAACT
GGACTCGAGTCCAAAGTACTTTTGGGAACAATAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:270744..271877-

>Ggra5357.t1 ID=Ggra5357.t1|Name=Ggra5357.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00000172_pilon:270744..271877- (Gracilaria gracilis GNS1m male)
ATGGGTCTCGGCGGCGTGAGCCCCGCCTTCGCGTCGTCCATCCCTGTCAA
GAACGGCGCCTCGCGTTTACTGTCGCCGCCGTCATGCTGCCCGCTCAATG
CAAGCAGCCGCGACCTACTCCGTCGTCGCGTCACCACGTCGCGCCGCCCG
GGCTCGGCGCCCACCATGAAGAAGCAGAAGCCCAACGCGCGCGCGGCCAG
GGGCTTTGGCGTGGGACAGATCTCGCGCTTCAAGTACACGGGCAGCCTAC
GGCCGGGCACGCTGTCCGAGACGCGGCTTGTGCCTGAAGCCATTCCCCGC
CCGGACTACTGGAAGGACGGCTTGCCCAAGGCGAAGCAGCCGCGCTTCCC
GTGGGAGATTCAAACCCTTTCCGAGCCGCAGATTGAGGCCATGCGCGTGT
CGTGTCGTATGGCTCGTGAGATTCTCGATATTGCCGGACAGATGGTCAGC
CCTGGTGTGCTCACCGACCACATTGACGCCGTTGTGCACGAGGAGACTAT
CAAACGAGGCGCCTACCCTTCCCCTCTTAACTACAACAGCTTTCCAAAGT
CGTGTTGCACCTCCATCAACGAGGTGGTGTGTCACGGCATTCCTGACACA
ACTGCGCTGGCCGACGGAGATATTGTCAACATTGATGTAACTGTGTACTA
CAACGGATTTCACGGCGACTGTTCGGAGACCTTTCTTGTGGGAGAGGTGC
ATGACAACGCACGAAAGCTTGTGCAAGTCACGCACGAATGCATGGAGAAG
GCTATCCAAATTTGCAACCCAGGCTTGGCCGTGAAGAAGCTCGGCGGCGT
GATTGAAGAGCATGCGCGACGGAATGGCTTCAGTGTGGTGCGCAATTTCT
GCGGCCACGGCGTCAACTCGGTGTTTCACACTACACCCAATGTGATGCAC
TTCAAGAACAATGAGCCGGCGGGTATTCTCAAACCGGGCGTCACCTTTAC
AATTGAGCCTATGATTAACGAAGGCACACATCGCAACATCATCTGGCCAG
ATGACTGGACCGCCACAACCCTAGATGGAAAGCGCAGCGCGCAGTTTGAG
CATACCCTGCTCATCACGGAGAGCGGCGTAGAGCGCTTGACGCAAAAACT
GGACTCGAGTCCAAAGTACTTTTGGGAACAATAG
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