Ggra5352.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5352.t1
Unique Name	Ggra5352.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	532

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:245778..247373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5352	Ggra5352	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 245778..247373 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5352.t1.start1	Ggra5352.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 245778..245780 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5352.t1.CDS1	Ggra5352.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 245778..247373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5352.t1.exon1	Ggra5352.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 245778..247373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5352.t1.stop1	Ggra5352.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 247371..247373 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5352.t1	Ggra5352.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 245778..247373 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:245778..247373+
coding sequence from alignment at tig00000172_pilon:245778..247373+

mRNA sequence

>Ggra5352.t1 ID=Ggra5352.t1|Name=Ggra5352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=532bp
MSQRALASPVTVASAAFSPSVSVVMSHAPPEDDASKDAAFDPRPPPLLPP
HSVMHSGFPPQLHLSHQLPQTLPNLPPPHPQPPQPPPQPPPQQLSYSTPP
PDPRRDHLNYDLFHDINLPLVQPTAQPAPSAFALDPSAAAAAAAAAAAAN
PSVFPRPKPTDSSAAAAAAAAAAAAAAAAQPYDRLRPPEQPVQPGAPATY
AATALGIGPSAGAISKRASRADLFDTTSSPSAPSPSRPLVAQSNLERRKA
HRAYTQKSRNKVNTRFDALLDALPTPPPRLNPRSKAEILEYATETVIRLV
AQNNKLELSLALSSSPQLQSWLHNQTQAARTLREVCQPVMRLFTIGLEWK
GAEAWAVDSRLPTQHASLAQAWTFVPPPSGRRPSREDESRMAELATFLDA
AKSSCFATSSNEAVSLVYRRGKPAWLSCEYRQYEGFDDGDFSAERTRMAA
SYGVTDVLYLPLILYNHVQIVVAFYNMRSRSSRQNAELQPQIDPKSSLRV
AQETIAIIGRRFAQLPAVGDFSGGNYGLDQF*

spliced messenger RNA

>Ggra5352.t1 ID=Ggra5352.t1|Name=Ggra5352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000172_pilon:245778..247373+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAGCGCGCCCTCGCGTCGCCCGTCACCGTCGCGTCCGCCGCGTT
CTCGCCGTCCGTCTCCGTCGTCATGTCCCACGCGCCGCCCGAAGACGACG
CGTCCAAGGACGCTGCGTTCGATCCACGCCCGCCGCCTCTTCTCCCCCCG
CACTCCGTCATGCACTCCGGCTTCccaccgcagctgcatctctcgcacca
actgccgcagacgctgcctaacttaccgccgccgcacccacagccgccac
agccgccaccacagccaccgccgcagcagcTCTCCTACTCCACGCCCCCG
CCCGACCCCCGCCGCGACCACCTCAACTACGACCTCTTCCACGACATTAA
CCTCCCCCTCGTGCAACCCACCGCCCAACCAGCGCCCTCCGCATTCGCCC
TCGACCCATCAgcagcggcggccgccgccgccgccgccgccgctgccaac
ccatccgtcttccctcgccccaagcccaccgactcctccgcggccgcagc
cgccgccgcggcagccgctgcagccgcggccgccgcgcagccATACGACC
GCCTGCGCCCGCCCGAACAACCCGTGCAGCCAGGCGCGCCCGCCACATAC
GCCGCCACCGCGCTGGGAATCGGCCCGTCGGCGGGCGCCATTTCCAAGCG
AGCCAGCCGCGCCGATCTGTTCGACACCACTTCGTCTCCGTCCGCGCCGT
CGCCGTCGCGCCCGCTCGTGGCGCAATCCAACCTGGAGCGGCGAAAGGCG
CACCGCGCCTACACGCAAAAGTCGCGCAACAAAGTCAACACGCGCTTCGA
CGCGCTGTTGGACGCGTTACCCACGCCGCCGCCGCGTCTCAACCCGCGCT
CCAAGGCGGAGATTCTGGAGTACGCCACCGAGACGGTCATTCGCCTCGTG
GCGCAGAACAACAAGCTGGAGCTGAGTCTGGCGTTGTCCAGCTCGCCGCA
GCTGCAGTCATGGCTGCACAACCAGACGCAGGCGGCGCGCACGCTGCGCG
AGGTGTGCCAACCGGTGATGCGGCTGTTCACCATCGGGCTGGAATGGAAG
GGCGCGGAAGCGTGGGCCGTAGACTCACGGTTACCCACGCAACACGCGTC
GTTGGCACAGGCGTGGACGTTTGTGCCGCCGCCGTCCGGCAGAAGACCTT
CGCGGGAAGACGAGTCGCGAATGGCAGAGCTGGCGACGTTTCTAGACGCT
GCAAAGAGCTCGTGCTTCGCGACGTCGTCGAACGAGGCAGTGTCGCTGGT
GTACCGGCGCGGAAAGCCGGCATGGTTGAGTTGCGAATACCGACAGTACG
AAGGTTTTGACGATGGGGACTTTTCAGCGGAGCGCACGCGAATGGCAGCC
AGTTATGGGGTGACGGATGTGTTGTACCTGCCGTTAATTCTTTACAACCA
CGTGCAGATTGTGGTGGCGTTCTACAACATGCGCTCACGGTCGTCGCGAC
AAAACGCAGAGCTGCAGCCGCAGATCGATCCAAAGTCGTCGCTGCGGGTG
GCGCAGGAGACGATTGCAATCATTGGCAGACGGTTTGCACAGCTGCCGGC
TGTGGGAGACTTTTCGGGCGGAAACTATGGTTTAGATCAGTTCTGA

protein sequence of Ggra5352.t1

>Ggra5352.t1 ID=Ggra5352.t1|Name=Ggra5352.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=532bp
MSQRALASPVTVASAAFSPSVSVVMSHAPPEDDASKDAAFDPRPPPLLPP
HSVMHSGFPPQLHLSHQLPQTLPNLPPPHPQPPQPPPQPPPQQLSYSTPP
PDPRRDHLNYDLFHDINLPLVQPTAQPAPSAFALDPSAAAAAAAAAAAAN
PSVFPRPKPTDSSAAAAAAAAAAAAAAAAQPYDRLRPPEQPVQPGAPATY
AATALGIGPSAGAISKRASRADLFDTTSSPSAPSPSRPLVAQSNLERRKA
HRAYTQKSRNKVNTRFDALLDALPTPPPRLNPRSKAEILEYATETVIRLV
AQNNKLELSLALSSSPQLQSWLHNQTQAARTLREVCQPVMRLFTIGLEWK
GAEAWAVDSRLPTQHASLAQAWTFVPPPSGRRPSREDESRMAELATFLDA
AKSSCFATSSNEAVSLVYRRGKPAWLSCEYRQYEGFDDGDFSAERTRMAA
SYGVTDVLYLPLILYNHVQIVVAFYNMRSRSSRQNAELQPQIDPKSSLRV
AQETIAIIGRRFAQLPAVGDFSGGNYGLDQF*

mRNA from alignment at tig00000172_pilon:245778..247373+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5352.t1 ID=Ggra5352.t1|Name=Ggra5352.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1596bp|location=Sequence derived from alignment at tig00000172_pilon:245778..247373+ (Gracilaria gracilis GNS1m male)
ATGTCGCAGCGCGCCCTCGCGTCGCCCGTCACCGTCGCGTCCGCCGCGTT
CTCGCCGTCCGTCTCCGTCGTCATGTCCCACGCGCCGCCCGAAGACGACG
CGTCCAAGGACGCTGCGTTCGATCCACGCCCGCCGCCTCTTCTCCCCCCG
CACTCCGTCATGCACTCCGGCTTCccaccgcagctgcatctctcgcacca
actgccgcagacgctgcctaacttaccgccgccgcacccacagccgccac
agccgccaccacagccaccgccgcagcagcTCTCCTACTCCACGCCCCCG
CCCGACCCCCGCCGCGACCACCTCAACTACGACCTCTTCCACGACATTAA
CCTCCCCCTCGTGCAACCCACCGCCCAACCAGCGCCCTCCGCATTCGCCC
TCGACCCATCAgcagcggcggccgccgccgccgccgccgccgctgccaac
ccatccgtcttccctcgccccaagcccaccgactcctccgcggccgcagc
cgccgccgcggcagccgctgcagccgcggccgccgcgcagccATACGACC
GCCTGCGCCCGCCCGAACAACCCGTGCAGCCAGGCGCGCCCGCCACATAC
GCCGCCACCGCGCTGGGAATCGGCCCGTCGGCGGGCGCCATTTCCAAGCG
AGCCAGCCGCGCCGATCTGTTCGACACCACTTCGTCTCCGTCCGCGCCGT
CGCCGTCGCGCCCGCTCGTGGCGCAATCCAACCTGGAGCGGCGAAAGGCG
CACCGCGCCTACACGCAAAAGTCGCGCAACAAAGTCAACACGCGCTTCGA
CGCGCTGTTGGACGCGTTACCCACGCCGCCGCCGCGTCTCAACCCGCGCT
CCAAGGCGGAGATTCTGGAGTACGCCACCGAGACGGTCATTCGCCTCGTG
GCGCAGAACAACAAGCTGGAGCTGAGTCTGGCGTTGTCCAGCTCGCCGCA
GCTGCAGTCATGGCTGCACAACCAGACGCAGGCGGCGCGCACGCTGCGCG
AGGTGTGCCAACCGGTGATGCGGCTGTTCACCATCGGGCTGGAATGGAAG
GGCGCGGAAGCGTGGGCCGTAGACTCACGGTTACCCACGCAACACGCGTC
GTTGGCACAGGCGTGGACGTTTGTGCCGCCGCCGTCCGGCAGAAGACCTT
CGCGGGAAGACGAGTCGCGAATGGCAGAGCTGGCGACGTTTCTAGACGCT
GCAAAGAGCTCGTGCTTCGCGACGTCGTCGAACGAGGCAGTGTCGCTGGT
GTACCGGCGCGGAAAGCCGGCATGGTTGAGTTGCGAATACCGACAGTACG
AAGGTTTTGACGATGGGGACTTTTCAGCGGAGCGCACGCGAATGGCAGCC
AGTTATGGGGTGACGGATGTGTTGTACCTGCCGTTAATTCTTTACAACCA
CGTGCAGATTGTGGTGGCGTTCTACAACATGCGCTCACGGTCGTCGCGAC
AAAACGCAGAGCTGCAGCCGCAGATCGATCCAAAGTCGTCGCTGCGGGTG
GCGCAGGAGACGATTGCAATCATTGGCAGACGGTTTGCACAGCTGCCGGC
TGTGGGAGACTTTTCGGGCGGAAACTATGGTTTAGATCAGTTCTGA

Coding sequence (CDS) from alignment at tig00000172_pilon:245778..247373+

>Ggra5352.t1 ID=Ggra5352.t1|Name=Ggra5352.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1596bp|location=Sequence derived from alignment at tig00000172_pilon:245778..247373+ (Gracilaria gracilis GNS1m male)
ATGTCGCAGCGCGCCCTCGCGTCGCCCGTCACCGTCGCGTCCGCCGCGTT
CTCGCCGTCCGTCTCCGTCGTCATGTCCCACGCGCCGCCCGAAGACGACG
CGTCCAAGGACGCTGCGTTCGATCCACGCCCGCCGCCTCTTCTCCCCCCG
CACTCCGTCATGCACTCCGGCTTCccaccgcagctgcatctctcgcacca
actgccgcagacgctgcctaacttaccgccgccgcacccacagccgccac
agccgccaccacagccaccgccgcagcagcTCTCCTACTCCACGCCCCCG
CCCGACCCCCGCCGCGACCACCTCAACTACGACCTCTTCCACGACATTAA
CCTCCCCCTCGTGCAACCCACCGCCCAACCAGCGCCCTCCGCATTCGCCC
TCGACCCATCAgcagcggcggccgccgccgccgccgccgccgctgccaac
ccatccgtcttccctcgccccaagcccaccgactcctccgcggccgcagc
cgccgccgcggcagccgctgcagccgcggccgccgcgcagccATACGACC
GCCTGCGCCCGCCCGAACAACCCGTGCAGCCAGGCGCGCCCGCCACATAC
GCCGCCACCGCGCTGGGAATCGGCCCGTCGGCGGGCGCCATTTCCAAGCG
AGCCAGCCGCGCCGATCTGTTCGACACCACTTCGTCTCCGTCCGCGCCGT
CGCCGTCGCGCCCGCTCGTGGCGCAATCCAACCTGGAGCGGCGAAAGGCG
CACCGCGCCTACACGCAAAAGTCGCGCAACAAAGTCAACACGCGCTTCGA
CGCGCTGTTGGACGCGTTACCCACGCCGCCGCCGCGTCTCAACCCGCGCT
CCAAGGCGGAGATTCTGGAGTACGCCACCGAGACGGTCATTCGCCTCGTG
GCGCAGAACAACAAGCTGGAGCTGAGTCTGGCGTTGTCCAGCTCGCCGCA
GCTGCAGTCATGGCTGCACAACCAGACGCAGGCGGCGCGCACGCTGCGCG
AGGTGTGCCAACCGGTGATGCGGCTGTTCACCATCGGGCTGGAATGGAAG
GGCGCGGAAGCGTGGGCCGTAGACTCACGGTTACCCACGCAACACGCGTC
GTTGGCACAGGCGTGGACGTTTGTGCCGCCGCCGTCCGGCAGAAGACCTT
CGCGGGAAGACGAGTCGCGAATGGCAGAGCTGGCGACGTTTCTAGACGCT
GCAAAGAGCTCGTGCTTCGCGACGTCGTCGAACGAGGCAGTGTCGCTGGT
GTACCGGCGCGGAAAGCCGGCATGGTTGAGTTGCGAATACCGACAGTACG
AAGGTTTTGACGATGGGGACTTTTCAGCGGAGCGCACGCGAATGGCAGCC
AGTTATGGGGTGACGGATGTGTTGTACCTGCCGTTAATTCTTTACAACCA
CGTGCAGATTGTGGTGGCGTTCTACAACATGCGCTCACGGTCGTCGCGAC
AAAACGCAGAGCTGCAGCCGCAGATCGATCCAAAGTCGTCGCTGCGGGTG
GCGCAGGAGACGATTGCAATCATTGGCAGACGGTTTGCACAGCTGCCGGC
TGTGGGAGACTTTTCGGGCGGAAACTATGGTTTAGATCAGTTCTGA