Ggra5347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5347.t1
Unique NameGgra5347.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length329
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:228264..229250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog999419.HMPREF1077_01409
Max annot lvl976|Bacteroidetes
Evalue3.19e-08
EggNOG OGsCOG0438@1|root,COG0438@2|Bacteria,4PMDN@976|Bacteroidetes
Descriptiontransferase activity, transferring glycosyl groups
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5347Ggra5347Gracilaria gracilis GNS1m malegenetig00000172_pilon 228264..229250 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5347.t1.start1Ggra5347.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 228264..228266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5347.t1.CDS1Ggra5347.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 228264..229250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5347.t1.exon1Ggra5347.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 228264..229250 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5347.t1.stop1Ggra5347.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 229248..229250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5347.t1Ggra5347.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 228264..229250 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5347.t1 ID=Ggra5347.t1|Name=Ggra5347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=329bp
MSMFVKPQAAQPRGGDDNLEQIYRQFSLHEHLPQPRKKTSRRQLHANDDD
VDDDDDAAADKEADAGLDAMDDGDFADQPPKQAPHPAQESDSAPEADAHA
APAVHLQLGLRRPPEDDAVESQPDADDSAEQIALRFGEDVPRLMSMLNKL
IAQYDIQSMADVPCRAHAHWMPQMLESIAEHNENFKYVCIDTSSLILDAV
KERVGLTVDCRYLKRKFWKEGLPNVDLVFSWAGLDNMKEGNVLRYLQKLS
KSGKKHKLIMLGNHAGSLAKKGDAHKIARFTAEGKPLNFRRKPFNLMKPM
RMIRDLGIDGNDKQLYLYKASEMFRKGK*
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spliced messenger RNA

>Ggra5347.t1 ID=Ggra5347.t1|Name=Ggra5347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000172_pilon:228264..229250+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATGTTCGTCAAGCCGCAGGCCGCGCAGCCGCGCGGCGGCGACGA
CAACCTCGAGCAGATCTACCGCCAATTCTCGCTGCACGAGCATCTGCCGC
AGCCGCGCAAGAAGACCTCGCGCCGCCAGCTTCACGCCAacgacgacgac
gtcgacgacgacgacgacgCTGCCGCCGACAAGGAAGCGGACGCGGGCCT
TGACGCCATGGATGACGGCGACTTCGCCGACCAGCCCCCCAAACAAGCCC
CGCATCCAGCTCAGGAGAGCGACTCGGCGCCCGAAGCGGACGCTCACGCC
GCGCCGGCCGTGCATCTGCAGCTGGGCTTGCGCCGCCCGCCGGAGGACGA
CGCCGTCGAGTCGCAACCGGACGCCGACGATTCCGCCGAGCAGATTGCGC
TTCGCTTTGGAGAAGACGTGCCGCGTTTGATGAGCATGCTCAACAAGCTT
ATCGCGCAGTACGACATTCAGTCCATGGCCGACGTGCCCTGTCGCGCGCA
CGCGCACTGGATGCCGCAGATGCTCGAGTCCATCGCGGAGCACAACGAGA
ACTTCAAGTACGTGTGCATCGACACCAGCAGCTTGATTCTGGACGCCGTC
AAGGAGCGCGTGGGCTTGACGGTCGATTGCAGGTACCTGAAGAGAAAGTT
CTGGAAGGAGGGCTTGCCAAACGTCGATTTGGTGTTCTCGTGGGCCGGTT
TGGATAACATGAAGGAAGGAAACGTTTTACGGTACCTGCAAAAGCTGTCC
AAGTCTGGTAAGAAACACAAGCTTATCATGCTGGGTAACCATGCCGGATC
ACTGGCAAAGAAGGGTGACGCTCACAAGATTGCGCGTTTCACAGCAGAAG
GAAAACCGCTAAACTTCCGACGGAAACCGTTTAACTTGATGAAGCCGATG
AGAATGATTCGAGATCTTGGGATTGATGGAAATGATAAACAGCTCTATCT
GTATAAAGCGAGCGAAATGTTTAGGAAAGGAAAGTGA
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protein sequence of Ggra5347.t1

>Ggra5347.t1 ID=Ggra5347.t1|Name=Ggra5347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=329bp
MSMFVKPQAAQPRGGDDNLEQIYRQFSLHEHLPQPRKKTSRRQLHANDDD
VDDDDDAAADKEADAGLDAMDDGDFADQPPKQAPHPAQESDSAPEADAHA
APAVHLQLGLRRPPEDDAVESQPDADDSAEQIALRFGEDVPRLMSMLNKL
IAQYDIQSMADVPCRAHAHWMPQMLESIAEHNENFKYVCIDTSSLILDAV
KERVGLTVDCRYLKRKFWKEGLPNVDLVFSWAGLDNMKEGNVLRYLQKLS
KSGKKHKLIMLGNHAGSLAKKGDAHKIARFTAEGKPLNFRRKPFNLMKPM
RMIRDLGIDGNDKQLYLYKASEMFRKGK*
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mRNA from alignment at tig00000172_pilon:228264..229250+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5347.t1 ID=Ggra5347.t1|Name=Ggra5347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=987bp|location=Sequence derived from alignment at tig00000172_pilon:228264..229250+ (Gracilaria gracilis GNS1m male)
ATGTCCATGTTCGTCAAGCCGCAGGCCGCGCAGCCGCGCGGCGGCGACGA
CAACCTCGAGCAGATCTACCGCCAATTCTCGCTGCACGAGCATCTGCCGC
AGCCGCGCAAGAAGACCTCGCGCCGCCAGCTTCACGCCAacgacgacgac
gtcgacgacgacgacgacgCTGCCGCCGACAAGGAAGCGGACGCGGGCCT
TGACGCCATGGATGACGGCGACTTCGCCGACCAGCCCCCCAAACAAGCCC
CGCATCCAGCTCAGGAGAGCGACTCGGCGCCCGAAGCGGACGCTCACGCC
GCGCCGGCCGTGCATCTGCAGCTGGGCTTGCGCCGCCCGCCGGAGGACGA
CGCCGTCGAGTCGCAACCGGACGCCGACGATTCCGCCGAGCAGATTGCGC
TTCGCTTTGGAGAAGACGTGCCGCGTTTGATGAGCATGCTCAACAAGCTT
ATCGCGCAGTACGACATTCAGTCCATGGCCGACGTGCCCTGTCGCGCGCA
CGCGCACTGGATGCCGCAGATGCTCGAGTCCATCGCGGAGCACAACGAGA
ACTTCAAGTACGTGTGCATCGACACCAGCAGCTTGATTCTGGACGCCGTC
AAGGAGCGCGTGGGCTTGACGGTCGATTGCAGGTACCTGAAGAGAAAGTT
CTGGAAGGAGGGCTTGCCAAACGTCGATTTGGTGTTCTCGTGGGCCGGTT
TGGATAACATGAAGGAAGGAAACGTTTTACGGTACCTGCAAAAGCTGTCC
AAGTCTGGTAAGAAACACAAGCTTATCATGCTGGGTAACCATGCCGGATC
ACTGGCAAAGAAGGGTGACGCTCACAAGATTGCGCGTTTCACAGCAGAAG
GAAAACCGCTAAACTTCCGACGGAAACCGTTTAACTTGATGAAGCCGATG
AGAATGATTCGAGATCTTGGGATTGATGGAAATGATAAACAGCTCTATCT
GTATAAAGCGAGCGAAATGTTTAGGAAAGGAAAGTGA
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Coding sequence (CDS) from alignment at tig00000172_pilon:228264..229250+

>Ggra5347.t1 ID=Ggra5347.t1|Name=Ggra5347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=987bp|location=Sequence derived from alignment at tig00000172_pilon:228264..229250+ (Gracilaria gracilis GNS1m male)
ATGTCCATGTTCGTCAAGCCGCAGGCCGCGCAGCCGCGCGGCGGCGACGA
CAACCTCGAGCAGATCTACCGCCAATTCTCGCTGCACGAGCATCTGCCGC
AGCCGCGCAAGAAGACCTCGCGCCGCCAGCTTCACGCCAacgacgacgac
gtcgacgacgacgacgacgCTGCCGCCGACAAGGAAGCGGACGCGGGCCT
TGACGCCATGGATGACGGCGACTTCGCCGACCAGCCCCCCAAACAAGCCC
CGCATCCAGCTCAGGAGAGCGACTCGGCGCCCGAAGCGGACGCTCACGCC
GCGCCGGCCGTGCATCTGCAGCTGGGCTTGCGCCGCCCGCCGGAGGACGA
CGCCGTCGAGTCGCAACCGGACGCCGACGATTCCGCCGAGCAGATTGCGC
TTCGCTTTGGAGAAGACGTGCCGCGTTTGATGAGCATGCTCAACAAGCTT
ATCGCGCAGTACGACATTCAGTCCATGGCCGACGTGCCCTGTCGCGCGCA
CGCGCACTGGATGCCGCAGATGCTCGAGTCCATCGCGGAGCACAACGAGA
ACTTCAAGTACGTGTGCATCGACACCAGCAGCTTGATTCTGGACGCCGTC
AAGGAGCGCGTGGGCTTGACGGTCGATTGCAGGTACCTGAAGAGAAAGTT
CTGGAAGGAGGGCTTGCCAAACGTCGATTTGGTGTTCTCGTGGGCCGGTT
TGGATAACATGAAGGAAGGAAACGTTTTACGGTACCTGCAAAAGCTGTCC
AAGTCTGGTAAGAAACACAAGCTTATCATGCTGGGTAACCATGCCGGATC
ACTGGCAAAGAAGGGTGACGCTCACAAGATTGCGCGTTTCACAGCAGAAG
GAAAACCGCTAAACTTCCGACGGAAACCGTTTAACTTGATGAAGCCGATG
AGAATGATTCGAGATCTTGGGATTGATGGAAATGATAAACAGCTCTATCT
GTATAAAGCGAGCGAAATGTTTAGGAAAGGAAAGTGA
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