Ggra5338.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5338.t1
Unique Name	Ggra5338.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	608

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:181328..183151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	86049.XP_008726039.1
PFAMs	LtrA
Max annot lvl	4751\|Fungi
Evalue	6.39e-12
EggNOG OGs	2AW51@1\|root,2RZXZ@2759\|Eukaryota,38B87@33154\|Opisthokonta,3NZND@4751\|Fungi,3QNXA@4890\|Ascomycota,20JJS@147545\|Eurotiomycetes,3MVQ6@451870\|Chaetothyriomycetidae
Description	Bacterial low temperature requirement A protein (LtrA)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5338	Ggra5338	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 181328..183151 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5338.t1.start1	Ggra5338.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 181328..181330 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5338.t1.CDS1	Ggra5338.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 181328..183151 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5338.t1.exon1	Ggra5338.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 181328..183151 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5338.t1.stop1	Ggra5338.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 183149..183151 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5338.t1	Ggra5338.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 181328..183151 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:181328..183151+
coding sequence from alignment at tig00000172_pilon:181328..183151+

mRNA sequence

>Ggra5338.t1 ID=Ggra5338.t1|Name=Ggra5338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=608bp
MKPSDSSSLPEHSTPSGSGRGTSSTYAPQQPVHHVEEFGEVENIQHQEVE
SHHSDAAPPPLRERDRKATRNLKNKAFRTLFDSRHLQQYFWGETLYRSPH
TRTVGPDELFFDLVLVGGVAALGHELRENFSSWRDVEKFFLLFNAIYSSW
RVIIMMWNFWGMKKDLFEKITIYAVFFCLIGIALGAHGAFQDGVRPYVAI
CSFLATAIPCFVSYVWASQERLLKNPQNRFNQLKAVAAVGIIVVSPYFAA
AFVGSERATRILYWIPLVLQFFSVHLTGSLYRALHRNRPATRLAVNIELM
VEKYEVLTMIVLGESVIGILFEAGKFVTSEGARLGRLYAVAAATAAMLYA
LQTLYVNVDAPILKGGQHAIRHNAYHGIAWSQLHTLYHMALILFATGLGI
SIHDVVLPPKSDAVQRWLVRAGETATKVSGFTFERKQRWLFSVGWGMSMI
ISTAFAALHKGGPRAASKSYRTTARVTTALAVMIGLPFIDLRADLYLGVH
TAVLVFFGITEFILVHFDRLGFFRSEGSSKATSLAGESFETFDSDDEDIR
NAPTNPEDVKLDHSSDLPEEISRALKERMCKGHACPMVQVLSKAKKKREG
TGGSTNV*

spliced messenger RNA

>Ggra5338.t1 ID=Ggra5338.t1|Name=Ggra5338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000172_pilon:181328..183151+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCGTCGGATTCCTCCTCTCTGCCCGAGCATTCCACGCCGAGCGG
TAGTGGGAGAGGCACAAGTTCCACCTACGCGCCGCAACAACCAGTTCATC
ACGTTGAGGAATTCGGAGAAGTTGAGAACATTCAACATCAAGAGGTTGAA
TCTCATCACAGCGATGCCGCGCCGCCACCGCTGAGAGAAAGGGACCGCAA
GGCAACCCGCAACCTCAAGAATAAGGCTTTTCGAACTCTCTTTGACAGTA
GACATCTGCAGCAATACTTTTGGGGCGAGACGCTGTACAGAAGTCCTCAT
ACTAGGACTGTCGGTCCGGATGAACTTTTCTTCGACTTGGTGCTTGTAGG
CGGGGTTGCTGCTCTGGGACATGAACTGAGGGAGAATTTCTCCTCGTGGC
GGGATGTAGAAAAGTTTTTCCTCTTGTTCAACGCAATCTACAGTAGCTGG
CGGGTTATCATTATGATGTGGAACTTTTGGGGCATGAAGAAGGATTTGTT
CGAGAAGATTACCATCTATGCAGTTTTCTTTTGCTTGATTGGCATCGCAT
TGGGAGCACATGGCGCCTTTCAAGATGGTGTTCGTCCCTATGTCGCGATT
TGTTCCTTCCTAGCTACAGCAATTCCTTGCTTCGTTTCGTACGTTTGGGC
AAGTCAAGAGCGATTATTGAAGAATCCGCAAAACCGATTCAACCAGTTAA
AAGCTGTGGCTGCTGTTGGCATCATTGTCGTTTCGCCGTACTTTGCTGCT
GCGTTTGTTGGATCTGAACGGGCGACCCGCATATTGTACTGGATTCCACT
TGTCCTGCAATTCTTTTCTGTTCACCTCACAGGCTCGCTGTATCGGGCTC
TTCATCGAAATCGCCCAGCTACACGGTTGGCGGTCAATATTGAGCTTATG
GTGGAAAAGTATGAAGTGCTAACAATGATTGTCTTAGGTGAATCTGTGAT
TGGAATCCTATTCGAGGCAGGCAAATTTGTAACCAGTGAGGGAGCAAGAT
TGGGTCGACTGTACGCTGTAGCAGCCGCAACGGCTGCAATGCTTTATGCT
TTGCAGACATTGTACGTCAACGTGGATGCGCCGATTCTAAAAGGAGGACA
GCATGCTATACGCCACAATGCTTATCACGGTATCGCGTGGAGTCAGTTGC
ATACTCTGTATCACATGGCACTAATCCTGTTTGCAACAGGACTGGGAATA
TCCATACATGACGTTGTTTTGCCGCCGAAGAGTGATGCTGTTCAGCGTTG
GCTTGTGCGCGCTGGGGAAACGGCAACGAAGGTGTCAGGGTTCACTTTTG
AACGCAAACAGCGATGGTTGTTCTCTGTTGGATGGGGTATGTCCATGATA
ATCTCGACTGCGTTTGCGGCACTACACAAGGGCGGACCACGCGCTGCGTC
AAAGTCGTATCGAACTACAGCTCGCGTGACTACAGCACTTGCAGTTATGA
TTGGTCTTCCATTCATCGACCTTCGCGCCGACTTGTACCTTGGAGTTCAC
ACTGCTGTACTTGTGTTTTTTGGCATCACCGAATTTATCCTTGTTCACTT
TGATCGGCTTGGATTCTTCCGATCTGAGGGTAGCAGCAAGGCCACCAGTC
TAGCTGGAGAATCGTTTGAAACATTTGATTCAGATGATGAAGATATTCGC
AATGCACCTACCAACCCGGAGGATGTGAAGCTTGATCACAGCTCTGATCT
TCCAGAAGAAATTTCAAGGGCCTTGAAAGAACGGATGTGCAAAGGGCATG
CTTGTCCAATGGTCCAGGTACTGTCAAAGGCGAAAAAGAAACGCGAAGGA
ACAGGGGGCAGTACCAATGTATAA

protein sequence of Ggra5338.t1

>Ggra5338.t1 ID=Ggra5338.t1|Name=Ggra5338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=608bp
MKPSDSSSLPEHSTPSGSGRGTSSTYAPQQPVHHVEEFGEVENIQHQEVE
SHHSDAAPPPLRERDRKATRNLKNKAFRTLFDSRHLQQYFWGETLYRSPH
TRTVGPDELFFDLVLVGGVAALGHELRENFSSWRDVEKFFLLFNAIYSSW
RVIIMMWNFWGMKKDLFEKITIYAVFFCLIGIALGAHGAFQDGVRPYVAI
CSFLATAIPCFVSYVWASQERLLKNPQNRFNQLKAVAAVGIIVVSPYFAA
AFVGSERATRILYWIPLVLQFFSVHLTGSLYRALHRNRPATRLAVNIELM
VEKYEVLTMIVLGESVIGILFEAGKFVTSEGARLGRLYAVAAATAAMLYA
LQTLYVNVDAPILKGGQHAIRHNAYHGIAWSQLHTLYHMALILFATGLGI
SIHDVVLPPKSDAVQRWLVRAGETATKVSGFTFERKQRWLFSVGWGMSMI
ISTAFAALHKGGPRAASKSYRTTARVTTALAVMIGLPFIDLRADLYLGVH
TAVLVFFGITEFILVHFDRLGFFRSEGSSKATSLAGESFETFDSDDEDIR
NAPTNPEDVKLDHSSDLPEEISRALKERMCKGHACPMVQVLSKAKKKREG
TGGSTNV*

mRNA from alignment at tig00000172_pilon:181328..183151+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5338.t1 ID=Ggra5338.t1|Name=Ggra5338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1824bp|location=Sequence derived from alignment at tig00000172_pilon:181328..183151+ (Gracilaria gracilis GNS1m male)
ATGAAGCCGTCGGATTCCTCCTCTCTGCCCGAGCATTCCACGCCGAGCGG
TAGTGGGAGAGGCACAAGTTCCACCTACGCGCCGCAACAACCAGTTCATC
ACGTTGAGGAATTCGGAGAAGTTGAGAACATTCAACATCAAGAGGTTGAA
TCTCATCACAGCGATGCCGCGCCGCCACCGCTGAGAGAAAGGGACCGCAA
GGCAACCCGCAACCTCAAGAATAAGGCTTTTCGAACTCTCTTTGACAGTA
GACATCTGCAGCAATACTTTTGGGGCGAGACGCTGTACAGAAGTCCTCAT
ACTAGGACTGTCGGTCCGGATGAACTTTTCTTCGACTTGGTGCTTGTAGG
CGGGGTTGCTGCTCTGGGACATGAACTGAGGGAGAATTTCTCCTCGTGGC
GGGATGTAGAAAAGTTTTTCCTCTTGTTCAACGCAATCTACAGTAGCTGG
CGGGTTATCATTATGATGTGGAACTTTTGGGGCATGAAGAAGGATTTGTT
CGAGAAGATTACCATCTATGCAGTTTTCTTTTGCTTGATTGGCATCGCAT
TGGGAGCACATGGCGCCTTTCAAGATGGTGTTCGTCCCTATGTCGCGATT
TGTTCCTTCCTAGCTACAGCAATTCCTTGCTTCGTTTCGTACGTTTGGGC
AAGTCAAGAGCGATTATTGAAGAATCCGCAAAACCGATTCAACCAGTTAA
AAGCTGTGGCTGCTGTTGGCATCATTGTCGTTTCGCCGTACTTTGCTGCT
GCGTTTGTTGGATCTGAACGGGCGACCCGCATATTGTACTGGATTCCACT
TGTCCTGCAATTCTTTTCTGTTCACCTCACAGGCTCGCTGTATCGGGCTC
TTCATCGAAATCGCCCAGCTACACGGTTGGCGGTCAATATTGAGCTTATG
GTGGAAAAGTATGAAGTGCTAACAATGATTGTCTTAGGTGAATCTGTGAT
TGGAATCCTATTCGAGGCAGGCAAATTTGTAACCAGTGAGGGAGCAAGAT
TGGGTCGACTGTACGCTGTAGCAGCCGCAACGGCTGCAATGCTTTATGCT
TTGCAGACATTGTACGTCAACGTGGATGCGCCGATTCTAAAAGGAGGACA
GCATGCTATACGCCACAATGCTTATCACGGTATCGCGTGGAGTCAGTTGC
ATACTCTGTATCACATGGCACTAATCCTGTTTGCAACAGGACTGGGAATA
TCCATACATGACGTTGTTTTGCCGCCGAAGAGTGATGCTGTTCAGCGTTG
GCTTGTGCGCGCTGGGGAAACGGCAACGAAGGTGTCAGGGTTCACTTTTG
AACGCAAACAGCGATGGTTGTTCTCTGTTGGATGGGGTATGTCCATGATA
ATCTCGACTGCGTTTGCGGCACTACACAAGGGCGGACCACGCGCTGCGTC
AAAGTCGTATCGAACTACAGCTCGCGTGACTACAGCACTTGCAGTTATGA
TTGGTCTTCCATTCATCGACCTTCGCGCCGACTTGTACCTTGGAGTTCAC
ACTGCTGTACTTGTGTTTTTTGGCATCACCGAATTTATCCTTGTTCACTT
TGATCGGCTTGGATTCTTCCGATCTGAGGGTAGCAGCAAGGCCACCAGTC
TAGCTGGAGAATCGTTTGAAACATTTGATTCAGATGATGAAGATATTCGC
AATGCACCTACCAACCCGGAGGATGTGAAGCTTGATCACAGCTCTGATCT
TCCAGAAGAAATTTCAAGGGCCTTGAAAGAACGGATGTGCAAAGGGCATG
CTTGTCCAATGGTCCAGGTACTGTCAAAGGCGAAAAAGAAACGCGAAGGA
ACAGGGGGCAGTACCAATGTATAA

Coding sequence (CDS) from alignment at tig00000172_pilon:181328..183151+

>Ggra5338.t1 ID=Ggra5338.t1|Name=Ggra5338.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1824bp|location=Sequence derived from alignment at tig00000172_pilon:181328..183151+ (Gracilaria gracilis GNS1m male)
ATGAAGCCGTCGGATTCCTCCTCTCTGCCCGAGCATTCCACGCCGAGCGG
TAGTGGGAGAGGCACAAGTTCCACCTACGCGCCGCAACAACCAGTTCATC
ACGTTGAGGAATTCGGAGAAGTTGAGAACATTCAACATCAAGAGGTTGAA
TCTCATCACAGCGATGCCGCGCCGCCACCGCTGAGAGAAAGGGACCGCAA
GGCAACCCGCAACCTCAAGAATAAGGCTTTTCGAACTCTCTTTGACAGTA
GACATCTGCAGCAATACTTTTGGGGCGAGACGCTGTACAGAAGTCCTCAT
ACTAGGACTGTCGGTCCGGATGAACTTTTCTTCGACTTGGTGCTTGTAGG
CGGGGTTGCTGCTCTGGGACATGAACTGAGGGAGAATTTCTCCTCGTGGC
GGGATGTAGAAAAGTTTTTCCTCTTGTTCAACGCAATCTACAGTAGCTGG
CGGGTTATCATTATGATGTGGAACTTTTGGGGCATGAAGAAGGATTTGTT
CGAGAAGATTACCATCTATGCAGTTTTCTTTTGCTTGATTGGCATCGCAT
TGGGAGCACATGGCGCCTTTCAAGATGGTGTTCGTCCCTATGTCGCGATT
TGTTCCTTCCTAGCTACAGCAATTCCTTGCTTCGTTTCGTACGTTTGGGC
AAGTCAAGAGCGATTATTGAAGAATCCGCAAAACCGATTCAACCAGTTAA
AAGCTGTGGCTGCTGTTGGCATCATTGTCGTTTCGCCGTACTTTGCTGCT
GCGTTTGTTGGATCTGAACGGGCGACCCGCATATTGTACTGGATTCCACT
TGTCCTGCAATTCTTTTCTGTTCACCTCACAGGCTCGCTGTATCGGGCTC
TTCATCGAAATCGCCCAGCTACACGGTTGGCGGTCAATATTGAGCTTATG
GTGGAAAAGTATGAAGTGCTAACAATGATTGTCTTAGGTGAATCTGTGAT
TGGAATCCTATTCGAGGCAGGCAAATTTGTAACCAGTGAGGGAGCAAGAT
TGGGTCGACTGTACGCTGTAGCAGCCGCAACGGCTGCAATGCTTTATGCT
TTGCAGACATTGTACGTCAACGTGGATGCGCCGATTCTAAAAGGAGGACA
GCATGCTATACGCCACAATGCTTATCACGGTATCGCGTGGAGTCAGTTGC
ATACTCTGTATCACATGGCACTAATCCTGTTTGCAACAGGACTGGGAATA
TCCATACATGACGTTGTTTTGCCGCCGAAGAGTGATGCTGTTCAGCGTTG
GCTTGTGCGCGCTGGGGAAACGGCAACGAAGGTGTCAGGGTTCACTTTTG
AACGCAAACAGCGATGGTTGTTCTCTGTTGGATGGGGTATGTCCATGATA
ATCTCGACTGCGTTTGCGGCACTACACAAGGGCGGACCACGCGCTGCGTC
AAAGTCGTATCGAACTACAGCTCGCGTGACTACAGCACTTGCAGTTATGA
TTGGTCTTCCATTCATCGACCTTCGCGCCGACTTGTACCTTGGAGTTCAC
ACTGCTGTACTTGTGTTTTTTGGCATCACCGAATTTATCCTTGTTCACTT
TGATCGGCTTGGATTCTTCCGATCTGAGGGTAGCAGCAAGGCCACCAGTC
TAGCTGGAGAATCGTTTGAAACATTTGATTCAGATGATGAAGATATTCGC
AATGCACCTACCAACCCGGAGGATGTGAAGCTTGATCACAGCTCTGATCT
TCCAGAAGAAATTTCAAGGGCCTTGAAAGAACGGATGTGCAAAGGGCATG
CTTGTCCAATGGTCCAGGTACTGTCAAAGGCGAAAAAGAAACGCGAAGGA
ACAGGGGGCAGTACCAATGTATAA