Ggra5335.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5335.t1
Unique Name	Ggra5335.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	769

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:127379..129784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707462.1
PFAMs	Lipase_3
Max annot lvl	2759\|Eukaryota
Evalue	1.18e-39
EggNOG OGs	KOG4569@1\|root,KOG4569@2759\|Eukaryota
Description	phospholipase A1 activity
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5335	Ggra5335	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 127379..129784 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1	Ggra5335.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 127379..129784 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1.stop1	Ggra5335.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 127379..127381 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1.CDS1	Ggra5335.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 127379..127444 -
Ggra5335.t1.CDS2	Ggra5335.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 127544..129784 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1.exon1	Ggra5335.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 127379..127444 -
Ggra5335.t1.exon2	Ggra5335.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 127544..129784 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1.intron1	Ggra5335.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000172_pilon 127445..127543 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5335.t1.start1	Ggra5335.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 129782..129784 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:127379..129784-
coding sequence from alignment at tig00000172_pilon:127379..129784-

mRNA sequence

>Ggra5335.t1 ID=Ggra5335.t1|Name=Ggra5335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=769bp
MKQRAGTCFARNVLFLSPHHTAQNSRSTCPRCAQPSPGDSQNETADTSKF
LTNPFKGIPSPSLPSLPDLTAFYQYFPDSREKAVQIMSQITELWQLARNP
NTPVHTLSLITSVNDLLFQLLEETLVFPDEPPISIPTAPEFDPILSLQLA
AYAFRAYLEPSEAAYREIAVSFLPEAPDAKVYNHLAFPDTSFIASSATGL
FMIQLTGDIDDAYLTATVNDGISLDLLKLKHITILRCIRNHHEDSGEPRD
VLTFDLYNSREDYASSAKPTHSASIDLRDIVHRALDTGDTVHGNTEELLF
APVSEENRSSNSLQFSWPTDLGLKFPSFPFSNEKVNKSSEVEAERHMVSI
QVSFVPFAGMDSIQAPGTSEMSSTAPSEGSDDSSNFVDVAQKALEAFQAT
FWRVEKENQQDEQNLKGMDRGVRDIVKEVLRSKLPRGAMPTAKDWKRFIV
AVTSLYKSIEDNRIIGSTTTLSEQLEGTLFVESMSTDTQVWLYRDVEKKN
LVVSFRGTEQVKWRDFFTDAQTFLQRWVPGEDIDLTVKVGLTVGLETFVP
SILPTSKLANSIPDDAMAVHYGFLRAYFSVQKVLLRYILSLTSNLEEDYS
IYFTGHSLGGALAIVAAADFSARYNLDNVCCMSYGAPKVGNINFARRYNE
LVPNSFRIVNDEDLVSRMPRSVSEGNAVSKYKHSGRTVLLNDEGDYWVEG
MVSSPYQNGKSVFDVLHERCVNLSDLLEMEQRLWDNLLSGKSVQHHMESS
YFAAMHQVVRRYIKENLS*

spliced messenger RNA

>Ggra5335.t1 ID=Ggra5335.t1|Name=Ggra5335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2307bp|location=Sequence derived from alignment at tig00000172_pilon:127379..129784- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACAAAGGGCTGGAACGTGCTTTGCCAGAAACGTTTTGTTTCTCAG
TCCTCACCACACTGCCCAAAACTCTCGGTCGACATGCCCACGTTGTGCTC
AACCATCCCCCGGTGACTCGCAGAATGAAACTGCAGACACCTCCAAGTTT
CTAACCAACCCATTCAAGGGGATTCCGTCACCATCCCTTCCTTCATTACC
GGATTTAACAGCCTTCTATCAGTACTTTCCTGATTCAAGAGAGAAGGCTG
TACAGATAATGAGCCAGATAACTGAGCTATGGCAACTAGCAAGGAACCCC
AATACTCCTGTACACACTCTTTCATTGATTACTTCTGTGAACGACTTGCT
GTTTCAGCTCCTGGAGGAGACTTTGGTATTTCCAGACGAGCCCCCCATAT
CCATACCGACGGCCCCGGAATTCGATCCTATTCTAAGTCTTCAACTTGCC
GCTTACGCATTTCGTGCGTACTTGGAGCCTTCGGAAGCTGCCTATCGTGA
GATTGCCGTTTCTTTTCTCCCAGAAGCACCTGATGCTAAAGTGTATAACC
ATCTTGCGTTTCCTGATACTTCTTTCATAGCTTCGTCAGCGACGGGGCTC
TTCATGATCCAACTGACCGGCGACATAGATGATGCTTATCTAACTGCTAC
TGTCAATGACGGAATCTCACTGGACCTGTTAAAACTCAAGCACATCACGA
TTCTGCGATGTATTCGTAATCATCACGAAGATAGTGGAGAACCTCGTGAT
GTACTAACTTTCGACTTGTACAATTCGAGAGAAGACTATGCGTCATCCGC
TAAACCGACGCATTCGGCAAGCATAGATCTCCGAGACATTGTGCATAGGG
CGCTAGACACCGGGGACACGGTCCATGGGAACACCGAAGAGCTTTTGTTT
GCTCCTGTCAGTGAGGAGAATAGGAGCTCCAACAGCCTGCAATTCTCATG
GCCTACTGACCTTGGATTGAAGTTCCCTTCGTTTCCATTTTCAAATGAAA
AGGTTAACAAGTCAAGCGAAGTAGAGGCAGAAAGGCATATGGTTTCAATT
CAAGTGAGCTTTGTACCGTTTGCCGGCATGGACTCGATTCAAGCACCAGG
CACATCAGAAATGTCGTCGACCGCACCTTCTGAGGGTTCAGATGATTCTT
CGAACTTCGTCGATGTAGCACAGAAAGCGCTGGAAGCATTTCAGGCAACA
TTTTGGAGAGTAGAGAAAGAAAACCAACAAGACGAGCAAAACTTGAAAGG
AATGGATCGGGGGGTTCGAGACATTGTGAAAGAAGTGTTACGTTCCAAAC
TTCCAAGAGGGGCAATGCCAACAGCAAAGGATTGGAAACGTTTCATTGTC
GCGGTAACATCACTGTATAAATCGATCGAAGATAATCGCATCATTGGTAG
CACAACCACCCTGAGTGAACAATTGGAGGGGACGTTGTTTGTTGAGTCCA
TGTCCACGGACACTCAGGTCTGGCTGTACCGGGACGTTGAGAAGAAAAAT
CTGGTCGTGTCTTTCAGAGGAACTGAGCAAGTCAAATGGAGAGACTTCTT
TACAGATGCACAAACCTTCCTCCAAAGATGGGTTCCAGGAGAGGACATTG
ACTTAACAGTGAAGGTGGGACTCACTGTCGGGCTCGAGACTTTTGTACCA
AGCATACTTCCGACATCCAAGTTAGCTAATTCAATCCCTGACGATGCAAT
GGCTGTACATTATGGGTTTCTCAGGGCGTACTTTAGTGTGCAGAAGGTTT
TGCTCCGGTACATTTTATCACTAACTTCCAACCTGGAAGAAGATTACTCT
ATTTACTTCACTGGGCATTCTCTTGGAGGTGCACTTGCGATTGTAGCGGC
TGCAGACTTTTCTGCTCGGTACAACTTGGATAACGTGTGCTGCATGTCAT
ATGGAGCTCCAAAGGTTGGAAACATTAACTTTGCGAGACGATATAACGAA
CTTGTTCCGAACTCTTTTCGAATTGTGAATGATGAGGATCTTGTTTCTCG
TATGCCGCGTTCTGTGTCTGAAGGAAATGCTGTGAGTAAATACAAACATT
CGGGTAGGACTGTTCTCTTGAATGATGAAGGCGACTATTGGGTTGAAGGT
ATGGTCAGCTCTCCGTACCAGAATGGCAAATCTGTGTTTGATGTGCTTCA
TGAACGATGTGTTAATCTCTCAGATTTGCTGGAAATGGAACAACGTCTTT
GGGACAATCTGCTGTCAGGGAAATCGGTCCAGCATCATATGGAGAGCTCA
TATTTCGCGGCGATGCACCAGGTAGTGAGAAGGTATATAAAAGAGAACCT
CAGTTAG

protein sequence of Ggra5335.t1

>Ggra5335.t1 ID=Ggra5335.t1|Name=Ggra5335.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=769bp
MKQRAGTCFARNVLFLSPHHTAQNSRSTCPRCAQPSPGDSQNETADTSKF
LTNPFKGIPSPSLPSLPDLTAFYQYFPDSREKAVQIMSQITELWQLARNP
NTPVHTLSLITSVNDLLFQLLEETLVFPDEPPISIPTAPEFDPILSLQLA
AYAFRAYLEPSEAAYREIAVSFLPEAPDAKVYNHLAFPDTSFIASSATGL
FMIQLTGDIDDAYLTATVNDGISLDLLKLKHITILRCIRNHHEDSGEPRD
VLTFDLYNSREDYASSAKPTHSASIDLRDIVHRALDTGDTVHGNTEELLF
APVSEENRSSNSLQFSWPTDLGLKFPSFPFSNEKVNKSSEVEAERHMVSI
QVSFVPFAGMDSIQAPGTSEMSSTAPSEGSDDSSNFVDVAQKALEAFQAT
FWRVEKENQQDEQNLKGMDRGVRDIVKEVLRSKLPRGAMPTAKDWKRFIV
AVTSLYKSIEDNRIIGSTTTLSEQLEGTLFVESMSTDTQVWLYRDVEKKN
LVVSFRGTEQVKWRDFFTDAQTFLQRWVPGEDIDLTVKVGLTVGLETFVP
SILPTSKLANSIPDDAMAVHYGFLRAYFSVQKVLLRYILSLTSNLEEDYS
IYFTGHSLGGALAIVAAADFSARYNLDNVCCMSYGAPKVGNINFARRYNE
LVPNSFRIVNDEDLVSRMPRSVSEGNAVSKYKHSGRTVLLNDEGDYWVEG
MVSSPYQNGKSVFDVLHERCVNLSDLLEMEQRLWDNLLSGKSVQHHMESS
YFAAMHQVVRRYIKENLS*

mRNA from alignment at tig00000172_pilon:127379..129784-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5335.t1 ID=Ggra5335.t1|Name=Ggra5335.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2406bp|location=Sequence derived from alignment at tig00000172_pilon:127379..129784- (Gracilaria gracilis GNS1m male)
ATGAAACAAAGGGCTGGAACGTGCTTTGCCAGAAACGTTTTGTTTCTCAG
TCCTCACCACACTGCCCAAAACTCTCGGTCGACATGCCCACGTTGTGCTC
AACCATCCCCCGGTGACTCGCAGAATGAAACTGCAGACACCTCCAAGTTT
CTAACCAACCCATTCAAGGGGATTCCGTCACCATCCCTTCCTTCATTACC
GGATTTAACAGCCTTCTATCAGTACTTTCCTGATTCAAGAGAGAAGGCTG
TACAGATAATGAGCCAGATAACTGAGCTATGGCAACTAGCAAGGAACCCC
AATACTCCTGTACACACTCTTTCATTGATTACTTCTGTGAACGACTTGCT
GTTTCAGCTCCTGGAGGAGACTTTGGTATTTCCAGACGAGCCCCCCATAT
CCATACCGACGGCCCCGGAATTCGATCCTATTCTAAGTCTTCAACTTGCC
GCTTACGCATTTCGTGCGTACTTGGAGCCTTCGGAAGCTGCCTATCGTGA
GATTGCCGTTTCTTTTCTCCCAGAAGCACCTGATGCTAAAGTGTATAACC
ATCTTGCGTTTCCTGATACTTCTTTCATAGCTTCGTCAGCGACGGGGCTC
TTCATGATCCAACTGACCGGCGACATAGATGATGCTTATCTAACTGCTAC
TGTCAATGACGGAATCTCACTGGACCTGTTAAAACTCAAGCACATCACGA
TTCTGCGATGTATTCGTAATCATCACGAAGATAGTGGAGAACCTCGTGAT
GTACTAACTTTCGACTTGTACAATTCGAGAGAAGACTATGCGTCATCCGC
TAAACCGACGCATTCGGCAAGCATAGATCTCCGAGACATTGTGCATAGGG
CGCTAGACACCGGGGACACGGTCCATGGGAACACCGAAGAGCTTTTGTTT
GCTCCTGTCAGTGAGGAGAATAGGAGCTCCAACAGCCTGCAATTCTCATG
GCCTACTGACCTTGGATTGAAGTTCCCTTCGTTTCCATTTTCAAATGAAA
AGGTTAACAAGTCAAGCGAAGTAGAGGCAGAAAGGCATATGGTTTCAATT
CAAGTGAGCTTTGTACCGTTTGCCGGCATGGACTCGATTCAAGCACCAGG
CACATCAGAAATGTCGTCGACCGCACCTTCTGAGGGTTCAGATGATTCTT
CGAACTTCGTCGATGTAGCACAGAAAGCGCTGGAAGCATTTCAGGCAACA
TTTTGGAGAGTAGAGAAAGAAAACCAACAAGACGAGCAAAACTTGAAAGG
AATGGATCGGGGGGTTCGAGACATTGTGAAAGAAGTGTTACGTTCCAAAC
TTCCAAGAGGGGCAATGCCAACAGCAAAGGATTGGAAACGTTTCATTGTC
GCGGTAACATCACTGTATAAATCGATCGAAGATAATCGCATCATTGGTAG
CACAACCACCCTGAGTGAACAATTGGAGGGGACGTTGTTTGTTGAGTCCA
TGTCCACGGACACTCAGGTCTGGCTGTACCGGGACGTTGAGAAGAAAAAT
CTGGTCGTGTCTTTCAGAGGAACTGAGCAAGTCAAATGGAGAGACTTCTT
TACAGATGCACAAACCTTCCTCCAAAGATGGGTTCCAGGAGAGGACATTG
ACTTAACAGTGAAGGTGGGACTCACTGTCGGGCTCGAGACTTTTGTACCA
AGCATACTTCCGACATCCAAGTTAGCTAATTCAATCCCTGACGATGCAAT
GGCTGTACATTATGGGTTTCTCAGGGCGTACTTTAGTGTGCAGAAGGTTT
TGCTCCGGTACATTTTATCACTAACTTCCAACCTGGAAGAAGATTACTCT
ATTTACTTCACTGGGCATTCTCTTGGAGGTGCACTTGCGATTGTAGCGGC
TGCAGACTTTTCTGCTCGGTACAACTTGGATAACGTGTGCTGCATGTCAT
ATGGAGCTCCAAAGGTTGGAAACATTAACTTTGCGAGACGATATAACGAA
CTTGTTCCGAACTCTTTTCGAATTGTGAATGATGAGGATCTTGTTTCTCG
TATGCCGCGTTCTGTGTCTGAAGGAAATGCTGTGAGTAAATACAAACATT
CGGGTAGGACTGTTCTCTTGAATGATGAAGGCGACTATTGGGTTGAAGGT
ATGGTCAGCTCTCCGTACCAGAATGGCAAATCTGTGTTTGATGTGCTTCA
TGAACGATGTGTTAATCTCTCAGATTTGCTGGAAATGGAACAACGTCTTT
GGGACAATCTGCTGTCAGGGAAATCGGTCCAGCATCATATGGTACGTTTG
CGTCTATCAAAGCGATGACTTGTTCGACTCATGTTTTACATGTTGATCTA
ACCTATTTATGATTCTTCGGCTTACCACTGAGTTACGCAGGAGAGCTCAT
ATTTCGCGGCGATGCACCAGGTAGTGAGAAGGTATATAAAAGAGAACCTC
AGTTAG

Coding sequence (CDS) from alignment at tig00000172_pilon:127379..129784-

>Ggra5335.t1 ID=Ggra5335.t1|Name=Ggra5335.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2307bp|location=Sequence derived from alignment at tig00000172_pilon:127379..129784- (Gracilaria gracilis GNS1m male)
ATGAAACAAAGGGCTGGAACGTGCTTTGCCAGAAACGTTTTGTTTCTCAG
TCCTCACCACACTGCCCAAAACTCTCGGTCGACATGCCCACGTTGTGCTC
AACCATCCCCCGGTGACTCGCAGAATGAAACTGCAGACACCTCCAAGTTT
CTAACCAACCCATTCAAGGGGATTCCGTCACCATCCCTTCCTTCATTACC
GGATTTAACAGCCTTCTATCAGTACTTTCCTGATTCAAGAGAGAAGGCTG
TACAGATAATGAGCCAGATAACTGAGCTATGGCAACTAGCAAGGAACCCC
AATACTCCTGTACACACTCTTTCATTGATTACTTCTGTGAACGACTTGCT
GTTTCAGCTCCTGGAGGAGACTTTGGTATTTCCAGACGAGCCCCCCATAT
CCATACCGACGGCCCCGGAATTCGATCCTATTCTAAGTCTTCAACTTGCC
GCTTACGCATTTCGTGCGTACTTGGAGCCTTCGGAAGCTGCCTATCGTGA
GATTGCCGTTTCTTTTCTCCCAGAAGCACCTGATGCTAAAGTGTATAACC
ATCTTGCGTTTCCTGATACTTCTTTCATAGCTTCGTCAGCGACGGGGCTC
TTCATGATCCAACTGACCGGCGACATAGATGATGCTTATCTAACTGCTAC
TGTCAATGACGGAATCTCACTGGACCTGTTAAAACTCAAGCACATCACGA
TTCTGCGATGTATTCGTAATCATCACGAAGATAGTGGAGAACCTCGTGAT
GTACTAACTTTCGACTTGTACAATTCGAGAGAAGACTATGCGTCATCCGC
TAAACCGACGCATTCGGCAAGCATAGATCTCCGAGACATTGTGCATAGGG
CGCTAGACACCGGGGACACGGTCCATGGGAACACCGAAGAGCTTTTGTTT
GCTCCTGTCAGTGAGGAGAATAGGAGCTCCAACAGCCTGCAATTCTCATG
GCCTACTGACCTTGGATTGAAGTTCCCTTCGTTTCCATTTTCAAATGAAA
AGGTTAACAAGTCAAGCGAAGTAGAGGCAGAAAGGCATATGGTTTCAATT
CAAGTGAGCTTTGTACCGTTTGCCGGCATGGACTCGATTCAAGCACCAGG
CACATCAGAAATGTCGTCGACCGCACCTTCTGAGGGTTCAGATGATTCTT
CGAACTTCGTCGATGTAGCACAGAAAGCGCTGGAAGCATTTCAGGCAACA
TTTTGGAGAGTAGAGAAAGAAAACCAACAAGACGAGCAAAACTTGAAAGG
AATGGATCGGGGGGTTCGAGACATTGTGAAAGAAGTGTTACGTTCCAAAC
TTCCAAGAGGGGCAATGCCAACAGCAAAGGATTGGAAACGTTTCATTGTC
GCGGTAACATCACTGTATAAATCGATCGAAGATAATCGCATCATTGGTAG
CACAACCACCCTGAGTGAACAATTGGAGGGGACGTTGTTTGTTGAGTCCA
TGTCCACGGACACTCAGGTCTGGCTGTACCGGGACGTTGAGAAGAAAAAT
CTGGTCGTGTCTTTCAGAGGAACTGAGCAAGTCAAATGGAGAGACTTCTT
TACAGATGCACAAACCTTCCTCCAAAGATGGGTTCCAGGAGAGGACATTG
ACTTAACAGTGAAGGTGGGACTCACTGTCGGGCTCGAGACTTTTGTACCA
AGCATACTTCCGACATCCAAGTTAGCTAATTCAATCCCTGACGATGCAAT
GGCTGTACATTATGGGTTTCTCAGGGCGTACTTTAGTGTGCAGAAGGTTT
TGCTCCGGTACATTTTATCACTAACTTCCAACCTGGAAGAAGATTACTCT
ATTTACTTCACTGGGCATTCTCTTGGAGGTGCACTTGCGATTGTAGCGGC
TGCAGACTTTTCTGCTCGGTACAACTTGGATAACGTGTGCTGCATGTCAT
ATGGAGCTCCAAAGGTTGGAAACATTAACTTTGCGAGACGATATAACGAA
CTTGTTCCGAACTCTTTTCGAATTGTGAATGATGAGGATCTTGTTTCTCG
TATGCCGCGTTCTGTGTCTGAAGGAAATGCTGTGAGTAAATACAAACATT
CGGGTAGGACTGTTCTCTTGAATGATGAAGGCGACTATTGGGTTGAAGGT
ATGGTCAGCTCTCCGTACCAGAATGGCAAATCTGTGTTTGATGTGCTTCA
TGAACGATGTGTTAATCTCTCAGATTTGCTGGAAATGGAACAACGTCTTT
GGGACAATCTGCTGTCAGGGAAATCGGTCCAGCATCATATGGAGAGCTCA
TATTTCGCGGCGATGCACCAGGTAGTGAGAAGGTATATAAAAGAGAACCT
CAGTTAG