Ggra5323.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5323.t1
Unique Name	Ggra5323.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	539

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:95138..96754 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272952.HpaP809748
PFAMs	CAF1C_H4-bd,WD40
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14848
Evalue	2.23e-82
EggNOG OGs	KOG0302@1\|root,KOG0302@2759\|Eukaryota,3Q7Z3@4776\|Peronosporales
Description	Histone-binding protein RBBP4 or subunit C of CAF1 complex
COG category	K
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5323	Ggra5323	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 95138..96754 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5323.t1.start1	Ggra5323.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 95138..95140 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5323.t1.CDS1	Ggra5323.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 95138..96754 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5323.t1.exon1	Ggra5323.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 95138..96754 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5323.t1.stop1	Ggra5323.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 96752..96754 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5323.t1	Ggra5323.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 95138..96754 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:95138..96754+
coding sequence from alignment at tig00000172_pilon:95138..96754+

mRNA sequence

>Ggra5323.t1 ID=Ggra5323.t1|Name=Ggra5323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=539bp
MSRSQLRASVAASGSDPQASPSGASRKRKAETELTKQQEEPDTETVFEDP
YGDEYEQEREGDDEQPRAQIKDPMMVNDAVVFRPGKDKVGAGEKLVYDQS
AYDQFHRFTMEWPSLSFDFVCSDASGEYSNLSPLLQQAYPMNTTLVLGTQ
ADANSKNKLVCLKVTNMHRTTRLRKGKPSAVKTVGADTDSSDESSDDEAD
DEHSGQDENSLSLPSRNPVLQSVDVKFDSVVNRVRTMPHHPNIVAAWSSS
GRFYITDVAPALDVLNLDSRRRMRAPNSISPSNIKPMYSFRGHGVEGYAL
DWSRVSEGHLLTGALNGSLYLTQPSSREGAAFTTSLDRYNGHRKPVEDIQ
WSPNEQNVFASCSSDKTIRIWDTRERRRNALAIEEAHDTDVNVISWNRNE
THLIASGGDEGLVRVWDMRSLTTAGDGGPKAAAEFNQHTEAITSVQWNPT
DSSMLSVSSEDGTVSVWDLAVERDAEEELREGVVLSGADEFPPQLLFIHM
GQKNVKEAQWHPACPSLLVSTAEDGLNLFQPSNITSPV*

spliced messenger RNA

>Ggra5323.t1 ID=Ggra5323.t1|Name=Ggra5323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000172_pilon:95138..96754+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGTTCGCAGCTGCGTGCGTCGGTGGCGGCGTCGGGCAGTGACCC
TCAGGCGTCGCCGTCGGGCGCGTCGCGCAAACGAAAGGCTGAGACTGAGC
TCACTAAACAGCAGGAGGAGCCGGATACTGAGACCGTGTTTGAGGATCCT
TACGGCGATGAGTATGAACAAGAGCGCGAGGGCGATGACGAGCAGCCGCG
CGCTCAGATTAAGGACCCCATGATGGTCAATGATGCTGTCGTGTTTCGAC
CAGGTAAGGATAAGGTTGGTGCTGGCGAGAAGCTTGTGTATGATCAAAGC
GCTTATGATCAGTTTCATCGCTTTACTATGGAGTGGCCTTCCCTTTCGTT
TGACTTTGTGTGTTCGGATGCCAGTGGCGAGTATAGTAACCTTTCACCAT
TGTTACAGCAAGCATATCCTATGAACACCACACTTGTTCTCGGCACTCAG
GCCGATGCCAATTCGAAAAACAAACTCGTTTGTCTCAAGGTCACCAACAT
GCATAGAACAACTCGCCTGCGAAAGGGAAAACCGAGCGCCGTCAAAACGG
TTGGCGCCGACACTGACTCTTCCGACGAATCTTCAGACGATGAAGCTGAT
GATGAACACAGCGGTCAAGATGAAAACAGCCTGTCTTTACCCAGCCGAAA
TCCGGTTCTACAGAGCGTTGACGTCAAGTTCGACTCCGTCGTCAACCGTG
TGCGCACAATGCCCCACCATCCGAACATTGTCGCTGCGTGGAGTTCCTCA
GGCCGCTTCTACATCACGGACGTGGCACCTGCGTTAGACGTTTTGAACCT
CGATAGTCGCCGAAGAATGAGAGCGCCCAATTCCATTTCCCCGTCCAACA
TCAAGCCCATGTACTCTTTCAGGGGCCATGGAGTTGAAGGTTACGCCTTG
GATTGGAGCCGCGTTTCTGAGGGGCATTTGCTCACCGGCGCTTTAAACGG
AAGTCTGTATTTGACTCAACCATCAAGTCGAGAAGGCGCCGCGTTCACTA
CTTCGCTGGATCGTTATAATGGCCACCGCAAGCCGGTCGAAGACATCCAA
TGGTCTCCCAATGAACAAAACGTTTTTGCTAGCTGCAGTTCAGATAAAAC
AATACGGATATGGGACACCCGGGAAAGAAGACGAAATGCTCTTGCTATCG
AAGAAGCACATGACACGGACGTCAACGTGATTTCCTGGAACAGGAACGAG
ACCCATTTGATAGCGAGTGGAGGGGATGAGGGTTTGGTCAGGGTCTGGGA
TATGCGATCTTTGACCACTGCTGGTGATGGGGGACCTAAAGCCGCCGCAG
AATTTAATCAGCACACGGAAGCAATTACATCCGTGCAATGGAACCCTACC
GACTCTTCTATGCTCTCCGTCAGTTCAGAAGATGGAACTGTATCAGTGTG
GGACCTTGCTGTCGAACGCGATGCAGAGGAAGAATTACGAGAAGGTGTGG
TGCTTTCTGGGGCGGACGAATTTCCGCCTCAGCTTCTTTTCATTCACATG
GGGCAGAAGAACGTCAAGGAAGCGCAGTGGCATCCGGCATGTCCCTCGCT
GCTCGTCAGTACCGCTGAGGATGGATTGAATTTGTTTCAACCCTCCAATA
TCACATCGCCAGTATGA

protein sequence of Ggra5323.t1

>Ggra5323.t1 ID=Ggra5323.t1|Name=Ggra5323.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=539bp
MSRSQLRASVAASGSDPQASPSGASRKRKAETELTKQQEEPDTETVFEDP
YGDEYEQEREGDDEQPRAQIKDPMMVNDAVVFRPGKDKVGAGEKLVYDQS
AYDQFHRFTMEWPSLSFDFVCSDASGEYSNLSPLLQQAYPMNTTLVLGTQ
ADANSKNKLVCLKVTNMHRTTRLRKGKPSAVKTVGADTDSSDESSDDEAD
DEHSGQDENSLSLPSRNPVLQSVDVKFDSVVNRVRTMPHHPNIVAAWSSS
GRFYITDVAPALDVLNLDSRRRMRAPNSISPSNIKPMYSFRGHGVEGYAL
DWSRVSEGHLLTGALNGSLYLTQPSSREGAAFTTSLDRYNGHRKPVEDIQ
WSPNEQNVFASCSSDKTIRIWDTRERRRNALAIEEAHDTDVNVISWNRNE
THLIASGGDEGLVRVWDMRSLTTAGDGGPKAAAEFNQHTEAITSVQWNPT
DSSMLSVSSEDGTVSVWDLAVERDAEEELREGVVLSGADEFPPQLLFIHM
GQKNVKEAQWHPACPSLLVSTAEDGLNLFQPSNITSPV*

mRNA from alignment at tig00000172_pilon:95138..96754+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5323.t1 ID=Ggra5323.t1|Name=Ggra5323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000172_pilon:95138..96754+ (Gracilaria gracilis GNS1m male)
ATGTCGCGTTCGCAGCTGCGTGCGTCGGTGGCGGCGTCGGGCAGTGACCC
TCAGGCGTCGCCGTCGGGCGCGTCGCGCAAACGAAAGGCTGAGACTGAGC
TCACTAAACAGCAGGAGGAGCCGGATACTGAGACCGTGTTTGAGGATCCT
TACGGCGATGAGTATGAACAAGAGCGCGAGGGCGATGACGAGCAGCCGCG
CGCTCAGATTAAGGACCCCATGATGGTCAATGATGCTGTCGTGTTTCGAC
CAGGTAAGGATAAGGTTGGTGCTGGCGAGAAGCTTGTGTATGATCAAAGC
GCTTATGATCAGTTTCATCGCTTTACTATGGAGTGGCCTTCCCTTTCGTT
TGACTTTGTGTGTTCGGATGCCAGTGGCGAGTATAGTAACCTTTCACCAT
TGTTACAGCAAGCATATCCTATGAACACCACACTTGTTCTCGGCACTCAG
GCCGATGCCAATTCGAAAAACAAACTCGTTTGTCTCAAGGTCACCAACAT
GCATAGAACAACTCGCCTGCGAAAGGGAAAACCGAGCGCCGTCAAAACGG
TTGGCGCCGACACTGACTCTTCCGACGAATCTTCAGACGATGAAGCTGAT
GATGAACACAGCGGTCAAGATGAAAACAGCCTGTCTTTACCCAGCCGAAA
TCCGGTTCTACAGAGCGTTGACGTCAAGTTCGACTCCGTCGTCAACCGTG
TGCGCACAATGCCCCACCATCCGAACATTGTCGCTGCGTGGAGTTCCTCA
GGCCGCTTCTACATCACGGACGTGGCACCTGCGTTAGACGTTTTGAACCT
CGATAGTCGCCGAAGAATGAGAGCGCCCAATTCCATTTCCCCGTCCAACA
TCAAGCCCATGTACTCTTTCAGGGGCCATGGAGTTGAAGGTTACGCCTTG
GATTGGAGCCGCGTTTCTGAGGGGCATTTGCTCACCGGCGCTTTAAACGG
AAGTCTGTATTTGACTCAACCATCAAGTCGAGAAGGCGCCGCGTTCACTA
CTTCGCTGGATCGTTATAATGGCCACCGCAAGCCGGTCGAAGACATCCAA
TGGTCTCCCAATGAACAAAACGTTTTTGCTAGCTGCAGTTCAGATAAAAC
AATACGGATATGGGACACCCGGGAAAGAAGACGAAATGCTCTTGCTATCG
AAGAAGCACATGACACGGACGTCAACGTGATTTCCTGGAACAGGAACGAG
ACCCATTTGATAGCGAGTGGAGGGGATGAGGGTTTGGTCAGGGTCTGGGA
TATGCGATCTTTGACCACTGCTGGTGATGGGGGACCTAAAGCCGCCGCAG
AATTTAATCAGCACACGGAAGCAATTACATCCGTGCAATGGAACCCTACC
GACTCTTCTATGCTCTCCGTCAGTTCAGAAGATGGAACTGTATCAGTGTG
GGACCTTGCTGTCGAACGCGATGCAGAGGAAGAATTACGAGAAGGTGTGG
TGCTTTCTGGGGCGGACGAATTTCCGCCTCAGCTTCTTTTCATTCACATG
GGGCAGAAGAACGTCAAGGAAGCGCAGTGGCATCCGGCATGTCCCTCGCT
GCTCGTCAGTACCGCTGAGGATGGATTGAATTTGTTTCAACCCTCCAATA
TCACATCGCCAGTATGA

Coding sequence (CDS) from alignment at tig00000172_pilon:95138..96754+

>Ggra5323.t1 ID=Ggra5323.t1|Name=Ggra5323.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00000172_pilon:95138..96754+ (Gracilaria gracilis GNS1m male)
ATGTCGCGTTCGCAGCTGCGTGCGTCGGTGGCGGCGTCGGGCAGTGACCC
TCAGGCGTCGCCGTCGGGCGCGTCGCGCAAACGAAAGGCTGAGACTGAGC
TCACTAAACAGCAGGAGGAGCCGGATACTGAGACCGTGTTTGAGGATCCT
TACGGCGATGAGTATGAACAAGAGCGCGAGGGCGATGACGAGCAGCCGCG
CGCTCAGATTAAGGACCCCATGATGGTCAATGATGCTGTCGTGTTTCGAC
CAGGTAAGGATAAGGTTGGTGCTGGCGAGAAGCTTGTGTATGATCAAAGC
GCTTATGATCAGTTTCATCGCTTTACTATGGAGTGGCCTTCCCTTTCGTT
TGACTTTGTGTGTTCGGATGCCAGTGGCGAGTATAGTAACCTTTCACCAT
TGTTACAGCAAGCATATCCTATGAACACCACACTTGTTCTCGGCACTCAG
GCCGATGCCAATTCGAAAAACAAACTCGTTTGTCTCAAGGTCACCAACAT
GCATAGAACAACTCGCCTGCGAAAGGGAAAACCGAGCGCCGTCAAAACGG
TTGGCGCCGACACTGACTCTTCCGACGAATCTTCAGACGATGAAGCTGAT
GATGAACACAGCGGTCAAGATGAAAACAGCCTGTCTTTACCCAGCCGAAA
TCCGGTTCTACAGAGCGTTGACGTCAAGTTCGACTCCGTCGTCAACCGTG
TGCGCACAATGCCCCACCATCCGAACATTGTCGCTGCGTGGAGTTCCTCA
GGCCGCTTCTACATCACGGACGTGGCACCTGCGTTAGACGTTTTGAACCT
CGATAGTCGCCGAAGAATGAGAGCGCCCAATTCCATTTCCCCGTCCAACA
TCAAGCCCATGTACTCTTTCAGGGGCCATGGAGTTGAAGGTTACGCCTTG
GATTGGAGCCGCGTTTCTGAGGGGCATTTGCTCACCGGCGCTTTAAACGG
AAGTCTGTATTTGACTCAACCATCAAGTCGAGAAGGCGCCGCGTTCACTA
CTTCGCTGGATCGTTATAATGGCCACCGCAAGCCGGTCGAAGACATCCAA
TGGTCTCCCAATGAACAAAACGTTTTTGCTAGCTGCAGTTCAGATAAAAC
AATACGGATATGGGACACCCGGGAAAGAAGACGAAATGCTCTTGCTATCG
AAGAAGCACATGACACGGACGTCAACGTGATTTCCTGGAACAGGAACGAG
ACCCATTTGATAGCGAGTGGAGGGGATGAGGGTTTGGTCAGGGTCTGGGA
TATGCGATCTTTGACCACTGCTGGTGATGGGGGACCTAAAGCCGCCGCAG
AATTTAATCAGCACACGGAAGCAATTACATCCGTGCAATGGAACCCTACC
GACTCTTCTATGCTCTCCGTCAGTTCAGAAGATGGAACTGTATCAGTGTG
GGACCTTGCTGTCGAACGCGATGCAGAGGAAGAATTACGAGAAGGTGTGG
TGCTTTCTGGGGCGGACGAATTTCCGCCTCAGCTTCTTTTCATTCACATG
GGGCAGAAGAACGTCAAGGAAGCGCAGTGGCATCCGGCATGTCCCTCGCT
GCTCGTCAGTACCGCTGAGGATGGATTGAATTTGTTTCAACCCTCCAATA
TCACATCGCCAGTATGA