Ggra5322.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5322.t1
Unique NameGgra5322.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length409
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:93431..94657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708374.1
PFAMsACT_6,HAD
Max annot lvl2759|Eukaryota
Evalue4.28e-67
EggNOG OGsCOG0560@1|root,KOG1615@2759|Eukaryota
Descriptionphosphoserine phosphatase activity
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5322Ggra5322Gracilaria gracilis GNS1m malegenetig00000172_pilon 93431..94657 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5322.t1.stop1Ggra5322.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 93431..93433 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5322.t1.CDS1Ggra5322.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 93431..94657 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5322.t1.exon1Ggra5322.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 93431..94657 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5322.t1.start1Ggra5322.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 94655..94657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5322.t1Ggra5322.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 93431..94657 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5322.t1 ID=Ggra5322.t1|Name=Ggra5322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=409bp
MANPQNVIVTLCGKQSPGALASVMHVLSTEDSELLDFGQLVVRNRFIATA
LISAKGAHDTVKEILFRAHKAQIQVHFNVPRGQADLSTSSVSSVSSVKDQ
YILTVFSPGFIPPRLLAKVTQLLLESDANIISIDRLTEEADTYMCLQFTM
TVADELVIPQLQRHLFELGRTEFQCDLALHKGNISRKAKRMVVFDLSWTL
VQCDSINVLLHAADVDVPKEEEQKFRSGQISGSEWVRFRVQLLKGFDAHT
VNSKAVQSLVYTNGAVQLCKGLKRLGCKLAIVSSGSKDIAMAAKEALHLD
FVFGNVIEIDSAGRFTGTLKEPVVDAQRKADLIAMLAMQERIDTEQVIAV
GDGPVSAKMLESVGMSIAFDQPDALDSVHSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*
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spliced messenger RNA

>Ggra5322.t1 ID=Ggra5322.t1|Name=Ggra5322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000172_pilon:93431..94657- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACCCGCAGAACGTCATCGTCACCCTGTGCGGAAAGCAGTCGCC
GGGCGCGCTTGCGTCCGTTATGCACGTGCTCTCGACTGAAGACTCCGAGC
TGCTCGACTTTGGTCAGCTCGTCGTGCGCAATCGTTTCATCGCCACGGCT
CTCATCTCCGCGAAGGGCGCCCATGACACCGTCAAGGAAATCCTCTTTCG
CGCGCACAAGGCCCAGATCCAAGTTCACTTCAACGTGCCCCGCGGCCAGG
CCGATCTCTCCACTTCGTCCGTGTCATCTGTCTCTAGTGTCAAAGACCAG
TACATCCTCACGGTGTTTTCTCCTGGCTTCATTCCTCCGAGGCTGCTTGC
CAAAGTTACTCAGCTTTTGCTTGAGAGCGATGCCAATATCATCTCTATCG
ACCGTCTCACCGAGGAGGCTGATACATATATGTGCTTGCAATTTACCATG
ACCGTTGCGGACGAGCTGGTTATACCACAGCTTCAACGTCACCTTTTTGA
GCTTGGCCGAACTGAGTTTCAATGTGACCTTGCCTTGCATAAGGGAAACA
TATCTCGCAAGGCCAAGAGAATGGTTGTCTTTGATCTCAGCTGGACGCTT
GTTCAATGCGATTCCATTAACGTCTTGCTGCACGCAGCCGATGTAGATGT
ACCGAAAGAGGAGGAGCAAAAATTCCGTAGCGGACAAATCAGCGGTTCGG
AGTGGGTACGCTTCAGAGTGCAGTTGCTTAAAGGGTTCGATGCGCACACC
GTGAACAGCAAAGCCGTTCAAAGTTTGGTTTACACAAACGGCGCTGTTCA
ACTGTGCAAGGGTTTGAAACGCCTGGGATGCAAGCTTGCAATTGTGTCCT
CCGGTTCCAAAGACATTGCTATGGCTGCAAAGGAAGCTCTTCACCTGGAC
TTTGTGTTTGGAAATGTTATTGAAATTGATTCCGCGGGAAGGTTCACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGGAAAGCTGATCTGATTG
CAATGTTAGCCATGCAAGAACGTATTGACACCGAACAGGTCATTGCTGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAGAGCGTCGGTATGAGCAT
CGCCTTTGATCAACCTGATGCGCTGGATTCCGTCCATAGTGGCAGAATTG
GTAGCAAGAGTCTTGCAAGCGTTCTGTACTTGCTCGGTGTTTCAGGACAT
GATTTCCGCACAGTTACGGCAAGCTAG
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protein sequence of Ggra5322.t1

>Ggra5322.t1 ID=Ggra5322.t1|Name=Ggra5322.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=409bp
MANPQNVIVTLCGKQSPGALASVMHVLSTEDSELLDFGQLVVRNRFIATA
LISAKGAHDTVKEILFRAHKAQIQVHFNVPRGQADLSTSSVSSVSSVKDQ
YILTVFSPGFIPPRLLAKVTQLLLESDANIISIDRLTEEADTYMCLQFTM
TVADELVIPQLQRHLFELGRTEFQCDLALHKGNISRKAKRMVVFDLSWTL
VQCDSINVLLHAADVDVPKEEEQKFRSGQISGSEWVRFRVQLLKGFDAHT
VNSKAVQSLVYTNGAVQLCKGLKRLGCKLAIVSSGSKDIAMAAKEALHLD
FVFGNVIEIDSAGRFTGTLKEPVVDAQRKADLIAMLAMQERIDTEQVIAV
GDGPVSAKMLESVGMSIAFDQPDALDSVHSGRIGSKSLASVLYLLGVSGH
DFRTVTAS*
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mRNA from alignment at tig00000172_pilon:93431..94657-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5322.t1 ID=Ggra5322.t1|Name=Ggra5322.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1227bp|location=Sequence derived from alignment at tig00000172_pilon:93431..94657- (Gracilaria gracilis GNS1m male)
ATGGCCAACCCGCAGAACGTCATCGTCACCCTGTGCGGAAAGCAGTCGCC
GGGCGCGCTTGCGTCCGTTATGCACGTGCTCTCGACTGAAGACTCCGAGC
TGCTCGACTTTGGTCAGCTCGTCGTGCGCAATCGTTTCATCGCCACGGCT
CTCATCTCCGCGAAGGGCGCCCATGACACCGTCAAGGAAATCCTCTTTCG
CGCGCACAAGGCCCAGATCCAAGTTCACTTCAACGTGCCCCGCGGCCAGG
CCGATCTCTCCACTTCGTCCGTGTCATCTGTCTCTAGTGTCAAAGACCAG
TACATCCTCACGGTGTTTTCTCCTGGCTTCATTCCTCCGAGGCTGCTTGC
CAAAGTTACTCAGCTTTTGCTTGAGAGCGATGCCAATATCATCTCTATCG
ACCGTCTCACCGAGGAGGCTGATACATATATGTGCTTGCAATTTACCATG
ACCGTTGCGGACGAGCTGGTTATACCACAGCTTCAACGTCACCTTTTTGA
GCTTGGCCGAACTGAGTTTCAATGTGACCTTGCCTTGCATAAGGGAAACA
TATCTCGCAAGGCCAAGAGAATGGTTGTCTTTGATCTCAGCTGGACGCTT
GTTCAATGCGATTCCATTAACGTCTTGCTGCACGCAGCCGATGTAGATGT
ACCGAAAGAGGAGGAGCAAAAATTCCGTAGCGGACAAATCAGCGGTTCGG
AGTGGGTACGCTTCAGAGTGCAGTTGCTTAAAGGGTTCGATGCGCACACC
GTGAACAGCAAAGCCGTTCAAAGTTTGGTTTACACAAACGGCGCTGTTCA
ACTGTGCAAGGGTTTGAAACGCCTGGGATGCAAGCTTGCAATTGTGTCCT
CCGGTTCCAAAGACATTGCTATGGCTGCAAAGGAAGCTCTTCACCTGGAC
TTTGTGTTTGGAAATGTTATTGAAATTGATTCCGCGGGAAGGTTCACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGGAAAGCTGATCTGATTG
CAATGTTAGCCATGCAAGAACGTATTGACACCGAACAGGTCATTGCTGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAGAGCGTCGGTATGAGCAT
CGCCTTTGATCAACCTGATGCGCTGGATTCCGTCCATAGTGGCAGAATTG
GTAGCAAGAGTCTTGCAAGCGTTCTGTACTTGCTCGGTGTTTCAGGACAT
GATTTCCGCACAGTTACGGCAAGCTAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:93431..94657-

>Ggra5322.t1 ID=Ggra5322.t1|Name=Ggra5322.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1227bp|location=Sequence derived from alignment at tig00000172_pilon:93431..94657- (Gracilaria gracilis GNS1m male)
ATGGCCAACCCGCAGAACGTCATCGTCACCCTGTGCGGAAAGCAGTCGCC
GGGCGCGCTTGCGTCCGTTATGCACGTGCTCTCGACTGAAGACTCCGAGC
TGCTCGACTTTGGTCAGCTCGTCGTGCGCAATCGTTTCATCGCCACGGCT
CTCATCTCCGCGAAGGGCGCCCATGACACCGTCAAGGAAATCCTCTTTCG
CGCGCACAAGGCCCAGATCCAAGTTCACTTCAACGTGCCCCGCGGCCAGG
CCGATCTCTCCACTTCGTCCGTGTCATCTGTCTCTAGTGTCAAAGACCAG
TACATCCTCACGGTGTTTTCTCCTGGCTTCATTCCTCCGAGGCTGCTTGC
CAAAGTTACTCAGCTTTTGCTTGAGAGCGATGCCAATATCATCTCTATCG
ACCGTCTCACCGAGGAGGCTGATACATATATGTGCTTGCAATTTACCATG
ACCGTTGCGGACGAGCTGGTTATACCACAGCTTCAACGTCACCTTTTTGA
GCTTGGCCGAACTGAGTTTCAATGTGACCTTGCCTTGCATAAGGGAAACA
TATCTCGCAAGGCCAAGAGAATGGTTGTCTTTGATCTCAGCTGGACGCTT
GTTCAATGCGATTCCATTAACGTCTTGCTGCACGCAGCCGATGTAGATGT
ACCGAAAGAGGAGGAGCAAAAATTCCGTAGCGGACAAATCAGCGGTTCGG
AGTGGGTACGCTTCAGAGTGCAGTTGCTTAAAGGGTTCGATGCGCACACC
GTGAACAGCAAAGCCGTTCAAAGTTTGGTTTACACAAACGGCGCTGTTCA
ACTGTGCAAGGGTTTGAAACGCCTGGGATGCAAGCTTGCAATTGTGTCCT
CCGGTTCCAAAGACATTGCTATGGCTGCAAAGGAAGCTCTTCACCTGGAC
TTTGTGTTTGGAAATGTTATTGAAATTGATTCCGCGGGAAGGTTCACTGG
CACTCTCAAGGAACCTGTTGTTGATGCTCAGCGGAAAGCTGATCTGATTG
CAATGTTAGCCATGCAAGAACGTATTGACACCGAACAGGTCATTGCTGTG
GGCGACGGTCCGGTGAGTGCGAAGATGCTCGAGAGCGTCGGTATGAGCAT
CGCCTTTGATCAACCTGATGCGCTGGATTCCGTCCATAGTGGCAGAATTG
GTAGCAAGAGTCTTGCAAGCGTTCTGTACTTGCTCGGTGTTTCAGGACAT
GATTTCCGCACAGTTACGGCAAGCTAG
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