Ggra5321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5321.t1
Unique NameGgra5321.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length653
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000172_piloncontigtig00000172_pilon:19773..21826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_07461T0
PFAMsABC2_membrane,ABC_tran
Max annot lvl33154|Opisthokonta
Evalue5.12e-189
EggNOG OGsCOG1131@1|root,KOG0061@2759|Eukaryota,38CVQ@33154|Opisthokonta
DescriptionATPase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5321Ggra5321Gracilaria gracilis GNS1m malegenetig00000172_pilon 19773..21826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1Ggra5321.t1Gracilaria gracilis GNS1m malepolypeptidetig00000172_pilon 19773..21826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1.stop1Ggra5321.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000172_pilon 19773..19775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1.CDS1Ggra5321.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000172_pilon 19773..21713 -
Ggra5321.t1.CDS2Ggra5321.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000172_pilon 21809..21826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1.exon1Ggra5321.t1.exon1Gracilaria gracilis GNS1m maleexontig00000172_pilon 19773..21713 -
Ggra5321.t1.exon2Ggra5321.t1.exon2Gracilaria gracilis GNS1m maleexontig00000172_pilon 21809..21826 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1.intron1Ggra5321.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000172_pilon 21714..21808 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5321.t1.start1Ggra5321.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000172_pilon 21824..21826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5321.t1 ID=Ggra5321.t1|Name=Ggra5321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=653bp
MDPVQTVVYNSVDVTYDPNEPLNFDGELSASARQAERVDLVWKDLTFTVP
VKPTKTPKSDAPAQQLDGAHVSSREKLILKSMSGEARAGTMLAVMGSSGA
GKTSLLNLLAGRVSSSKGAKATGAVFLNGEPRNYNKFRKLAAYVIQDDDM
FAELTVQEQLTYAALLRLPASMSRERKLMRVHKVIQELGLGKVKHTMIGN
QIVRGISGGERKRVNIGTELVTNPSLLFLDEPTTGLDSFNALNVMTALRQ
LASNGRTIISTIHQPRSSIFALFDQLCLLSEGRVMYFGPASEAVDYFSAL
NFRSPSQFNPADFFLDLLSVDPRSAEREASTQARISYLGDMYSKQAKPIA
IEATPDAEAGSAGDGDSVEKVPFKEGMYQTSWVNEFSVLCTRAMKLAFRE
RAANGVRFGQVLFFSILLGLIWLNNGRQEAVEKRQSLVGILFFISINQAF
GGVFAVIFGFPLERSIVTRERASNMYRTSSYFLSKTVTDLPRSLLFNSLF
SVIVYWMVGLKPEAGAFFIFVLVIFLTTVLAESLSIAVSIMAGDAQTAAG
IIPVFVILALLFGGFFIGSEQLGDWIAWAKYLSFIYYSFNALGHNEFTGR
VGADEILANFNSLSIAENIVCLFALMVALRFIGYLFLKFLRGPKFLKLEG
ER*
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spliced messenger RNA

>Ggra5321.t1 ID=Ggra5321.t1|Name=Ggra5321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1959bp|location=Sequence derived from alignment at tig00000172_pilon:19773..21826- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCGTCCAAACCGTTGTGTACAACAGCGTCGACGTCACCTACGA
CCCCAACGAACCGCTGAACTTTGACGGCGAATTGAGTGCGTCCGCGCGCC
AGGCCGAGCGCGTCGACCTGGTATGGAAGGACCTCACATTCACCGTCCCC
GTCAAGCCCACCAAGACGCCCAAGTCCGACGCGCCCGCACAACAACTGGA
CGGCGCGCACGTGTCGTCGCGCGAGAAGCTCATCCTCAAGTCCATGTCCG
GCGAGGCGCGCGCCGGCACCATGCTCGCCGTCATGGGCAGCTCGGGCGCG
GGAAAGACCAGTCTGCTCAACCTGCTCGCCGGCCGCGTCAGCAGCAGCAA
GGGCGCCAAGGCCACCGGCGCCGTGTTCCTCAACGGCGAGCCGCGCAACT
ACAACAAGTTCAGAAAGCTTGCCGCGTACGTCATCCAGGACGACGACATG
TTCGCAGAGCTCACCGTGCAGGAGCAGCTCACGTACGCCGCGCTGCTGCG
CCTGCCGGCCTCCATGAGCCGCGAGAGGAAGCTCATGCGCGTGCACAAAG
TGATTCAGGAGCTGGGGCTCGGCAAGGTGAAGCACACCATGATTGGCAAC
CAGATCGTGCGCGGCATCAGCGGCGGTGAGCGCAAGCGAGTCAACATTGG
CACTGAACTGGTCACCAACCCGTCGCTGCTGTTCCTGGATGAGCCTACCA
CCGGGCTGGACAGTTTCAACGCGCTCAACGTAATGACGGCGCTGCGTCAA
CTGGCAAGTAATGGGCGCACAATCATTTCCACCATTCATCAGCCGCGTTC
CAGCATCTTTGCGTTGTTCGACCAGCTGTGCTTGCTTTCGGAGGGGCGTG
TGATGTACTTTGGGCCGGCCAGCGAGGCGGTGGACTACTTTTCCGCTCTC
AACTTCAGGTCGCCGTCTCAGTTCAACCCCGCCGATTTCTTCCTCGACCT
ACTGAGCGTGGATCCACGTTCCGCGGAGCGCGAGGCGAGCACACAGGCGC
GCATCTCGTACCTGGGCGATATGTACTCCAAGCAGGCCAAGCCGATTGCA
ATTGAGGCCACGCCGGATGCGGAAGCGGGCAGTGCGGGTGACGGCGATTC
GGTGGAGAAGGTGCCGTTCAAGGAAGGCATGTATCAGACGAGCTGGGTGA
ACGAATTCAGCGTGCTGTGTACGCGCGCGATGAAGCTGGCGTTCCGCGAG
CGCGCGGCGAACGGGGTGCGGTTTGGACAGGTGTTGTTCTTCAGCATTCT
GTTGGGATTGATTTGGCTGAATAACGGGCGCCAAGAGGCGGTGGAGAAGC
GACAGTCTCTGGTGGGTATTCTGTTCTTCATTTCGATCAACCAGGCGTTT
GGTGGGGTGTTTGCGGTGATCTTTGGGTTTCCGCTGGAGCGCAGCATTGT
GACGAGGGAACGGGCGTCAAATATGTACCGCACGAGCTCGTACTTTCTGA
GCAAGACGGTGACGGATTTGCCTCGGTCGCTGCTGTTCAACTCGCTGTTT
TCGGTGATTGTTTACTGGATGGTGGGGTTGAAGCCGGAGGCCGGAGCGTT
TTTCATCTTCGTGCTGGTGATCTTCTTGACGACGGTGCTGGCGGAATCGC
TGTCCATCGCGGTGTCGATCATGGCTGGCGACGCGCAGACGGCGGCGGGC
ATCATCCCGGTGTTTGTGATCCTGGCGCTGCTGTTTGGTGGGTTTTTCAT
CGGCAGCGAACAGCTGGGCGACTGGATTGCGTGGGCCAAGTACCTGTCGT
TCATCTACTACTCGTTCAATGCGTTGGGGCACAACGAGTTCACGGGGCGT
GTGGGCGCGGATGAGATTCTTGCCAACTTCAACAGCCTGAGCATCGCGGA
GAACATTGTGTGCCTGTTTGCGCTCATGGTGGCGCTGCGCTTCATCGGGT
ACCTGTTCCTCAAGTTTCTGCGCGGACCCAAGTTCCTCAAGCTGGAGGGC
GAGCGCTAG
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protein sequence of Ggra5321.t1

>Ggra5321.t1 ID=Ggra5321.t1|Name=Ggra5321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=653bp
MDPVQTVVYNSVDVTYDPNEPLNFDGELSASARQAERVDLVWKDLTFTVP
VKPTKTPKSDAPAQQLDGAHVSSREKLILKSMSGEARAGTMLAVMGSSGA
GKTSLLNLLAGRVSSSKGAKATGAVFLNGEPRNYNKFRKLAAYVIQDDDM
FAELTVQEQLTYAALLRLPASMSRERKLMRVHKVIQELGLGKVKHTMIGN
QIVRGISGGERKRVNIGTELVTNPSLLFLDEPTTGLDSFNALNVMTALRQ
LASNGRTIISTIHQPRSSIFALFDQLCLLSEGRVMYFGPASEAVDYFSAL
NFRSPSQFNPADFFLDLLSVDPRSAEREASTQARISYLGDMYSKQAKPIA
IEATPDAEAGSAGDGDSVEKVPFKEGMYQTSWVNEFSVLCTRAMKLAFRE
RAANGVRFGQVLFFSILLGLIWLNNGRQEAVEKRQSLVGILFFISINQAF
GGVFAVIFGFPLERSIVTRERASNMYRTSSYFLSKTVTDLPRSLLFNSLF
SVIVYWMVGLKPEAGAFFIFVLVIFLTTVLAESLSIAVSIMAGDAQTAAG
IIPVFVILALLFGGFFIGSEQLGDWIAWAKYLSFIYYSFNALGHNEFTGR
VGADEILANFNSLSIAENIVCLFALMVALRFIGYLFLKFLRGPKFLKLEG
ER*
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mRNA from alignment at tig00000172_pilon:19773..21826-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5321.t1 ID=Ggra5321.t1|Name=Ggra5321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2054bp|location=Sequence derived from alignment at tig00000172_pilon:19773..21826- (Gracilaria gracilis GNS1m male)
ATGGACCCCGTCCAAACCGTAAGTGCCTTCAACATCATTCCGCCCCTTTG
CATCATTCCGCCCCTTTGCGCTCCTCCTGCAATTCACTTCTAACTGCATC
GCCCCCCGCCAAGGTTGTGTACAACAGCGTCGACGTCACCTACGACCCCA
ACGAACCGCTGAACTTTGACGGCGAATTGAGTGCGTCCGCGCGCCAGGCC
GAGCGCGTCGACCTGGTATGGAAGGACCTCACATTCACCGTCCCCGTCAA
GCCCACCAAGACGCCCAAGTCCGACGCGCCCGCACAACAACTGGACGGCG
CGCACGTGTCGTCGCGCGAGAAGCTCATCCTCAAGTCCATGTCCGGCGAG
GCGCGCGCCGGCACCATGCTCGCCGTCATGGGCAGCTCGGGCGCGGGAAA
GACCAGTCTGCTCAACCTGCTCGCCGGCCGCGTCAGCAGCAGCAAGGGCG
CCAAGGCCACCGGCGCCGTGTTCCTCAACGGCGAGCCGCGCAACTACAAC
AAGTTCAGAAAGCTTGCCGCGTACGTCATCCAGGACGACGACATGTTCGC
AGAGCTCACCGTGCAGGAGCAGCTCACGTACGCCGCGCTGCTGCGCCTGC
CGGCCTCCATGAGCCGCGAGAGGAAGCTCATGCGCGTGCACAAAGTGATT
CAGGAGCTGGGGCTCGGCAAGGTGAAGCACACCATGATTGGCAACCAGAT
CGTGCGCGGCATCAGCGGCGGTGAGCGCAAGCGAGTCAACATTGGCACTG
AACTGGTCACCAACCCGTCGCTGCTGTTCCTGGATGAGCCTACCACCGGG
CTGGACAGTTTCAACGCGCTCAACGTAATGACGGCGCTGCGTCAACTGGC
AAGTAATGGGCGCACAATCATTTCCACCATTCATCAGCCGCGTTCCAGCA
TCTTTGCGTTGTTCGACCAGCTGTGCTTGCTTTCGGAGGGGCGTGTGATG
TACTTTGGGCCGGCCAGCGAGGCGGTGGACTACTTTTCCGCTCTCAACTT
CAGGTCGCCGTCTCAGTTCAACCCCGCCGATTTCTTCCTCGACCTACTGA
GCGTGGATCCACGTTCCGCGGAGCGCGAGGCGAGCACACAGGCGCGCATC
TCGTACCTGGGCGATATGTACTCCAAGCAGGCCAAGCCGATTGCAATTGA
GGCCACGCCGGATGCGGAAGCGGGCAGTGCGGGTGACGGCGATTCGGTGG
AGAAGGTGCCGTTCAAGGAAGGCATGTATCAGACGAGCTGGGTGAACGAA
TTCAGCGTGCTGTGTACGCGCGCGATGAAGCTGGCGTTCCGCGAGCGCGC
GGCGAACGGGGTGCGGTTTGGACAGGTGTTGTTCTTCAGCATTCTGTTGG
GATTGATTTGGCTGAATAACGGGCGCCAAGAGGCGGTGGAGAAGCGACAG
TCTCTGGTGGGTATTCTGTTCTTCATTTCGATCAACCAGGCGTTTGGTGG
GGTGTTTGCGGTGATCTTTGGGTTTCCGCTGGAGCGCAGCATTGTGACGA
GGGAACGGGCGTCAAATATGTACCGCACGAGCTCGTACTTTCTGAGCAAG
ACGGTGACGGATTTGCCTCGGTCGCTGCTGTTCAACTCGCTGTTTTCGGT
GATTGTTTACTGGATGGTGGGGTTGAAGCCGGAGGCCGGAGCGTTTTTCA
TCTTCGTGCTGGTGATCTTCTTGACGACGGTGCTGGCGGAATCGCTGTCC
ATCGCGGTGTCGATCATGGCTGGCGACGCGCAGACGGCGGCGGGCATCAT
CCCGGTGTTTGTGATCCTGGCGCTGCTGTTTGGTGGGTTTTTCATCGGCA
GCGAACAGCTGGGCGACTGGATTGCGTGGGCCAAGTACCTGTCGTTCATC
TACTACTCGTTCAATGCGTTGGGGCACAACGAGTTCACGGGGCGTGTGGG
CGCGGATGAGATTCTTGCCAACTTCAACAGCCTGAGCATCGCGGAGAACA
TTGTGTGCCTGTTTGCGCTCATGGTGGCGCTGCGCTTCATCGGGTACCTG
TTCCTCAAGTTTCTGCGCGGACCCAAGTTCCTCAAGCTGGAGGGCGAGCG
CTAG
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Coding sequence (CDS) from alignment at tig00000172_pilon:19773..21826-

>Ggra5321.t1 ID=Ggra5321.t1|Name=Ggra5321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1959bp|location=Sequence derived from alignment at tig00000172_pilon:19773..21826- (Gracilaria gracilis GNS1m male)
ATGGACCCCGTCCAAACCGTTGTGTACAACAGCGTCGACGTCACCTACGA
CCCCAACGAACCGCTGAACTTTGACGGCGAATTGAGTGCGTCCGCGCGCC
AGGCCGAGCGCGTCGACCTGGTATGGAAGGACCTCACATTCACCGTCCCC
GTCAAGCCCACCAAGACGCCCAAGTCCGACGCGCCCGCACAACAACTGGA
CGGCGCGCACGTGTCGTCGCGCGAGAAGCTCATCCTCAAGTCCATGTCCG
GCGAGGCGCGCGCCGGCACCATGCTCGCCGTCATGGGCAGCTCGGGCGCG
GGAAAGACCAGTCTGCTCAACCTGCTCGCCGGCCGCGTCAGCAGCAGCAA
GGGCGCCAAGGCCACCGGCGCCGTGTTCCTCAACGGCGAGCCGCGCAACT
ACAACAAGTTCAGAAAGCTTGCCGCGTACGTCATCCAGGACGACGACATG
TTCGCAGAGCTCACCGTGCAGGAGCAGCTCACGTACGCCGCGCTGCTGCG
CCTGCCGGCCTCCATGAGCCGCGAGAGGAAGCTCATGCGCGTGCACAAAG
TGATTCAGGAGCTGGGGCTCGGCAAGGTGAAGCACACCATGATTGGCAAC
CAGATCGTGCGCGGCATCAGCGGCGGTGAGCGCAAGCGAGTCAACATTGG
CACTGAACTGGTCACCAACCCGTCGCTGCTGTTCCTGGATGAGCCTACCA
CCGGGCTGGACAGTTTCAACGCGCTCAACGTAATGACGGCGCTGCGTCAA
CTGGCAAGTAATGGGCGCACAATCATTTCCACCATTCATCAGCCGCGTTC
CAGCATCTTTGCGTTGTTCGACCAGCTGTGCTTGCTTTCGGAGGGGCGTG
TGATGTACTTTGGGCCGGCCAGCGAGGCGGTGGACTACTTTTCCGCTCTC
AACTTCAGGTCGCCGTCTCAGTTCAACCCCGCCGATTTCTTCCTCGACCT
ACTGAGCGTGGATCCACGTTCCGCGGAGCGCGAGGCGAGCACACAGGCGC
GCATCTCGTACCTGGGCGATATGTACTCCAAGCAGGCCAAGCCGATTGCA
ATTGAGGCCACGCCGGATGCGGAAGCGGGCAGTGCGGGTGACGGCGATTC
GGTGGAGAAGGTGCCGTTCAAGGAAGGCATGTATCAGACGAGCTGGGTGA
ACGAATTCAGCGTGCTGTGTACGCGCGCGATGAAGCTGGCGTTCCGCGAG
CGCGCGGCGAACGGGGTGCGGTTTGGACAGGTGTTGTTCTTCAGCATTCT
GTTGGGATTGATTTGGCTGAATAACGGGCGCCAAGAGGCGGTGGAGAAGC
GACAGTCTCTGGTGGGTATTCTGTTCTTCATTTCGATCAACCAGGCGTTT
GGTGGGGTGTTTGCGGTGATCTTTGGGTTTCCGCTGGAGCGCAGCATTGT
GACGAGGGAACGGGCGTCAAATATGTACCGCACGAGCTCGTACTTTCTGA
GCAAGACGGTGACGGATTTGCCTCGGTCGCTGCTGTTCAACTCGCTGTTT
TCGGTGATTGTTTACTGGATGGTGGGGTTGAAGCCGGAGGCCGGAGCGTT
TTTCATCTTCGTGCTGGTGATCTTCTTGACGACGGTGCTGGCGGAATCGC
TGTCCATCGCGGTGTCGATCATGGCTGGCGACGCGCAGACGGCGGCGGGC
ATCATCCCGGTGTTTGTGATCCTGGCGCTGCTGTTTGGTGGGTTTTTCAT
CGGCAGCGAACAGCTGGGCGACTGGATTGCGTGGGCCAAGTACCTGTCGT
TCATCTACTACTCGTTCAATGCGTTGGGGCACAACGAGTTCACGGGGCGT
GTGGGCGCGGATGAGATTCTTGCCAACTTCAACAGCCTGAGCATCGCGGA
GAACATTGTGTGCCTGTTTGCGCTCATGGTGGCGCTGCGCTTCATCGGGT
ACCTGTTCCTCAAGTTTCTGCGCGGACCCAAGTTCCTCAAGCTGGAGGGC
GAGCGCTAG
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