Ggra5299.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5299.t1
Unique NameGgra5299.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length516
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:267909..269456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog232348.ADXL01000034_gene1377
Preferred nameaccC
PFAMsBiotin_carb_C,Biotin_carb_N,CPSase_L_D2
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K01961
KEGG ReactionR00742,R04385
KEGG Pathwayko00061,ko00620,ko00640,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00640,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG ModuleM00082,M00376
Evalue1.74e-209
EggNOG OGsCOG0439@1|root,COG0439@2|Bacteria,1G1M0@1117|Cyanobacteria,1GYGC@1129|Synechococcus
EC6.3.4.14,6.4.1.2
DescriptionBiotin carboxylase
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5299Ggra5299Gracilaria gracilis GNS1m malegenetig00000082_pilon 267909..269456 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5299.t1.start1Ggra5299.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 267909..267911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5299.t1.CDS1Ggra5299.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 267909..269456 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5299.t1.exon1Ggra5299.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 267909..269456 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5299.t1.stop1Ggra5299.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 269454..269456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5299.t1Ggra5299.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 267909..269456 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5299.t1 ID=Ggra5299.t1|Name=Ggra5299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=516bp
MPPAFVAPLPLTAKSPSAFSSAPTHRPAYHAQPRRRAPTAMVAAASSSTA
PPATTSVAPIRKLLVANRGEIAIRVIRACAELGIFSVAVYSQADRDALHV
SLADQAICIGDAPSASSYLCVPNILAAATVTGADAIHPGYGFLSENAEFA
DICAAHSLRFVGPTAEAISKMGDKATAKATMLDAGVPCVPGSRGVLESVE
EAIKVGRELGFPLMLKATAGGGGRGIKIVNKEDELEMAFKTCSAEAQAAF
SDGGLYMERFVQAPRHVEIQVLADNYGNCVHLGERDCSVQRRNQKLIEEA
PSPALNEELREQMGTAAVNAAQAIGYRGAGTVEFLLDRNGSFFFMEMNTR
IQVEHPVTEAITGVDLIQEQIRVAEGHKLAFEQKDIELRGHAIEARINAE
DPVHNFRPMPGKVTGFLPAGGIGVRWDGQVFTGWRIPPNYDSLLGKLIVW
APTRAEAIRRLKRALSETAVQGVPTTIEFHLQVVQNETFIKGEEIYTDFI
EKEGLLDKLREQKEE*
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spliced messenger RNA

>Ggra5299.t1 ID=Ggra5299.t1|Name=Ggra5299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000082_pilon:267909..269456+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGGCTTTCGTCGCGCCGCTCCCCCTCACGGCCAAGTCGCCTTC
AGCCTTCTCCTCCGCTCCCACCCACCGCCCCGCCTACCATGCGCAGCCCC
GCCGTCGCGCGCCCACCGCCATGGTGGCCGCGGCCTCATCATCCACCGCA
CCGCCCGCCACAACGTCCGTAGCGCCCATCCGCAAGCTACTTGTGGCCAA
CCGCGGCGAGATCGCCATCCGCGTCATCCGCGCCTGCGCCGAGCTCGGCA
TTTTCTCCGTTGCCGTATACTCGCAGGCCGACCGCGACGCGTTGCATGTG
TCGCTCGCGGATCAAGCCATATGCATTGGAGATGCGCCGTCCGCCTCTTC
GTACCTGTGCGTGCCTAACATCCTCGCTGCCGCCACGGTGACCGGCGCCG
ATGCTATTCATCCCGGCTACGGCTTCTTGTCCGAGAACGCCGAGTTTGCG
GACATTTGCGCCGCGCATAGCTTGCGCTTTGTGGGCCCGACGGCGGAGGC
TATCTCCAAGATGGGCGACAAGGCCACGGCCAAGGCCACCATGCTTGATG
CTGGTGTGCCGTGCGTACCGGGTAGCCGCGGCGTGCTGGAGTCCGTTGAG
GAGGCCATCAAGGTGGGACGCGAGCTGGGTTTCCCGTTGATGCTCAAGGC
CACGGCGGGTGGTGGAGGTCGTGGTATCAAGATCGTGAACAAGGAAGATG
AGCTGGAGATGGCGTTCAAAACGTGCTCGGCGGAGGCACAGGCGGCGTTT
TCGGACGGCGGGTTGTACATGGAACGCTTCGTGCAGGCGCCTAGACACGT
TGAGATTCAGGTGTTGGCGGATAATTATGGAAACTGCGTGCATCTTGGTG
AGCGTGATTGTTCGGTGCAGCGAAGAAACCAAAAGCTTATCGAAGAGGCT
CCATCGCCAGCGCTCAATGAGGAGCTGCGAGAGCAGATGGGTACAGCGGC
GGTGAACGCAGCGCAGGCTATCGGGTACCGCGGTGCTGGTACGGTGGAGT
TTTTGTTGGATCGTAACGGAAGCTTCTTCTTTATGGAAATGAACACACGT
ATTCAGGTGGAGCACCCCGTGACCGAGGCGATCACGGGGGTGGATCTTAT
CCAGGAGCAGATCCGGGTGGCGGAGGGTCACAAGCTGGCGTTTGAGCAAA
AGGACATTGAGTTGCGGGGCCACGCCATCGAGGCACGTATCAACGCGGAA
GACCCCGTACACAACTTCCGGCCGATGCCTGGTAAGGTGACTGGGTTTCT
ACCGGCGGGAGGAATTGGGGTGAGGTGGGATGGACAGGTGTTCACGGGAT
GGCGCATTCCACCGAATTACGACAGTCTGTTAGGTAAGCTTATTGTTTGG
GCGCCGACGCGGGCAGAGGCGATTCGGAGGCTGAAAAGGGCACTGAGCGA
GACGGCGGTGCAGGGCGTGCCGACGACGATCGAGTTCCACCTGCAGGTGG
TGCAGAACGAGACGTTCATCAAGGGAGAGGAGATCTACACGGACTTCATC
GAGAAGGAGGGACTGCTGGACAAACTGCGCGAGCAGAAGGAGGAGTGA
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protein sequence of Ggra5299.t1

>Ggra5299.t1 ID=Ggra5299.t1|Name=Ggra5299.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=516bp
MPPAFVAPLPLTAKSPSAFSSAPTHRPAYHAQPRRRAPTAMVAAASSSTA
PPATTSVAPIRKLLVANRGEIAIRVIRACAELGIFSVAVYSQADRDALHV
SLADQAICIGDAPSASSYLCVPNILAAATVTGADAIHPGYGFLSENAEFA
DICAAHSLRFVGPTAEAISKMGDKATAKATMLDAGVPCVPGSRGVLESVE
EAIKVGRELGFPLMLKATAGGGGRGIKIVNKEDELEMAFKTCSAEAQAAF
SDGGLYMERFVQAPRHVEIQVLADNYGNCVHLGERDCSVQRRNQKLIEEA
PSPALNEELREQMGTAAVNAAQAIGYRGAGTVEFLLDRNGSFFFMEMNTR
IQVEHPVTEAITGVDLIQEQIRVAEGHKLAFEQKDIELRGHAIEARINAE
DPVHNFRPMPGKVTGFLPAGGIGVRWDGQVFTGWRIPPNYDSLLGKLIVW
APTRAEAIRRLKRALSETAVQGVPTTIEFHLQVVQNETFIKGEEIYTDFI
EKEGLLDKLREQKEE*
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mRNA from alignment at tig00000082_pilon:267909..269456+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5299.t1 ID=Ggra5299.t1|Name=Ggra5299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1548bp|location=Sequence derived from alignment at tig00000082_pilon:267909..269456+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGGCTTTCGTCGCGCCGCTCCCCCTCACGGCCAAGTCGCCTTC
AGCCTTCTCCTCCGCTCCCACCCACCGCCCCGCCTACCATGCGCAGCCCC
GCCGTCGCGCGCCCACCGCCATGGTGGCCGCGGCCTCATCATCCACCGCA
CCGCCCGCCACAACGTCCGTAGCGCCCATCCGCAAGCTACTTGTGGCCAA
CCGCGGCGAGATCGCCATCCGCGTCATCCGCGCCTGCGCCGAGCTCGGCA
TTTTCTCCGTTGCCGTATACTCGCAGGCCGACCGCGACGCGTTGCATGTG
TCGCTCGCGGATCAAGCCATATGCATTGGAGATGCGCCGTCCGCCTCTTC
GTACCTGTGCGTGCCTAACATCCTCGCTGCCGCCACGGTGACCGGCGCCG
ATGCTATTCATCCCGGCTACGGCTTCTTGTCCGAGAACGCCGAGTTTGCG
GACATTTGCGCCGCGCATAGCTTGCGCTTTGTGGGCCCGACGGCGGAGGC
TATCTCCAAGATGGGCGACAAGGCCACGGCCAAGGCCACCATGCTTGATG
CTGGTGTGCCGTGCGTACCGGGTAGCCGCGGCGTGCTGGAGTCCGTTGAG
GAGGCCATCAAGGTGGGACGCGAGCTGGGTTTCCCGTTGATGCTCAAGGC
CACGGCGGGTGGTGGAGGTCGTGGTATCAAGATCGTGAACAAGGAAGATG
AGCTGGAGATGGCGTTCAAAACGTGCTCGGCGGAGGCACAGGCGGCGTTT
TCGGACGGCGGGTTGTACATGGAACGCTTCGTGCAGGCGCCTAGACACGT
TGAGATTCAGGTGTTGGCGGATAATTATGGAAACTGCGTGCATCTTGGTG
AGCGTGATTGTTCGGTGCAGCGAAGAAACCAAAAGCTTATCGAAGAGGCT
CCATCGCCAGCGCTCAATGAGGAGCTGCGAGAGCAGATGGGTACAGCGGC
GGTGAACGCAGCGCAGGCTATCGGGTACCGCGGTGCTGGTACGGTGGAGT
TTTTGTTGGATCGTAACGGAAGCTTCTTCTTTATGGAAATGAACACACGT
ATTCAGGTGGAGCACCCCGTGACCGAGGCGATCACGGGGGTGGATCTTAT
CCAGGAGCAGATCCGGGTGGCGGAGGGTCACAAGCTGGCGTTTGAGCAAA
AGGACATTGAGTTGCGGGGCCACGCCATCGAGGCACGTATCAACGCGGAA
GACCCCGTACACAACTTCCGGCCGATGCCTGGTAAGGTGACTGGGTTTCT
ACCGGCGGGAGGAATTGGGGTGAGGTGGGATGGACAGGTGTTCACGGGAT
GGCGCATTCCACCGAATTACGACAGTCTGTTAGGTAAGCTTATTGTTTGG
GCGCCGACGCGGGCAGAGGCGATTCGGAGGCTGAAAAGGGCACTGAGCGA
GACGGCGGTGCAGGGCGTGCCGACGACGATCGAGTTCCACCTGCAGGTGG
TGCAGAACGAGACGTTCATCAAGGGAGAGGAGATCTACACGGACTTCATC
GAGAAGGAGGGACTGCTGGACAAACTGCGCGAGCAGAAGGAGGAGTGA
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Coding sequence (CDS) from alignment at tig00000082_pilon:267909..269456+

>Ggra5299.t1 ID=Ggra5299.t1|Name=Ggra5299.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1548bp|location=Sequence derived from alignment at tig00000082_pilon:267909..269456+ (Gracilaria gracilis GNS1m male)
ATGCCGCCGGCTTTCGTCGCGCCGCTCCCCCTCACGGCCAAGTCGCCTTC
AGCCTTCTCCTCCGCTCCCACCCACCGCCCCGCCTACCATGCGCAGCCCC
GCCGTCGCGCGCCCACCGCCATGGTGGCCGCGGCCTCATCATCCACCGCA
CCGCCCGCCACAACGTCCGTAGCGCCCATCCGCAAGCTACTTGTGGCCAA
CCGCGGCGAGATCGCCATCCGCGTCATCCGCGCCTGCGCCGAGCTCGGCA
TTTTCTCCGTTGCCGTATACTCGCAGGCCGACCGCGACGCGTTGCATGTG
TCGCTCGCGGATCAAGCCATATGCATTGGAGATGCGCCGTCCGCCTCTTC
GTACCTGTGCGTGCCTAACATCCTCGCTGCCGCCACGGTGACCGGCGCCG
ATGCTATTCATCCCGGCTACGGCTTCTTGTCCGAGAACGCCGAGTTTGCG
GACATTTGCGCCGCGCATAGCTTGCGCTTTGTGGGCCCGACGGCGGAGGC
TATCTCCAAGATGGGCGACAAGGCCACGGCCAAGGCCACCATGCTTGATG
CTGGTGTGCCGTGCGTACCGGGTAGCCGCGGCGTGCTGGAGTCCGTTGAG
GAGGCCATCAAGGTGGGACGCGAGCTGGGTTTCCCGTTGATGCTCAAGGC
CACGGCGGGTGGTGGAGGTCGTGGTATCAAGATCGTGAACAAGGAAGATG
AGCTGGAGATGGCGTTCAAAACGTGCTCGGCGGAGGCACAGGCGGCGTTT
TCGGACGGCGGGTTGTACATGGAACGCTTCGTGCAGGCGCCTAGACACGT
TGAGATTCAGGTGTTGGCGGATAATTATGGAAACTGCGTGCATCTTGGTG
AGCGTGATTGTTCGGTGCAGCGAAGAAACCAAAAGCTTATCGAAGAGGCT
CCATCGCCAGCGCTCAATGAGGAGCTGCGAGAGCAGATGGGTACAGCGGC
GGTGAACGCAGCGCAGGCTATCGGGTACCGCGGTGCTGGTACGGTGGAGT
TTTTGTTGGATCGTAACGGAAGCTTCTTCTTTATGGAAATGAACACACGT
ATTCAGGTGGAGCACCCCGTGACCGAGGCGATCACGGGGGTGGATCTTAT
CCAGGAGCAGATCCGGGTGGCGGAGGGTCACAAGCTGGCGTTTGAGCAAA
AGGACATTGAGTTGCGGGGCCACGCCATCGAGGCACGTATCAACGCGGAA
GACCCCGTACACAACTTCCGGCCGATGCCTGGTAAGGTGACTGGGTTTCT
ACCGGCGGGAGGAATTGGGGTGAGGTGGGATGGACAGGTGTTCACGGGAT
GGCGCATTCCACCGAATTACGACAGTCTGTTAGGTAAGCTTATTGTTTGG
GCGCCGACGCGGGCAGAGGCGATTCGGAGGCTGAAAAGGGCACTGAGCGA
GACGGCGGTGCAGGGCGTGCCGACGACGATCGAGTTCCACCTGCAGGTGG
TGCAGAACGAGACGTTCATCAAGGGAGAGGAGATCTACACGGACTTCATC
GAGAAGGAGGGACTGCTGGACAAACTGCGCGAGCAGAAGGAGGAGTGA
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