Ggra5294.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5294.t1
Unique Name	Ggra5294.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000082_pilon	contig	tig00000082_pilon:253000..254148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5294	Ggra5294	Gracilaria gracilis GNS1m male	gene	tig00000082_pilon 253000..254148 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5294.t1.start1	Ggra5294.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000082_pilon 253000..253002 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5294.t1.CDS1	Ggra5294.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000082_pilon 253000..254148 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5294.t1.exon1	Ggra5294.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000082_pilon 253000..254148 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5294.t1.stop1	Ggra5294.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000082_pilon 254146..254148 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5294.t1	Ggra5294.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000082_pilon 253000..254148 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000082_pilon:253000..254148+
coding sequence from alignment at tig00000082_pilon:253000..254148+

mRNA sequence

>Ggra5294.t1 ID=Ggra5294.t1|Name=Ggra5294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MVVINLKSQFVSLIVTVLSGAAELFLFGAALGFNRYAECNALRRGRPVSV
RFHRTRTKFLAVFAMVVFIILEVIMSFFSDPALSRKSEPRRCVAVDRYDF
RTDAIYNTSTDSVMITCIRVDDDQTFQRVGNRSLEDPTVRCSKSSLYRWF
GDGRLERPLTANLTRSCRPPSPGFFPGQCVFTELRGREFLVSALLLDEEL
EQLIEEQIPIPFLVTILSFDIGTDQEIVLAGRALQAYDENVNDPLELRRR
TLTGSEATTCPFFLTSDATEVPLGLIWAIAVSWVLSVLAFVSTLLFKRQI
FYDMGDPLHWAQRTYRNIDEPISGNPVVTSVYEHGERLMYVSSSSSDEYD
FLRKVGTGLRDKFRSKRSAAAADDVSVEEQRV*

spliced messenger RNA

>Ggra5294.t1 ID=Ggra5294.t1|Name=Ggra5294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000082_pilon:253000..254148+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGTTATTAATCTCAAATCGCAGTTCGTCAGTCTCATCGTCACTGT
GCTGTCCGGCGCCGCGGAACTGTTTCTTTTCGGTGCCGCGCTCGGATTCA
ACAGATATGCAGAATGTAACGCTCTCAGACGCGGCAGGCCAGTCAGCGTG
CGTTTTCATCGCACGCGAACCAAGTTTCTTGCCGTCTTTGCCATGGTCGT
GTTCATTATTCTGGAAGTTATCATGTCCTTCTTCAGCGATCCCGCGCTCT
CCCGTAAGAGTGAACCTCGCCGCTGCGTCGCCGTCGATAGATACGACTTC
AGGACTGATGCCATCTACAATACTAGCACTGACTCCGTCATGATAACATG
CATTCGTGTCGATGATGACCAAACCTTTCAACGCGTTGGCAACCGAAGTC
TTGAAGACCCTACTGTTCGTTGCTCAAAGTCGTCCCTGTATAGGTGGTTC
GGAGATGGTCGCCTCGAGAGGCCACTTACTGCCAACCTCACCCGCTCTTG
CAGGCCTCCCAGCCCTGGCTTCTTCCCTGGCCAATGCGTGTTTACCGAAC
TGCGCGGCCGCGAATTTCTCGTCTCTGCTTTGCTCTTGGATGAAGAGCTT
GAACAATTGATTGAGGAACAGATCCCTATCCCTTTCCTAGTTACTATTCT
GTCCTTCGACATCGGCACAGATCAGGAAATCGTATTGGCCGGCCGCGCTT
TGCAGGCATACGATGAGAATGTGAATGACCCTCTGGAACTGCGCCGAAGA
ACACTCACGGGATCTGAGGCAACCACCTGTCCATTCTTCCTTACTAGCGA
TGCAACTGAGGTTCCGCTCGGACTAATCTGGGCCATCGCTGTGAGTTGGG
TACTCTCTGTACTGGCCTTCGTCTCGACGCTGCTGTTCAAACGTCAAATC
TTCTACGACATGGGAGATCCGTTACACTGGGCCCAGCGTACGTATCGAAA
CATTGACGAGCCCATCAGTGGAAACCCAGTGGTTACCAGTGTGTACGAGC
ATGGTGAGCGACTCATGTACGTATCGAGCTCATCGTCGGATGAGTACGAC
TTTCTGAGAAAAGTGGGAACAGGTTTGCGTGATAAGTTCAGGTCCAAACG
GTCAGCAGCAGCAGCGGATGACGTCTCGGTGGAGGAACAGCGCGTTTAG

protein sequence of Ggra5294.t1

>Ggra5294.t1 ID=Ggra5294.t1|Name=Ggra5294.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MVVINLKSQFVSLIVTVLSGAAELFLFGAALGFNRYAECNALRRGRPVSV
RFHRTRTKFLAVFAMVVFIILEVIMSFFSDPALSRKSEPRRCVAVDRYDF
RTDAIYNTSTDSVMITCIRVDDDQTFQRVGNRSLEDPTVRCSKSSLYRWF
GDGRLERPLTANLTRSCRPPSPGFFPGQCVFTELRGREFLVSALLLDEEL
EQLIEEQIPIPFLVTILSFDIGTDQEIVLAGRALQAYDENVNDPLELRRR
TLTGSEATTCPFFLTSDATEVPLGLIWAIAVSWVLSVLAFVSTLLFKRQI
FYDMGDPLHWAQRTYRNIDEPISGNPVVTSVYEHGERLMYVSSSSSDEYD
FLRKVGTGLRDKFRSKRSAAAADDVSVEEQRV*

mRNA from alignment at tig00000082_pilon:253000..254148+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5294.t1 ID=Ggra5294.t1|Name=Ggra5294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000082_pilon:253000..254148+ (Gracilaria gracilis GNS1m male)
ATGGTGGTTATTAATCTCAAATCGCAGTTCGTCAGTCTCATCGTCACTGT
GCTGTCCGGCGCCGCGGAACTGTTTCTTTTCGGTGCCGCGCTCGGATTCA
ACAGATATGCAGAATGTAACGCTCTCAGACGCGGCAGGCCAGTCAGCGTG
CGTTTTCATCGCACGCGAACCAAGTTTCTTGCCGTCTTTGCCATGGTCGT
GTTCATTATTCTGGAAGTTATCATGTCCTTCTTCAGCGATCCCGCGCTCT
CCCGTAAGAGTGAACCTCGCCGCTGCGTCGCCGTCGATAGATACGACTTC
AGGACTGATGCCATCTACAATACTAGCACTGACTCCGTCATGATAACATG
CATTCGTGTCGATGATGACCAAACCTTTCAACGCGTTGGCAACCGAAGTC
TTGAAGACCCTACTGTTCGTTGCTCAAAGTCGTCCCTGTATAGGTGGTTC
GGAGATGGTCGCCTCGAGAGGCCACTTACTGCCAACCTCACCCGCTCTTG
CAGGCCTCCCAGCCCTGGCTTCTTCCCTGGCCAATGCGTGTTTACCGAAC
TGCGCGGCCGCGAATTTCTCGTCTCTGCTTTGCTCTTGGATGAAGAGCTT
GAACAATTGATTGAGGAACAGATCCCTATCCCTTTCCTAGTTACTATTCT
GTCCTTCGACATCGGCACAGATCAGGAAATCGTATTGGCCGGCCGCGCTT
TGCAGGCATACGATGAGAATGTGAATGACCCTCTGGAACTGCGCCGAAGA
ACACTCACGGGATCTGAGGCAACCACCTGTCCATTCTTCCTTACTAGCGA
TGCAACTGAGGTTCCGCTCGGACTAATCTGGGCCATCGCTGTGAGTTGGG
TACTCTCTGTACTGGCCTTCGTCTCGACGCTGCTGTTCAAACGTCAAATC
TTCTACGACATGGGAGATCCGTTACACTGGGCCCAGCGTACGTATCGAAA
CATTGACGAGCCCATCAGTGGAAACCCAGTGGTTACCAGTGTGTACGAGC
ATGGTGAGCGACTCATGTACGTATCGAGCTCATCGTCGGATGAGTACGAC
TTTCTGAGAAAAGTGGGAACAGGTTTGCGTGATAAGTTCAGGTCCAAACG
GTCAGCAGCAGCAGCGGATGACGTCTCGGTGGAGGAACAGCGCGTTTAG

Coding sequence (CDS) from alignment at tig00000082_pilon:253000..254148+

>Ggra5294.t1 ID=Ggra5294.t1|Name=Ggra5294.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000082_pilon:253000..254148+ (Gracilaria gracilis GNS1m male)
ATGGTGGTTATTAATCTCAAATCGCAGTTCGTCAGTCTCATCGTCACTGT
GCTGTCCGGCGCCGCGGAACTGTTTCTTTTCGGTGCCGCGCTCGGATTCA
ACAGATATGCAGAATGTAACGCTCTCAGACGCGGCAGGCCAGTCAGCGTG
CGTTTTCATCGCACGCGAACCAAGTTTCTTGCCGTCTTTGCCATGGTCGT
GTTCATTATTCTGGAAGTTATCATGTCCTTCTTCAGCGATCCCGCGCTCT
CCCGTAAGAGTGAACCTCGCCGCTGCGTCGCCGTCGATAGATACGACTTC
AGGACTGATGCCATCTACAATACTAGCACTGACTCCGTCATGATAACATG
CATTCGTGTCGATGATGACCAAACCTTTCAACGCGTTGGCAACCGAAGTC
TTGAAGACCCTACTGTTCGTTGCTCAAAGTCGTCCCTGTATAGGTGGTTC
GGAGATGGTCGCCTCGAGAGGCCACTTACTGCCAACCTCACCCGCTCTTG
CAGGCCTCCCAGCCCTGGCTTCTTCCCTGGCCAATGCGTGTTTACCGAAC
TGCGCGGCCGCGAATTTCTCGTCTCTGCTTTGCTCTTGGATGAAGAGCTT
GAACAATTGATTGAGGAACAGATCCCTATCCCTTTCCTAGTTACTATTCT
GTCCTTCGACATCGGCACAGATCAGGAAATCGTATTGGCCGGCCGCGCTT
TGCAGGCATACGATGAGAATGTGAATGACCCTCTGGAACTGCGCCGAAGA
ACACTCACGGGATCTGAGGCAACCACCTGTCCATTCTTCCTTACTAGCGA
TGCAACTGAGGTTCCGCTCGGACTAATCTGGGCCATCGCTGTGAGTTGGG
TACTCTCTGTACTGGCCTTCGTCTCGACGCTGCTGTTCAAACGTCAAATC
TTCTACGACATGGGAGATCCGTTACACTGGGCCCAGCGTACGTATCGAAA
CATTGACGAGCCCATCAGTGGAAACCCAGTGGTTACCAGTGTGTACGAGC
ATGGTGAGCGACTCATGTACGTATCGAGCTCATCGTCGGATGAGTACGAC
TTTCTGAGAAAAGTGGGAACAGGTTTGCGTGATAAGTTCAGGTCCAAACG
GTCAGCAGCAGCAGCGGATGACGTCTCGGTGGAGGAACAGCGCGTTTAG