Ggra5288.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5288.t1
Unique NameGgra5288.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:222110..222850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA14782
Preferred nameRRP5
PFAMsS1,Suf
Max annot lvl2759|Eukaryota
KEGG koko:K14792,ko:K20353
GOsGO:0000027,GO:0000028,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000464,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009553,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034463,GO:0034470,GO:0034471,GO:0034511,GO:0034512,GO:0034513,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue3.52e-06
EggNOG OGsCOG0539@1|root,KOG1070@2759|Eukaryota
Descriptionmaturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryJ
BRITEko00000,ko03009,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5288Ggra5288Gracilaria gracilis GNS1m malegenetig00000082_pilon 222110..222850 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5288.t1.stop1Ggra5288.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 222110..222112 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5288.t1.CDS1Ggra5288.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 222110..222850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5288.t1.exon1Ggra5288.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 222110..222850 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5288.t1.start1Ggra5288.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 222848..222850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5288.t1Ggra5288.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 222110..222850 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5288.t1 ID=Ggra5288.t1|Name=Ggra5288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=247bp
MEKSSLKLSMVLRKRPRRKLAEDVLRKEFTEGMKLTGTVRKIEPFGALIN
IGHGGVALLHKSEVDQDHFVSNTFDEWEVGQDITAIVIKVRNGRVNFGTK
RCYFEAIHINDDEVSAVLEENDKARFRAKSGNSELNEIEIISVERNEHVT
KQEDNVGGEGLEKETDDSDACEAGVGGKVQLNEEELPTHFAPSGRSSLLF
DQQSASSVPPLKVSYGFNFDEEPDTEKNFGSRSPRRGGSCASRKAY*
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spliced messenger RNA

>Ggra5288.t1 ID=Ggra5288.t1|Name=Ggra5288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000082_pilon:222110..222850- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAAAAAGCTCTTTAAAGCTCTCTATGGTTTTGCGAAAGAGACCACG
TCGGAAGCTCGCCGAGGATGTCTTGCGTAAGGAGTTCACAGAAGGGATGA
AATTAACAGGAACTGTGCGAAAGATTGAGCCTTTTGGTGCTCTGATTAAT
ATTGGGCATGGTGGAGTTGCCTTGTTGCACAAGAGCGAAGTCGATCAGGA
CCATTTTGTCAGTAATACTTTTGACGAGTGGGAAGTTGGACAGGACATAA
CTGCCATTGTCATCAAAGTGCGAAACGGTAGAGTTAATTTTGGGACTAAA
CGTTGCTATTTCGAAGCTATTCATATTAATGATGATGAGGTCTCGGCTGT
GTTAGAGGAAAACGACAAAGCTAGATTTCGGGCCAAGAGTGGGAACAGCG
AGCTCAATGAGATAGAAATCATTAGTGTCGAGAGAAACGAACATGTAACT
AAGCAAGAAGACAATGTTGGGGGTGAAGGGCTAGAGAAGGAAACTGACGA
CTCTGACGCTTGCGAGGCTGGGGTAGGTGGAAAGGTTCAGCTAAATGAGG
AAGAGTTACCGACCCACTTTGCGCCCAGCGGAAGATCCAGCTTACTATTT
GATCAACAGAGTGCATCTTCTGTACCGCCCTTGAAGGTATCTTATGGCTT
CAACTTTGATGAGGAGCCTGATACGGAAAAAAACTTCGGTTCAAGAAGTC
CAAGAAGAGGGGGAAGTTGTGCAAGTAGGAAAGCCTATTGA
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protein sequence of Ggra5288.t1

>Ggra5288.t1 ID=Ggra5288.t1|Name=Ggra5288.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=247bp
MEKSSLKLSMVLRKRPRRKLAEDVLRKEFTEGMKLTGTVRKIEPFGALIN
IGHGGVALLHKSEVDQDHFVSNTFDEWEVGQDITAIVIKVRNGRVNFGTK
RCYFEAIHINDDEVSAVLEENDKARFRAKSGNSELNEIEIISVERNEHVT
KQEDNVGGEGLEKETDDSDACEAGVGGKVQLNEEELPTHFAPSGRSSLLF
DQQSASSVPPLKVSYGFNFDEEPDTEKNFGSRSPRRGGSCASRKAY*
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mRNA from alignment at tig00000082_pilon:222110..222850-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5288.t1 ID=Ggra5288.t1|Name=Ggra5288.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=741bp|location=Sequence derived from alignment at tig00000082_pilon:222110..222850- (Gracilaria gracilis GNS1m male)
ATGGAAAAAAGCTCTTTAAAGCTCTCTATGGTTTTGCGAAAGAGACCACG
TCGGAAGCTCGCCGAGGATGTCTTGCGTAAGGAGTTCACAGAAGGGATGA
AATTAACAGGAACTGTGCGAAAGATTGAGCCTTTTGGTGCTCTGATTAAT
ATTGGGCATGGTGGAGTTGCCTTGTTGCACAAGAGCGAAGTCGATCAGGA
CCATTTTGTCAGTAATACTTTTGACGAGTGGGAAGTTGGACAGGACATAA
CTGCCATTGTCATCAAAGTGCGAAACGGTAGAGTTAATTTTGGGACTAAA
CGTTGCTATTTCGAAGCTATTCATATTAATGATGATGAGGTCTCGGCTGT
GTTAGAGGAAAACGACAAAGCTAGATTTCGGGCCAAGAGTGGGAACAGCG
AGCTCAATGAGATAGAAATCATTAGTGTCGAGAGAAACGAACATGTAACT
AAGCAAGAAGACAATGTTGGGGGTGAAGGGCTAGAGAAGGAAACTGACGA
CTCTGACGCTTGCGAGGCTGGGGTAGGTGGAAAGGTTCAGCTAAATGAGG
AAGAGTTACCGACCCACTTTGCGCCCAGCGGAAGATCCAGCTTACTATTT
GATCAACAGAGTGCATCTTCTGTACCGCCCTTGAAGGTATCTTATGGCTT
CAACTTTGATGAGGAGCCTGATACGGAAAAAAACTTCGGTTCAAGAAGTC
CAAGAAGAGGGGGAAGTTGTGCAAGTAGGAAAGCCTATTGA
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Coding sequence (CDS) from alignment at tig00000082_pilon:222110..222850-

>Ggra5288.t1 ID=Ggra5288.t1|Name=Ggra5288.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=741bp|location=Sequence derived from alignment at tig00000082_pilon:222110..222850- (Gracilaria gracilis GNS1m male)
ATGGAAAAAAGCTCTTTAAAGCTCTCTATGGTTTTGCGAAAGAGACCACG
TCGGAAGCTCGCCGAGGATGTCTTGCGTAAGGAGTTCACAGAAGGGATGA
AATTAACAGGAACTGTGCGAAAGATTGAGCCTTTTGGTGCTCTGATTAAT
ATTGGGCATGGTGGAGTTGCCTTGTTGCACAAGAGCGAAGTCGATCAGGA
CCATTTTGTCAGTAATACTTTTGACGAGTGGGAAGTTGGACAGGACATAA
CTGCCATTGTCATCAAAGTGCGAAACGGTAGAGTTAATTTTGGGACTAAA
CGTTGCTATTTCGAAGCTATTCATATTAATGATGATGAGGTCTCGGCTGT
GTTAGAGGAAAACGACAAAGCTAGATTTCGGGCCAAGAGTGGGAACAGCG
AGCTCAATGAGATAGAAATCATTAGTGTCGAGAGAAACGAACATGTAACT
AAGCAAGAAGACAATGTTGGGGGTGAAGGGCTAGAGAAGGAAACTGACGA
CTCTGACGCTTGCGAGGCTGGGGTAGGTGGAAAGGTTCAGCTAAATGAGG
AAGAGTTACCGACCCACTTTGCGCCCAGCGGAAGATCCAGCTTACTATTT
GATCAACAGAGTGCATCTTCTGTACCGCCCTTGAAGGTATCTTATGGCTT
CAACTTTGATGAGGAGCCTGATACGGAAAAAAACTTCGGTTCAAGAAGTC
CAAGAAGAGGGGGAAGTTGTGCAAGTAGGAAAGCCTATTGA
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