Ggra5286.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5286.t1
Unique NameGgra5286.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:148491..149372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5286Ggra5286Gracilaria gracilis GNS1m malegenetig00000082_pilon 148491..149372 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5286.t1.stop1Ggra5286.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 148491..148493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5286.t1.CDS1Ggra5286.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 148491..149372 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5286.t1.exon1Ggra5286.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 148491..149372 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5286.t1.start1Ggra5286.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 149370..149372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5286.t1Ggra5286.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 148491..149372 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5286.t1 ID=Ggra5286.t1|Name=Ggra5286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MEVETSLPLGSRCVGGSKRAVEVLVCDKFVSVNHFDSKEYTKVGNLRLAY
TSLTEGHGIGLAVHNLSPVDYHFMCADLEYEDDDGDARSELSAKQCPLSM
EGKDGRIKTVSVLVRLGAKKRLGILLGSLIFSQLYTVSSILSLDSEKRDK
DHTDGQTRLPFHTAMPKIFCKYFVHLLPLHGMQDFLRVVKSNAKLVSIDV
GRSTLHCDLGDIAVKLENGNGADHCYPSRSSSQNCETSFSYYNVFTVLAH
TKSKWTTEEYNTVGIYVTISKKVVSGDTGAEEDLHLYMNTSLL*
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spliced messenger RNA

>Ggra5286.t1 ID=Ggra5286.t1|Name=Ggra5286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000082_pilon:148491..149372- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTAGAAACATCTCTCCCTCTCGGCAGCCGCTGCGTTGGGGGGTC
AAAGCGTGCTGTGGAAGTGCTTGTATGTGACAAGTTTGTGAGCGTTAACC
ACTTTGACTCGAAGGAATATACGAAGGTGGGGAATTTACGCCTGGCATAT
ACGTCCCTCACCGAAGGCCATGGGATTGGATTAGCTGTACACAACCTCTC
TCCAGTGGACTACCACTTCATGTGTGCCGATCTCGAGTATGAAGACGATG
ACGGAGATGCAAGAAGTGAGTTGAGTGCGAAACAATGTCCGTTGTCAATG
GAGGGCAAAGATGGAAGGATTAAGACGGTTTCGGTGCTAGTAAGGCTTGG
TGCGAAGAAACGGCTTGGCATTCTACTTGGCTCCCTTATATTCTCCCAGC
TGTACACAGTGTCTTCGATACTCTCACTTGACTCTGAGAAGAGAGACAAA
GACCACACCGACGGCCAAACGAGGCTTCCATTTCATACAGCGATGCCAAA
GATCTTCTGCAAGTACTTTGTTCATCTCCTTCCGCTCCATGGAATGCAAG
ACTTTCTACGCGTCGTCAAAAGCAATGCTAAACTTGTCTCCATCGATGTA
GGACGTAGCACCCTACACTGTGACCTTGGCGACATTGCAGTGAAACTGGA
GAACGGAAATGGAGCTGATCATTGCTATCCATCTCGCAGCTCTAGCCAAA
ACTGCGAGACCTCGTTTTCATATTACAATGTTTTCACTGTTCTAGCACAT
ACGAAATCGAAGTGGACAACTGAAGAATACAACACGGTGGGTATATATGT
GACGATATCAAAGAAGGTCGTCAGCGGAGACACAGGAGCCGAGGAAGACC
TTCATTTGTACATGAATACTTCGCTCCTTTGA
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protein sequence of Ggra5286.t1

>Ggra5286.t1 ID=Ggra5286.t1|Name=Ggra5286.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MEVETSLPLGSRCVGGSKRAVEVLVCDKFVSVNHFDSKEYTKVGNLRLAY
TSLTEGHGIGLAVHNLSPVDYHFMCADLEYEDDDGDARSELSAKQCPLSM
EGKDGRIKTVSVLVRLGAKKRLGILLGSLIFSQLYTVSSILSLDSEKRDK
DHTDGQTRLPFHTAMPKIFCKYFVHLLPLHGMQDFLRVVKSNAKLVSIDV
GRSTLHCDLGDIAVKLENGNGADHCYPSRSSSQNCETSFSYYNVFTVLAH
TKSKWTTEEYNTVGIYVTISKKVVSGDTGAEEDLHLYMNTSLL*
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mRNA from alignment at tig00000082_pilon:148491..149372-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5286.t1 ID=Ggra5286.t1|Name=Ggra5286.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000082_pilon:148491..149372- (Gracilaria gracilis GNS1m male)
ATGGAAGTAGAAACATCTCTCCCTCTCGGCAGCCGCTGCGTTGGGGGGTC
AAAGCGTGCTGTGGAAGTGCTTGTATGTGACAAGTTTGTGAGCGTTAACC
ACTTTGACTCGAAGGAATATACGAAGGTGGGGAATTTACGCCTGGCATAT
ACGTCCCTCACCGAAGGCCATGGGATTGGATTAGCTGTACACAACCTCTC
TCCAGTGGACTACCACTTCATGTGTGCCGATCTCGAGTATGAAGACGATG
ACGGAGATGCAAGAAGTGAGTTGAGTGCGAAACAATGTCCGTTGTCAATG
GAGGGCAAAGATGGAAGGATTAAGACGGTTTCGGTGCTAGTAAGGCTTGG
TGCGAAGAAACGGCTTGGCATTCTACTTGGCTCCCTTATATTCTCCCAGC
TGTACACAGTGTCTTCGATACTCTCACTTGACTCTGAGAAGAGAGACAAA
GACCACACCGACGGCCAAACGAGGCTTCCATTTCATACAGCGATGCCAAA
GATCTTCTGCAAGTACTTTGTTCATCTCCTTCCGCTCCATGGAATGCAAG
ACTTTCTACGCGTCGTCAAAAGCAATGCTAAACTTGTCTCCATCGATGTA
GGACGTAGCACCCTACACTGTGACCTTGGCGACATTGCAGTGAAACTGGA
GAACGGAAATGGAGCTGATCATTGCTATCCATCTCGCAGCTCTAGCCAAA
ACTGCGAGACCTCGTTTTCATATTACAATGTTTTCACTGTTCTAGCACAT
ACGAAATCGAAGTGGACAACTGAAGAATACAACACGGTGGGTATATATGT
GACGATATCAAAGAAGGTCGTCAGCGGAGACACAGGAGCCGAGGAAGACC
TTCATTTGTACATGAATACTTCGCTCCTTTGA
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Coding sequence (CDS) from alignment at tig00000082_pilon:148491..149372-

>Ggra5286.t1 ID=Ggra5286.t1|Name=Ggra5286.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000082_pilon:148491..149372- (Gracilaria gracilis GNS1m male)
ATGGAAGTAGAAACATCTCTCCCTCTCGGCAGCCGCTGCGTTGGGGGGTC
AAAGCGTGCTGTGGAAGTGCTTGTATGTGACAAGTTTGTGAGCGTTAACC
ACTTTGACTCGAAGGAATATACGAAGGTGGGGAATTTACGCCTGGCATAT
ACGTCCCTCACCGAAGGCCATGGGATTGGATTAGCTGTACACAACCTCTC
TCCAGTGGACTACCACTTCATGTGTGCCGATCTCGAGTATGAAGACGATG
ACGGAGATGCAAGAAGTGAGTTGAGTGCGAAACAATGTCCGTTGTCAATG
GAGGGCAAAGATGGAAGGATTAAGACGGTTTCGGTGCTAGTAAGGCTTGG
TGCGAAGAAACGGCTTGGCATTCTACTTGGCTCCCTTATATTCTCCCAGC
TGTACACAGTGTCTTCGATACTCTCACTTGACTCTGAGAAGAGAGACAAA
GACCACACCGACGGCCAAACGAGGCTTCCATTTCATACAGCGATGCCAAA
GATCTTCTGCAAGTACTTTGTTCATCTCCTTCCGCTCCATGGAATGCAAG
ACTTTCTACGCGTCGTCAAAAGCAATGCTAAACTTGTCTCCATCGATGTA
GGACGTAGCACCCTACACTGTGACCTTGGCGACATTGCAGTGAAACTGGA
GAACGGAAATGGAGCTGATCATTGCTATCCATCTCGCAGCTCTAGCCAAA
ACTGCGAGACCTCGTTTTCATATTACAATGTTTTCACTGTTCTAGCACAT
ACGAAATCGAAGTGGACAACTGAAGAATACAACACGGTGGGTATATATGT
GACGATATCAAAGAAGGTCGTCAGCGGAGACACAGGAGCCGAGGAAGACC
TTCATTTGTACATGAATACTTCGCTCCTTTGA
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