Ggra5285.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5285.t1
Unique NameGgra5285.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000082_piloncontigtig00000082_pilon:147815..148099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5285Ggra5285Gracilaria gracilis GNS1m malegenetig00000082_pilon 147815..148099 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5285.t1.stop1Ggra5285.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000082_pilon 147815..147817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5285.t1.CDS1Ggra5285.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000082_pilon 147815..148099 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5285.t1.exon1Ggra5285.t1.exon1Gracilaria gracilis GNS1m maleexontig00000082_pilon 147815..148099 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5285.t1.start1Ggra5285.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000082_pilon 148097..148099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5285.t1Ggra5285.t1Gracilaria gracilis GNS1m malepolypeptidetig00000082_pilon 147815..148099 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5285.t1 ID=Ggra5285.t1|Name=Ggra5285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=95bp
MPGARSLTDVYENNPIWYVDGHGLKGTQKEKIPLGLSPLGISGDDVVPNK
TVIPYDEIESLIRKAVKVPIDLEDLLAEEEACNGSEDEDEMESE*
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spliced messenger RNA

>Ggra5285.t1 ID=Ggra5285.t1|Name=Ggra5285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00000082_pilon:147815..148099- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGGCGCCAGATCTTTAACTGATGTTTACGAAAACAACCCCATATG
GTACGTTGACGGACATGGACTGAAAGGCACTCAGAAAGAAAAGATTCCTC
TTGGGTTGTCCCCTTTAGGTATATCTGGTGATGATGTTGTTCCGAACAAA
ACAGTTATCCCATACGACGAGATAGAGAGTTTGATAAGAAAGGCAGTCAA
GGTTCCCATAGATCTAGAAGATCTATTAGCAGAGGAAGAAGCCTGTAACG
GGTCAGAAGACGAGGACGAAATGGAATCAGAGTGA
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protein sequence of Ggra5285.t1

>Ggra5285.t1 ID=Ggra5285.t1|Name=Ggra5285.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=95bp
MPGARSLTDVYENNPIWYVDGHGLKGTQKEKIPLGLSPLGISGDDVVPNK
TVIPYDEIESLIRKAVKVPIDLEDLLAEEEACNGSEDEDEMESE*
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mRNA from alignment at tig00000082_pilon:147815..148099-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5285.t1 ID=Ggra5285.t1|Name=Ggra5285.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp|location=Sequence derived from alignment at tig00000082_pilon:147815..148099- (Gracilaria gracilis GNS1m male)
ATGCCAGGCGCCAGATCTTTAACTGATGTTTACGAAAACAACCCCATATG
GTACGTTGACGGACATGGACTGAAAGGCACTCAGAAAGAAAAGATTCCTC
TTGGGTTGTCCCCTTTAGGTATATCTGGTGATGATGTTGTTCCGAACAAA
ACAGTTATCCCATACGACGAGATAGAGAGTTTGATAAGAAAGGCAGTCAA
GGTTCCCATAGATCTAGAAGATCTATTAGCAGAGGAAGAAGCCTGTAACG
GGTCAGAAGACGAGGACGAAATGGAATCAGAGTGA
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Coding sequence (CDS) from alignment at tig00000082_pilon:147815..148099-

>Ggra5285.t1 ID=Ggra5285.t1|Name=Ggra5285.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=285bp|location=Sequence derived from alignment at tig00000082_pilon:147815..148099- (Gracilaria gracilis GNS1m male)
ATGCCAGGCGCCAGATCTTTAACTGATGTTTACGAAAACAACCCCATATG
GTACGTTGACGGACATGGACTGAAAGGCACTCAGAAAGAAAAGATTCCTC
TTGGGTTGTCCCCTTTAGGTATATCTGGTGATGATGTTGTTCCGAACAAA
ACAGTTATCCCATACGACGAGATAGAGAGTTTGATAAGAAAGGCAGTCAA
GGTTCCCATAGATCTAGAAGATCTATTAGCAGAGGAAGAAGCCTGTAACG
GGTCAGAAGACGAGGACGAAATGGAATCAGAGTGA
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