Ggra5238.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5238.t1
Unique NameGgra5238.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length30
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000646_piloncontigtig00000646_pilon:6893..11982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5238Ggra5238Gracilaria gracilis GNS1m malegenetig00000646_pilon 6893..11982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5238.t1.CDS1Ggra5238.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000646_pilon 6893..6901 +
Ggra5238.t1.CDS2Ggra5238.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000646_pilon 6960..6982 +
Ggra5238.t1.CDS3Ggra5238.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000646_pilon 7070..7090 +
Ggra5238.t1.CDS4Ggra5238.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000646_pilon 11793..11797 +
Ggra5238.t1.CDS5Ggra5238.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000646_pilon 11952..11982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5238.t1.exon1Ggra5238.t1.exon1Gracilaria gracilis GNS1m maleexontig00000646_pilon 6893..6901 +
Ggra5238.t1.exon2Ggra5238.t1.exon2Gracilaria gracilis GNS1m maleexontig00000646_pilon 6960..6982 +
Ggra5238.t1.exon3Ggra5238.t1.exon3Gracilaria gracilis GNS1m maleexontig00000646_pilon 7070..7090 +
Ggra5238.t1.exon4Ggra5238.t1.exon4Gracilaria gracilis GNS1m maleexontig00000646_pilon 11793..11797 +
Ggra5238.t1.exon5Ggra5238.t1.exon5Gracilaria gracilis GNS1m maleexontig00000646_pilon 11952..11982 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5238.t1.intron1Ggra5238.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000646_pilon 6902..6959 +
Ggra5238.t1.intron2Ggra5238.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000646_pilon 6983..7069 +
Ggra5238.t1.intron3Ggra5238.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000646_pilon 7091..11792 +
Ggra5238.t1.intron4Ggra5238.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000646_pilon 11798..11951 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5238.t1.stop1Ggra5238.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000646_pilon 11980..11982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5238.t1Ggra5238.t1Gracilaria gracilis GNS1m malepolypeptidetig00000646_pilon 6893..11982 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5238.t1 ID=Ggra5238.t1|Name=Ggra5238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=30bp
XVDKSFYPERPQLTEPTCVRHHTLANHGI*
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spliced messenger RNA

>Ggra5238.t1 ID=Ggra5238.t1|Name=Ggra5238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=89bp|location=Sequence derived from alignment at tig00000646_pilon:6893..11982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ttgtggacaagagtttctatccggaaagaccccagcttaccgagcccaca
tgcgtaagacatcatacactagcaaatcacggtatctag
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protein sequence of Ggra5238.t1

>Ggra5238.t1 ID=Ggra5238.t1|Name=Ggra5238.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=30bp
XVDKSFYPERPQLTEPTCVRHHTLANHGI*
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mRNA from alignment at tig00000646_pilon:6893..11982+

Legend: CDSpolypeptideexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5238.t1 ID=Ggra5238.t1|Name=Ggra5238.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=5090bp|location=Sequence derived from alignment at tig00000646_pilon:6893..11982+ (Gracilaria gracilis GNS1m male)
ttgtggacagtaagttccaagtatcttgcggtcttctaccgttaaatatg
ttctgacccgtcttcagagagtttctatccggaaagacccgtaagttcat
cggatgacaaggtccccatttcattctgagtctttgttggagacataatg
actgacattacctcgttttgtatgcagcagcttaccgagcccacatgcgt
acctgcaagagcaatacccccaagaaaacgaaacctacttcgacgaaaac
cgtgtcatcttcgcaaaagtaacgaacgaaagtttcgatggcacaaggaa
accattcgtgctttactgacaagtgaatcaattcatcactatgttttgca
tctgcttggctttgttactcctggtatctgaaatagattctcatttaacg
atttcgcgaatgtgatagacttttaaagatggtagtggaattaaattggg
ttaggcatatgttgttaatattgttgacctcttctgcattaaatcgagag
cggcaacacaacaggtttgcaatacgatgcataaatttggtggtagattg
tggagacgttggggtctgattgaatttactgtgtttgaggtcaatgcaat
attccgtggtgggaggctacgagtaaagttcgtattcgtattgttaatac
tgatactttgcagcgtaccttcaagcaatgtgtttgtacggcagcgttca
gtgttcacagtcccggtagacggggaactctagctccttccgaaaattgc
gacggccacaatcctcagaatggcggaagaggtcgtacatcactaaccgt
agttggatggctagtaacccatccacaaaattgactagttctctaagtcg
ttccatgctctcgaattctgaccacagctctaggtacaagtcaagatcct
ccgttttgccaccacacctctcagaaaagtcaagcgcgtctagaaaggga
acatcccaccgggtgtacgcaaagtcaatgaatatcagcttagattgttc
agctggaataatgttcacaggacacaaatcaccatgaaccaaggctaatg
gcactttgtattcggcaatgttgttcagtacattgtgcacatggctcaag
tacatttctttgtaacagcctttatattcagagttgcctacattttccat
accacgctcctgagcacactgccagtcgggatcttcaaccatttctttca
cgcgagagatccatttttctctgttcattaatggaagcccagtctccaga
atttcatctcttttcgacaaagactgtatctggactttgccccatgtcaa
taggatgtttcgaaacaactgcacgtccaattttgcaagatcatccatat
ccgacaaggtacgtccataatctctcatcaacagaatattgttcgcaaca
tcaaaggctaaaggtttcggaaaggtctcaggcattacttgactcagacc
taacgtcgtgcttgtttcatgattaaaagcttgtggtagcatagccttca
taaaaaactttgatccacatcgagtgtgtgccactagaaggcagctttgc
gaaccgttccttttttggaggatatattccggtccaatttcgtatccatg
ctctagaagaactcctgtgatccacgcagcagcgccatcaaaccatcctg
cttttgagtatggatagaggcgctttaaatgaatgtcaagaccatcggtc
gcatactgtttcagatatcgtgcaacagcaggtgtgcgcggatcaatgca
gatttcgccagtttcgcttttccggacccagcccaattcattcattttat
ccgacagtgcgtagcgagggatatcaaacaccagcaattgaactttgtag
aatggcccatttagtacttcacactccgatcgcaacaagactatatcaaa
cggcaagcataactgctttcgaacgtagattccaagtttgtccagttcaa
tgtctattgcatcatgatacacaatggaaggaagttgtgatgggctgcct
ttccatgtgagaacgctttgattgccaggatgcacaataagaacatagta
gcagttgccggaacgttttgcatcggacataatgtgcggatggaagtgaa
gcgactcaaaagatagactttggctgtcggagatgggataaaggtgcgat
atggtgagaaaaggtgcggcacagaaaagcaaggagaaaaggttctagtg
cgagaaaagagtcttgactgcctctagtgttttattacagtgattttgca
cgtgtgaatacgtgtgaagtgcatgtactaacaccagtgtgacataaccc
caataccaactagaactcaaaagaactgaaaagaacaaaaatgatccgtt
ccggtcatagagatctcagatgggtcactgattcagtcattgtgcaggat
aatacaagtaccactcagcagttggaaaaaccttttttaggaattatgac
aaaacattgtctggcttcataaacacttttatgacataattgcactttcc
ccgaatgttaaggacgaaaaagagaatctttatgtaatttgcttaattac
gaataagattcatgaactaggtgagagaatcagaacataaaacatgttta
tgaagatccactatttttttgtttaactaaagtggaagaacactgaaact
tatgttgcgggcagaaagatatatagttctctatctaccaagctctttga
atgctacttaaagcataactcttctaccagactagtacattacagtagat
acactaccaaccgcaaattttgaggacaatgaattttgagggcctgattt
taaatgaaagatggattcttggaaagaagctatatttttcagatgaaaag
gttgttttcgaagcaacaactgttgtcgacccttactatgtagcagcggt
gaaaatgggaataagccatggcggagacgaacaagctcaacaacgaatta
ggtttaaaattgaaccagagttttgctgtttaaacgatctaaaattttct
gctggaagagatggactgaatattccatttttgctcgacaatggcaagta
tgacgcgtttcaatatatcgtgatgacaaaatatgatcattccttgcttc
aaaaactagagagcataaggtttttttcgactgacacagtcataaaaata
gcactggaaacgtttaaagtaatggattcgttccatcaaaatcattatgc
ccatggaaagattatggaagagaactttatgacgaacggacagggtcatg
agttatatctcattgattttgagcaagctgtagaattcgaaatgcaggaa
agacatagagatcttgttgactgggttcaaatgataattcgactgttacg
aacagacatgcgagagacagctgccacaaaagttaatgcgtcgaagaaga
aaaggttttatgtttctgtgctaaaatggaatgatgactcagtagatatt
cgtcaacaaatcagagaaaacttggaagaagctaacgcttttcgtgatga
aatatcagactctttcccaatcgagctttttgagttggcagagaacattc
ttggaaaggaggaaagtgttctctcgagtgacaagatcacagagactttg
tatcagacagttgcaaacctgatagtttacgattggcaaggagtttctca
tgctaatattagacgtatgaaatctccaagaacgtaatgtatggtacaga
aatcattagccataagtaatttttaagtttgaggtagacataggcttttg
agtgaacggtatgtctgacccgtcaatcaaggccactcaattttgactct
tgactaaaatgacaataaccttatgtaatgatgcgctacctttatcaatt
acaatctacgctttgacggggcgaatgacgaatgtgatgactccgagttt
aagacgtgctttcgggctcaaaacaataacaaccctagtacaggactttg
ccttaaaacactgacactaagctgaatatgccaaatcacctggggttacc
taatgcaagtaagttactgtgcgatccaggaaaggcagaagtatttcagg
ctactttttgtgggatttcttaaatttcaaaatgagctgtgctaccatgt
ccgtcggagctatcggcagctccggtcccaagcgagagtggcggctgttc
gttagagcggcggggcgagcaatagctgctgccaaacacagcagcggctg
caacgagcgtaattgaaacaagattagcaagcactggcggacgatggcag
aggctctgatctgtagtggcagtagcgaggcagagcgttggtagagcaca
acagcgactacgagtaggattactgcaggtacacgtacacgtacacgtag
aagggtaatcttacaattaggaagaaccacttcgcagccgaacatgggaa
catgtaggatcgagtcatgttctcgtgttcaacgtgtataatgccaaagt
gcattttacacgtgtgtgtgaccatatcaatgattacaatgtgtcgtcac
ttgtcaagtcaaaatttcgaatctgttggagaaggctttcgagaaatgga
tcttcagccaatatgagcgatagagcctgcgactagtggcaaccactacg
gcgtctgcgttagcggaagaggggtatatgggttttggggatttggcgat
agtcagtagcctcgttgccgaattatgcgattagacgtttttggcggcac
tgagctcttgccgcgacaacaagcagcacccacaacagcgactagaagag
ccgacaaggcgtgcgagaggcgagacgaactcgcctttaaatgttgctgg
gagaaggttttcgacgaacgaatgctgatatagtattctactctcaggac
attgaatatatcacttcaacagctctcagtgtactatataccactgatag
gtaaggtacttttataattgtcacttatgctcggagagtagatctatgat
aatgttgttgaaacaagacaatagcctttccgtaggacagagcctccatt
gagagtgcgatctcgacatgacattaatgtcgtcgtgaatctgaccctta
tctctgaagacatcatacactagcaaatcacggtatctag
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Coding sequence (CDS) from alignment at tig00000646_pilon:6893..11982+

>Ggra5238.t1 ID=Ggra5238.t1|Name=Ggra5238.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=89bp|location=Sequence derived from alignment at tig00000646_pilon:6893..11982+ (Gracilaria gracilis GNS1m male)
ttgtggacaagagtttctatccggaaagaccccagcttaccgagcccaca
tgcgtaagacatcatacactagcaaatcacggtatctag
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