Ggra5237.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5237.t1
Unique NameGgra5237.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:858032..858883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX50250
Preferred nameNIT1
PFAMsCN_hydrolase,HIT
Max annot lvl2759|Eukaryota
KEGG rclassRC00096
KEGG koko:K01431,ko:K11206,ko:K20649
KEGG ReactionR00905,R04666,R08228
KEGG Pathwayko00240,ko00410,ko00770,ko00983,ko01100,map00240,map00410,map00770,map00983,map01100
KEGG ModuleM00046
GOsGO:0000257,GO:0003674,GO:0003824,GO:0004551,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009536,GO:0009987,GO:0010035,GO:0010038,GO:0015959,GO:0015961,GO:0015962,GO:0015964,GO:0016462,GO:0016787,GO:0016810,GO:0016815,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046434,GO:0046483,GO:0046686,GO:0046700,GO:0047710,GO:0050896,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
Evalue9.53e-83
EggNOG OGsCOG0388@1|root,KOG0807@2759|Eukaryota
EC3.5.1.6
Descriptionbis(5'-adenosyl)-triphosphatase activity
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5237Ggra5237Gracilaria gracilis GNS1m malegenetig00000069_pilon 858032..858883 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5237.t1.stop1Ggra5237.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 858032..858034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5237.t1.CDS1Ggra5237.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 858032..858883 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5237.t1.exon1Ggra5237.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 858032..858883 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5237.t1.start1Ggra5237.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 858881..858883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5237.t1Ggra5237.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 858032..858883 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5237.t1 ID=Ggra5237.t1|Name=Ggra5237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MGASSRVAIAQMTSTPCLEHNLRTASDLIAEARQHGATFVCLPECVDYVA
TSARQSVLLATPLRANPFVARLQSLATQHQLWISAGGIHERSAHHDDRIF
NTHVVLAPGDAAPRAVYRKLHLFDAQLPAAFVSERATTDAGDRLVVCRDT
PLGDVGLTTCYDLRFAELYVALRHAGAHSILVPSAFFVPTGRAHWHVLLR
ARAIETQCFVAAAAQVGRHHEKRQSYGHALLVGPYGDVLVDAADHSPVVR
VADVHLSHVQRVREAMPCAAHRRADVLGPVPRV*
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spliced messenger RNA

>Ggra5237.t1 ID=Ggra5237.t1|Name=Ggra5237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000069_pilon:858032..858883- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCAGCAGCAGGGTGGCCATCGCGCAGATGACGAGCACGCCATG
CCTGGAGCACAACCTGCGCACGGCCAGCGACCTCATCGCGGAGGCGCGCC
AGCACGGCGCGACCTTCGTGTGCCTGCCGGAGTGCGTGGACTACGTCGCC
ACCTCTGCGCGCCAGTCCGTGTTGCTCGCCACGCCGCTGCGCGCCAACCC
GTTCGTGGCGCGCCTGCAGTCGCTGGCCACGCAGCACCAGCTGTGGATCT
CCGCGGGCGGCATCCACGAGCGCAGCGCACACCACGACGACCGCATCTTC
AACACGCACGTCGTGCTGGCGCCGGGCGACGCCGCGCCGCGCGCCGTTTA
CCGCAAGCTGCACTTGTTCGACGCGCAGCTGCCGGCCGCGTTCGTGTCGG
AGCGCGCCACCACGGACGCCGGCGACCGCCTCGTCGTGTGTCGCGACACG
CCGTTGGGTGACGTCGGACTCACCACGTGCTACGACCTGCGCTTTGCCGA
GCTGTACGTCGCGCTGCGACACGCCGGCGCGCACTCCATTTTGGTGCCGT
CCGCCTTCTTTGTGCCTACCGGACGCGCGCATTGGCACGTGTTGCTGCGC
GCGCGCGCCATTGAGACGCAGTGTTTCGTCGCCGCCGCCGCGCAGGTGGG
GCGCCATCACGAGAAGCGCCAGAGCTATGGCCATGCCTTGTTGGTTGGAC
CGTACGGCGACGTGCTCGTCGATGCGGCTGACCACAGCCCGGTTGTGCGC
GTTGCCGACGTGCACTTGTCGCACGTGCAGCGCGTGCGTGAGGCAATGCC
GTGCGCTGCTCACCGTCGCGCAGACGTTCTGGGACCGGTGCCTCGAGTGT
GA
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protein sequence of Ggra5237.t1

>Ggra5237.t1 ID=Ggra5237.t1|Name=Ggra5237.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MGASSRVAIAQMTSTPCLEHNLRTASDLIAEARQHGATFVCLPECVDYVA
TSARQSVLLATPLRANPFVARLQSLATQHQLWISAGGIHERSAHHDDRIF
NTHVVLAPGDAAPRAVYRKLHLFDAQLPAAFVSERATTDAGDRLVVCRDT
PLGDVGLTTCYDLRFAELYVALRHAGAHSILVPSAFFVPTGRAHWHVLLR
ARAIETQCFVAAAAQVGRHHEKRQSYGHALLVGPYGDVLVDAADHSPVVR
VADVHLSHVQRVREAMPCAAHRRADVLGPVPRV*
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mRNA from alignment at tig00000069_pilon:858032..858883-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5237.t1 ID=Ggra5237.t1|Name=Ggra5237.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000069_pilon:858032..858883- (Gracilaria gracilis GNS1m male)
ATGGGCGCCAGCAGCAGGGTGGCCATCGCGCAGATGACGAGCACGCCATG
CCTGGAGCACAACCTGCGCACGGCCAGCGACCTCATCGCGGAGGCGCGCC
AGCACGGCGCGACCTTCGTGTGCCTGCCGGAGTGCGTGGACTACGTCGCC
ACCTCTGCGCGCCAGTCCGTGTTGCTCGCCACGCCGCTGCGCGCCAACCC
GTTCGTGGCGCGCCTGCAGTCGCTGGCCACGCAGCACCAGCTGTGGATCT
CCGCGGGCGGCATCCACGAGCGCAGCGCACACCACGACGACCGCATCTTC
AACACGCACGTCGTGCTGGCGCCGGGCGACGCCGCGCCGCGCGCCGTTTA
CCGCAAGCTGCACTTGTTCGACGCGCAGCTGCCGGCCGCGTTCGTGTCGG
AGCGCGCCACCACGGACGCCGGCGACCGCCTCGTCGTGTGTCGCGACACG
CCGTTGGGTGACGTCGGACTCACCACGTGCTACGACCTGCGCTTTGCCGA
GCTGTACGTCGCGCTGCGACACGCCGGCGCGCACTCCATTTTGGTGCCGT
CCGCCTTCTTTGTGCCTACCGGACGCGCGCATTGGCACGTGTTGCTGCGC
GCGCGCGCCATTGAGACGCAGTGTTTCGTCGCCGCCGCCGCGCAGGTGGG
GCGCCATCACGAGAAGCGCCAGAGCTATGGCCATGCCTTGTTGGTTGGAC
CGTACGGCGACGTGCTCGTCGATGCGGCTGACCACAGCCCGGTTGTGCGC
GTTGCCGACGTGCACTTGTCGCACGTGCAGCGCGTGCGTGAGGCAATGCC
GTGCGCTGCTCACCGTCGCGCAGACGTTCTGGGACCGGTGCCTCGAGTGT
GA
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Coding sequence (CDS) from alignment at tig00000069_pilon:858032..858883-

>Ggra5237.t1 ID=Ggra5237.t1|Name=Ggra5237.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000069_pilon:858032..858883- (Gracilaria gracilis GNS1m male)
ATGGGCGCCAGCAGCAGGGTGGCCATCGCGCAGATGACGAGCACGCCATG
CCTGGAGCACAACCTGCGCACGGCCAGCGACCTCATCGCGGAGGCGCGCC
AGCACGGCGCGACCTTCGTGTGCCTGCCGGAGTGCGTGGACTACGTCGCC
ACCTCTGCGCGCCAGTCCGTGTTGCTCGCCACGCCGCTGCGCGCCAACCC
GTTCGTGGCGCGCCTGCAGTCGCTGGCCACGCAGCACCAGCTGTGGATCT
CCGCGGGCGGCATCCACGAGCGCAGCGCACACCACGACGACCGCATCTTC
AACACGCACGTCGTGCTGGCGCCGGGCGACGCCGCGCCGCGCGCCGTTTA
CCGCAAGCTGCACTTGTTCGACGCGCAGCTGCCGGCCGCGTTCGTGTCGG
AGCGCGCCACCACGGACGCCGGCGACCGCCTCGTCGTGTGTCGCGACACG
CCGTTGGGTGACGTCGGACTCACCACGTGCTACGACCTGCGCTTTGCCGA
GCTGTACGTCGCGCTGCGACACGCCGGCGCGCACTCCATTTTGGTGCCGT
CCGCCTTCTTTGTGCCTACCGGACGCGCGCATTGGCACGTGTTGCTGCGC
GCGCGCGCCATTGAGACGCAGTGTTTCGTCGCCGCCGCCGCGCAGGTGGG
GCGCCATCACGAGAAGCGCCAGAGCTATGGCCATGCCTTGTTGGTTGGAC
CGTACGGCGACGTGCTCGTCGATGCGGCTGACCACAGCCCGGTTGTGCGC
GTTGCCGACGTGCACTTGTCGCACGTGCAGCGCGTGCGTGAGGCAATGCC
GTGCGCTGCTCACCGTCGCGCAGACGTTCTGGGACCGGTGCCTCGAGTGT
GA
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