Ggra5236.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5236.t1
Unique Name	Ggra5236.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	615

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:856145..857989 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S16_48V6.1
PFAMs	Glyco_hydro_47
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K01230
KEGG Reaction	R05982,R06722
KEGG Pathway	ko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG Module	M00073,M00074
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005794,GO:0005802,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009100,GO:0009987,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019538,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901564
Evalue	5.96e-61
EggNOG OGs	KOG2204@1\|root,KOG2204@2759\|Eukaryota,37I6P@33090\|Viridiplantae,3GG84@35493\|Streptophyta
EC	3.2.1.113
Description	Belongs to the glycosyl hydrolase 47 family
COG category	G
CAZy	GH47
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5236	Ggra5236	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 856145..857989 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5236.t1.start1	Ggra5236.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 856145..856147 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5236.t1.CDS1	Ggra5236.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 856145..857989 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5236.t1.exon1	Ggra5236.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 856145..857989 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5236.t1.stop1	Ggra5236.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 857987..857989 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5236.t1	Ggra5236.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 856145..857989 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:856145..857989+
coding sequence from alignment at tig00000069_pilon:856145..857989+

mRNA sequence

>Ggra5236.t1 ID=Ggra5236.t1|Name=Ggra5236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp
MRVLAKQAKHTLRFTLLRILYLLLTRTAVLAIFLSFSFALFLTSLATSPP
PAALEQASRDHVLHDKERHNCGCTRIDTCLTAVPVGSFSAPVPDLSSEHL
NEQRLNVLREAAFNSWQAYEKYAWGSDILRPRSEKGSDIFGLAATIIESI
PTLYIMRLVQPYKTARDWVDDHFNVEISQFVNVHEVTTRILGALISSYQL
TGDPMFLDKAEILAARLAPAFDTMNGVPFPLCRLAGFRNGSFDAADVCKG
TQTTQSAAAGISLEFRALAFHTLRPELRQLRCKADRAVQAVVEAGPRLLR
EHISDEIRGRSTSIDMDEDEEDEQSVLHQDSRFMTIHSYYAYMVELWQSA
VVAIGAGPAVDTTTTFTGHARGFYEYLTKAWRQGGGCEATYRYPLDASMH
MLLKRSIQETPTGDLYLRVLDSANEQNDAVVEQSMCYLAALFHIAAQHKE
ISARREEQWRDVAESLTKTCIRMYERFPGGLGGDSARYNGKVWITKGAYR
LQADVVEALFYMWRSTNDDYYRQTAWSIFLNMKKECELENGAFTVLREYA
IGNITQGDVMPSEFIGSTLKFLFLTFTDTETLPLDKWVFNRAGQPLVVTP
GLGAINNCATDMIR*

spliced messenger RNA

>Ggra5236.t1 ID=Ggra5236.t1|Name=Ggra5236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000069_pilon:856145..857989+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTGTTCTCGCGAAGCAAGCAAAGCACACTCTCCGTTTCACTCTACT
CCGTATTCTTTATCTGTTGCTCACTCGCACGGCAGTCCTTGCTATCTTCC
TATCGTTTTCATTTGCCCTTTTTCTCACCTCACTGGCAACGTCTCCTCCA
CCTGCCGCATTAGAGCAAGCGAGTCGCGATCATGTCCTCCACGATAAGGA
GCGCCACAACTGTGGATGTACTCGCATCGACACATGTTTGACAGCTGTTC
CAGTCGGTTCTTTCTCGGCACCAGTTCCAGATCTGAGCAGTGAGCATCTC
AACGAACAACGACTGAACGTGCTGCGCGAGGCTGCGTTCAACTCATGGCA
AGCATACGAGAAGTATGCATGGGGCTCCGACATACTTCGACCACGTTCGG
AAAAGGGCTCTGATATATTCGGTCTCGCGGCAACTATAATCGAATCTATT
CCTACTTTGTACATAATGCGTTTAGTGCAACCATACAAGACCGCCCGCGA
TTGGGTCGATGACCATTTCAACGTGGAAATCAGCCAGTTTGTAAACGTAC
ATGAGGTCACCACCAGAATCCTTGGAGCGCTGATTTCCTCTTACCAACTT
ACCGGTGATCCAATGTTTCTTGACAAGGCCGAGATTCTAGCCGCACGGCT
CGCTCCTGCGTTCGACACAATGAACGGCGTACCGTTTCCATTATGCCGAT
TGGCCGGTTTCCGAAATGGCTCGTTTGACGCTGCCGATGTTTGTAAGGGC
ACGCAAACCACTCAATCAGCTGCGGCTGGCATATCTTTGGAATTTCGTGC
TCTGGCGTTCCACACGCTCAGACCCGAACTAAGGCAGTTGCGATGCAAGG
CGGATCGTGCAGTGCAAGCAGTGGTCGAGGCTGGACCACGCTTGCTGAGA
GAGCATATCTCTGATGAGATCAGAGGTCGAAGCACTAGTATTGATATGGA
TGAGGATGAAGAAGACGAGCAATCAGTGTTGCATCAAGATTCTCGATTCA
TGACGATTCACTCCTATTATGCGTACATGGTGGAATTGTGGCAAAGCGCT
GTGGTTGCAATAGGTGCTGGACCTGCTGTTGATACGACTACAACGTTCAC
CGGACATGCGAGGGGATTTTACGAATATCTGACCAAGGCGTGGAGACAAG
GCGGTGGATGCGAAGCTACGTATCGTTACCCGTTGGATGCTTCTATGCAC
ATGTTGCTGAAGAGATCTATTCAGGAGACGCCCACAGGTGATCTTTACCT
TCGGGTGTTGGATAGCGCAAATGAACAGAATGATGCGGTTGTTGAACAGT
CGATGTGTTATTTGGCTGCACTGTTTCACATCGCCGCTCAGCATAAAGAA
ATCTCAGCGAGAAGAGAGGAACAATGGAGAGATGTAGCAGAGAGCCTGAC
AAAGACTTGTATTAGGATGTATGAACGGTTCCCCGGTGGACTGGGTGGGG
ATTCAGCAAGGTACAACGGGAAAGTATGGATCACAAAAGGTGCATATCGA
TTACAAGCTGATGTGGTTGAAGCGCTGTTTTACATGTGGCGCTCCACAAA
TGATGATTATTACAGACAAACAGCTTGGAGCATTTTCTTGAACATGAAGA
AGGAATGCGAGTTGGAAAACGGGGCGTTTACCGTATTGCGGGAATACGCA
ATTGGGAATATCACGCAGGGTGACGTGATGCCCAGCGAGTTTATTGGTTC
GACTCTGAAATTCTTGTTTCTGACGTTCACGGATACAGAAACGCTGCCGC
TTGACAAGTGGGTGTTCAATAGAGCTGGTCAGCCGCTGGTTGTAACTCCA
GGACTGGGTGCCATCAACAACTGCGCCACAGACATGATCAGATAA

protein sequence of Ggra5236.t1

>Ggra5236.t1 ID=Ggra5236.t1|Name=Ggra5236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=615bp
MRVLAKQAKHTLRFTLLRILYLLLTRTAVLAIFLSFSFALFLTSLATSPP
PAALEQASRDHVLHDKERHNCGCTRIDTCLTAVPVGSFSAPVPDLSSEHL
NEQRLNVLREAAFNSWQAYEKYAWGSDILRPRSEKGSDIFGLAATIIESI
PTLYIMRLVQPYKTARDWVDDHFNVEISQFVNVHEVTTRILGALISSYQL
TGDPMFLDKAEILAARLAPAFDTMNGVPFPLCRLAGFRNGSFDAADVCKG
TQTTQSAAAGISLEFRALAFHTLRPELRQLRCKADRAVQAVVEAGPRLLR
EHISDEIRGRSTSIDMDEDEEDEQSVLHQDSRFMTIHSYYAYMVELWQSA
VVAIGAGPAVDTTTTFTGHARGFYEYLTKAWRQGGGCEATYRYPLDASMH
MLLKRSIQETPTGDLYLRVLDSANEQNDAVVEQSMCYLAALFHIAAQHKE
ISARREEQWRDVAESLTKTCIRMYERFPGGLGGDSARYNGKVWITKGAYR
LQADVVEALFYMWRSTNDDYYRQTAWSIFLNMKKECELENGAFTVLREYA
IGNITQGDVMPSEFIGSTLKFLFLTFTDTETLPLDKWVFNRAGQPLVVTP
GLGAINNCATDMIR*

mRNA from alignment at tig00000069_pilon:856145..857989+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5236.t1 ID=Ggra5236.t1|Name=Ggra5236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1845bp|location=Sequence derived from alignment at tig00000069_pilon:856145..857989+ (Gracilaria gracilis GNS1m male)
ATGCGTGTTCTCGCGAAGCAAGCAAAGCACACTCTCCGTTTCACTCTACT
CCGTATTCTTTATCTGTTGCTCACTCGCACGGCAGTCCTTGCTATCTTCC
TATCGTTTTCATTTGCCCTTTTTCTCACCTCACTGGCAACGTCTCCTCCA
CCTGCCGCATTAGAGCAAGCGAGTCGCGATCATGTCCTCCACGATAAGGA
GCGCCACAACTGTGGATGTACTCGCATCGACACATGTTTGACAGCTGTTC
CAGTCGGTTCTTTCTCGGCACCAGTTCCAGATCTGAGCAGTGAGCATCTC
AACGAACAACGACTGAACGTGCTGCGCGAGGCTGCGTTCAACTCATGGCA
AGCATACGAGAAGTATGCATGGGGCTCCGACATACTTCGACCACGTTCGG
AAAAGGGCTCTGATATATTCGGTCTCGCGGCAACTATAATCGAATCTATT
CCTACTTTGTACATAATGCGTTTAGTGCAACCATACAAGACCGCCCGCGA
TTGGGTCGATGACCATTTCAACGTGGAAATCAGCCAGTTTGTAAACGTAC
ATGAGGTCACCACCAGAATCCTTGGAGCGCTGATTTCCTCTTACCAACTT
ACCGGTGATCCAATGTTTCTTGACAAGGCCGAGATTCTAGCCGCACGGCT
CGCTCCTGCGTTCGACACAATGAACGGCGTACCGTTTCCATTATGCCGAT
TGGCCGGTTTCCGAAATGGCTCGTTTGACGCTGCCGATGTTTGTAAGGGC
ACGCAAACCACTCAATCAGCTGCGGCTGGCATATCTTTGGAATTTCGTGC
TCTGGCGTTCCACACGCTCAGACCCGAACTAAGGCAGTTGCGATGCAAGG
CGGATCGTGCAGTGCAAGCAGTGGTCGAGGCTGGACCACGCTTGCTGAGA
GAGCATATCTCTGATGAGATCAGAGGTCGAAGCACTAGTATTGATATGGA
TGAGGATGAAGAAGACGAGCAATCAGTGTTGCATCAAGATTCTCGATTCA
TGACGATTCACTCCTATTATGCGTACATGGTGGAATTGTGGCAAAGCGCT
GTGGTTGCAATAGGTGCTGGACCTGCTGTTGATACGACTACAACGTTCAC
CGGACATGCGAGGGGATTTTACGAATATCTGACCAAGGCGTGGAGACAAG
GCGGTGGATGCGAAGCTACGTATCGTTACCCGTTGGATGCTTCTATGCAC
ATGTTGCTGAAGAGATCTATTCAGGAGACGCCCACAGGTGATCTTTACCT
TCGGGTGTTGGATAGCGCAAATGAACAGAATGATGCGGTTGTTGAACAGT
CGATGTGTTATTTGGCTGCACTGTTTCACATCGCCGCTCAGCATAAAGAA
ATCTCAGCGAGAAGAGAGGAACAATGGAGAGATGTAGCAGAGAGCCTGAC
AAAGACTTGTATTAGGATGTATGAACGGTTCCCCGGTGGACTGGGTGGGG
ATTCAGCAAGGTACAACGGGAAAGTATGGATCACAAAAGGTGCATATCGA
TTACAAGCTGATGTGGTTGAAGCGCTGTTTTACATGTGGCGCTCCACAAA
TGATGATTATTACAGACAAACAGCTTGGAGCATTTTCTTGAACATGAAGA
AGGAATGCGAGTTGGAAAACGGGGCGTTTACCGTATTGCGGGAATACGCA
ATTGGGAATATCACGCAGGGTGACGTGATGCCCAGCGAGTTTATTGGTTC
GACTCTGAAATTCTTGTTTCTGACGTTCACGGATACAGAAACGCTGCCGC
TTGACAAGTGGGTGTTCAATAGAGCTGGTCAGCCGCTGGTTGTAACTCCA
GGACTGGGTGCCATCAACAACTGCGCCACAGACATGATCAGATAA

Coding sequence (CDS) from alignment at tig00000069_pilon:856145..857989+

>Ggra5236.t1 ID=Ggra5236.t1|Name=Ggra5236.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1845bp|location=Sequence derived from alignment at tig00000069_pilon:856145..857989+ (Gracilaria gracilis GNS1m male)
ATGCGTGTTCTCGCGAAGCAAGCAAAGCACACTCTCCGTTTCACTCTACT
CCGTATTCTTTATCTGTTGCTCACTCGCACGGCAGTCCTTGCTATCTTCC
TATCGTTTTCATTTGCCCTTTTTCTCACCTCACTGGCAACGTCTCCTCCA
CCTGCCGCATTAGAGCAAGCGAGTCGCGATCATGTCCTCCACGATAAGGA
GCGCCACAACTGTGGATGTACTCGCATCGACACATGTTTGACAGCTGTTC
CAGTCGGTTCTTTCTCGGCACCAGTTCCAGATCTGAGCAGTGAGCATCTC
AACGAACAACGACTGAACGTGCTGCGCGAGGCTGCGTTCAACTCATGGCA
AGCATACGAGAAGTATGCATGGGGCTCCGACATACTTCGACCACGTTCGG
AAAAGGGCTCTGATATATTCGGTCTCGCGGCAACTATAATCGAATCTATT
CCTACTTTGTACATAATGCGTTTAGTGCAACCATACAAGACCGCCCGCGA
TTGGGTCGATGACCATTTCAACGTGGAAATCAGCCAGTTTGTAAACGTAC
ATGAGGTCACCACCAGAATCCTTGGAGCGCTGATTTCCTCTTACCAACTT
ACCGGTGATCCAATGTTTCTTGACAAGGCCGAGATTCTAGCCGCACGGCT
CGCTCCTGCGTTCGACACAATGAACGGCGTACCGTTTCCATTATGCCGAT
TGGCCGGTTTCCGAAATGGCTCGTTTGACGCTGCCGATGTTTGTAAGGGC
ACGCAAACCACTCAATCAGCTGCGGCTGGCATATCTTTGGAATTTCGTGC
TCTGGCGTTCCACACGCTCAGACCCGAACTAAGGCAGTTGCGATGCAAGG
CGGATCGTGCAGTGCAAGCAGTGGTCGAGGCTGGACCACGCTTGCTGAGA
GAGCATATCTCTGATGAGATCAGAGGTCGAAGCACTAGTATTGATATGGA
TGAGGATGAAGAAGACGAGCAATCAGTGTTGCATCAAGATTCTCGATTCA
TGACGATTCACTCCTATTATGCGTACATGGTGGAATTGTGGCAAAGCGCT
GTGGTTGCAATAGGTGCTGGACCTGCTGTTGATACGACTACAACGTTCAC
CGGACATGCGAGGGGATTTTACGAATATCTGACCAAGGCGTGGAGACAAG
GCGGTGGATGCGAAGCTACGTATCGTTACCCGTTGGATGCTTCTATGCAC
ATGTTGCTGAAGAGATCTATTCAGGAGACGCCCACAGGTGATCTTTACCT
TCGGGTGTTGGATAGCGCAAATGAACAGAATGATGCGGTTGTTGAACAGT
CGATGTGTTATTTGGCTGCACTGTTTCACATCGCCGCTCAGCATAAAGAA
ATCTCAGCGAGAAGAGAGGAACAATGGAGAGATGTAGCAGAGAGCCTGAC
AAAGACTTGTATTAGGATGTATGAACGGTTCCCCGGTGGACTGGGTGGGG
ATTCAGCAAGGTACAACGGGAAAGTATGGATCACAAAAGGTGCATATCGA
TTACAAGCTGATGTGGTTGAAGCGCTGTTTTACATGTGGCGCTCCACAAA
TGATGATTATTACAGACAAACAGCTTGGAGCATTTTCTTGAACATGAAGA
AGGAATGCGAGTTGGAAAACGGGGCGTTTACCGTATTGCGGGAATACGCA
ATTGGGAATATCACGCAGGGTGACGTGATGCCCAGCGAGTTTATTGGTTC
GACTCTGAAATTCTTGTTTCTGACGTTCACGGATACAGAAACGCTGCCGC
TTGACAAGTGGGTGTTCAATAGAGCTGGTCAGCCGCTGGTTGTAACTCCA
GGACTGGGTGCCATCAACAACTGCGCCACAGACATGATCAGATAA