Ggra5232.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5232.t1
Unique NameGgra5232.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length675
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:839977..842194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225117.XP_009379115.1
PFAMsDUF2415,WD40
Max annot lvl35493|Streptophyta
Evalue2.83e-113
EggNOG OGs28H5E@1|root,2QPI7@2759|Eukaryota,37Q2E@33090|Viridiplantae,3G90T@35493|Streptophyta,4JFCI@91835|fabids
DescriptionWD repeat-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5232Ggra5232Gracilaria gracilis GNS1m malegenetig00000069_pilon 839977..842194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1Ggra5232.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 839977..842194 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1.stop1Ggra5232.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 839977..839979 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1.CDS1Ggra5232.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 839977..840085 -
Ggra5232.t1.CDS2Ggra5232.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 840211..840364 -
Ggra5232.t1.CDS3Ggra5232.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 840433..842194 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1.exon1Ggra5232.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 839977..840085 -
Ggra5232.t1.exon2Ggra5232.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 840211..840364 -
Ggra5232.t1.exon3Ggra5232.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 840433..842194 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1.intron1Ggra5232.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 840086..840210 -
Ggra5232.t1.intron2Ggra5232.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 840365..840432 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5232.t1.start1Ggra5232.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 842192..842194 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5232.t1 ID=Ggra5232.t1|Name=Ggra5232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=675bp
MDARPPRRSQRIPPPKGTLNPPCAVFPDVVLLPSVPSLPPRAAAAPAPQT
PPRAGDDPFDYFRWCAFENAAYDDADCSIPDLSTCAPCGALPDLHCATPR
VHAPRSHCYAACHGLQSPMAARVVARGVVNPLATKRRSRRSAQHVCTCHV
PLHTAPLGGAFCPAHRAQAPWGADDADVSSDCESLLSDEDCEMQSTDRHR
CAAALKPRRKPEAVSYPIPDYSPYGINAGDITAQQAAQGMDVQGIPWDTL
QFTRDDYRATRLRENPRRDSTESAEGLTKEPKKDARFYDFFRNTRKVKCN
IVHFQLRNLAWATSKHDVFVMHRGVIVHWDSCAQRKSKVLDLSGSTTSGP
NSLGMLVQISTLIAKDDLVIAGGFFGEMIAKNLKTGTIVHNKRITYDDNA
ITNAIDIYDGNIITSNNDCYVRTFDMNTFERKSAFRFQKPVNHATRRPFG
KMIAVAGDDKPIQVIDGDSGERITQLHGHEDFSFATAWHPSGRLLATGSQ
DQTCRVWDIRNMSQSVSVLGARLGAVRSLRFSSCGQHMFMAEARDYVHIF
DVNRGEFDTCQEIDLFGEIAGIALTPCSEGLYIAVSDLRTSLIADTQTLY
NCMYRNVIKDLFNLSFFAVDGWQRALSCLPPIAQAQSQAWESENQSHNLQ
ITATGDYFSVELHVDHEFVPLHQK*
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spliced messenger RNA

>Ggra5232.t1 ID=Ggra5232.t1|Name=Ggra5232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:839977..842194- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCCGACCTCCGCGCCGCTCCCAGCGCATCCCTCCCCCAAAGGG
CACACTCAATCCGCCGTGCGCCGTCTTCCCGGATGTCGTACTCCTCCCCA
GTGTGCCCTCGCTACCGCCACGCGCCGCCGCCGCGCCCGCCCCGCAGACG
CCGCCGCGAGCCGGCGACGACCCGTTCGATTACTTCCGCTGGTGCGCGTT
TGAGAACGCCGCGTACGACGACGCTGACTGCTCCATCCCCGATCTCTCCA
CGTGCGCGCCTTGCGGCGCGTTGCCCGACCTGCATTGCGCCACGCCGCGC
GTGCACGCGCCGCGCTCGCATTGCTACGCCGCCTGCCACGGCTTGCAGTC
GCCCATGGCGGCGCGCGTTGTGGCGCGCGGCGTCGTCAATCCGCTCGCCA
CCAAGAGGCGCTCCCGACGCTCTGCCCAGCACGTTTGTACTTGTCATGTG
CCGCTGCATACCGCCCCTCTGGGCGGCGCTTTCTGTCCGGCGCACCGCGC
GCAGGCGCCTTGGGGCGCCGATGACGCCGATGTGAGCTCCGATTGTGAGT
CGCTGCTTTCGGACGAGGACTGTGAAATGCAGTCTACTGATCGCCATCGC
TGTGCTGCTGCTTTAAAGCCGCGTCGTAAGCCAGAAGCTGTTTCCTACCC
TATCCCCGACTATAGTCCGTATGGCATTAACGCCGGCGATATCACTGCTC
AGCAGGCGGCGCAAGGCATGGATGTGCAGGGCATTCCTTGGGATACGCTT
CAATTCACTCGAGATGACTATCGCGCTACACGTCTTCGCGAAAACCCACG
CCGCGACTCAACGGAGAGCGCTGAGGGTCTCACGAAGGAGCCCAAGAAGG
ACGCACGTTTCTATGACTTCTTCAGGAATACTCGAAAGGTCAAGTGTAAC
ATTGTTCATTTTCAGCTGCGCAACCTTGCGTGGGCTACTAGCAAGCATGA
TGTATTCGTCATGCATCGCGGTGTAATCGTGCACTGGGATTCTTGTGCAC
AGCGCAAGTCAAAGGTGCTTGACCTTAGCGGCTCCACTACTTCTGGACCC
AACAGTCTCGGCATGTTGGTGCAGATCTCTACACTGATCGCAAAGGATGA
CTTGGTCATCGCAGGCGGCTTCTTCGGAGAGATGATTGCAAAGAATCTAA
AGACTGGTACCATCGTTCACAACAAGAGAATTACCTACGACGACAATGCA
ATCACCAATGCAATTGACATATATGACGGCAACATCATTACAAGCAATAA
CGATTGTTACGTCCGAACTTTCGATATGAATACTTTTGAACGCAAATCCG
CCTTCCGCTTCCAAAAGCCCGTCAACCACGCTACTCGTCGACCGTTTGGC
AAGATGATTGCCGTTGCAGGCGATGACAAGCCTATCCAAGTTATTGATGG
CGACAGCGGTGAACGAATCACCCAGCTGCATGGGCATGAGGATTTCTCAT
TCGCAACTGCCTGGCACCCCAGCGGAAGGCTACTAGCAACCGGTTCGCAG
GACCAGACCTGCCGTGTATGGGATATTCGTAATATGTCGCAATCTGTCAG
CGTTCTCGGCGCTCGTCTTGGGGCTGTTCGCTCGCTGCGTTTTTCCTCGT
GTGGGCAGCATATGTTTATGGCGGAGGCGCGAGATTACGTGCACATCTTC
GACGTGAACAGAGGCGAATTTGATACGTGCCAGGAGATCGACCTCTTTGG
AGAAATTGCTGGCATTGCACTGACTCCGTGTTCTGAGGGTTTGTACATTG
CCGTCAGTGACCTTCGAACCAGCCTTATTGCTGATACGCAAACGCTTTAT
AATTGCATGTACAGAAATGTAATAAAAGATCTCTTCAACCTGAGTTTCTT
CGCTGTAGATGGATGGCAACGTGCTCTTTCATGCCTTCCTCCAATAGCAC
AAGCTCAAAGCCAAGCTTGGGAATCGGAAAACCAGTCCCACAACTTGCAG
ATAACTGCCACTGGTGATTATTTCAGTGTGGAACTACATGTCGATCACGA
GTTTGTCCCGCTTCACCAGAAATAG
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protein sequence of Ggra5232.t1

>Ggra5232.t1 ID=Ggra5232.t1|Name=Ggra5232.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=675bp
MDARPPRRSQRIPPPKGTLNPPCAVFPDVVLLPSVPSLPPRAAAAPAPQT
PPRAGDDPFDYFRWCAFENAAYDDADCSIPDLSTCAPCGALPDLHCATPR
VHAPRSHCYAACHGLQSPMAARVVARGVVNPLATKRRSRRSAQHVCTCHV
PLHTAPLGGAFCPAHRAQAPWGADDADVSSDCESLLSDEDCEMQSTDRHR
CAAALKPRRKPEAVSYPIPDYSPYGINAGDITAQQAAQGMDVQGIPWDTL
QFTRDDYRATRLRENPRRDSTESAEGLTKEPKKDARFYDFFRNTRKVKCN
IVHFQLRNLAWATSKHDVFVMHRGVIVHWDSCAQRKSKVLDLSGSTTSGP
NSLGMLVQISTLIAKDDLVIAGGFFGEMIAKNLKTGTIVHNKRITYDDNA
ITNAIDIYDGNIITSNNDCYVRTFDMNTFERKSAFRFQKPVNHATRRPFG
KMIAVAGDDKPIQVIDGDSGERITQLHGHEDFSFATAWHPSGRLLATGSQ
DQTCRVWDIRNMSQSVSVLGARLGAVRSLRFSSCGQHMFMAEARDYVHIF
DVNRGEFDTCQEIDLFGEIAGIALTPCSEGLYIAVSDLRTSLIADTQTLY
NCMYRNVIKDLFNLSFFAVDGWQRALSCLPPIAQAQSQAWESENQSHNLQ
ITATGDYFSVELHVDHEFVPLHQK*
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mRNA from alignment at tig00000069_pilon:839977..842194-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5232.t1 ID=Ggra5232.t1|Name=Ggra5232.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2218bp|location=Sequence derived from alignment at tig00000069_pilon:839977..842194- (Gracilaria gracilis GNS1m male)
ATGGACGCCCGACCTCCGCGCCGCTCCCAGCGCATCCCTCCCCCAAAGGG
CACACTCAATCCGCCGTGCGCCGTCTTCCCGGATGTCGTACTCCTCCCCA
GTGTGCCCTCGCTACCGCCACGCGCCGCCGCCGCGCCCGCCCCGCAGACG
CCGCCGCGAGCCGGCGACGACCCGTTCGATTACTTCCGCTGGTGCGCGTT
TGAGAACGCCGCGTACGACGACGCTGACTGCTCCATCCCCGATCTCTCCA
CGTGCGCGCCTTGCGGCGCGTTGCCCGACCTGCATTGCGCCACGCCGCGC
GTGCACGCGCCGCGCTCGCATTGCTACGCCGCCTGCCACGGCTTGCAGTC
GCCCATGGCGGCGCGCGTTGTGGCGCGCGGCGTCGTCAATCCGCTCGCCA
CCAAGAGGCGCTCCCGACGCTCTGCCCAGCACGTTTGTACTTGTCATGTG
CCGCTGCATACCGCCCCTCTGGGCGGCGCTTTCTGTCCGGCGCACCGCGC
GCAGGCGCCTTGGGGCGCCGATGACGCCGATGTGAGCTCCGATTGTGAGT
CGCTGCTTTCGGACGAGGACTGTGAAATGCAGTCTACTGATCGCCATCGC
TGTGCTGCTGCTTTAAAGCCGCGTCGTAAGCCAGAAGCTGTTTCCTACCC
TATCCCCGACTATAGTCCGTATGGCATTAACGCCGGCGATATCACTGCTC
AGCAGGCGGCGCAAGGCATGGATGTGCAGGGCATTCCTTGGGATACGCTT
CAATTCACTCGAGATGACTATCGCGCTACACGTCTTCGCGAAAACCCACG
CCGCGACTCAACGGAGAGCGCTGAGGGTCTCACGAAGGAGCCCAAGAAGG
ACGCACGTTTCTATGACTTCTTCAGGAATACTCGAAAGGTCAAGTGTAAC
ATTGTTCATTTTCAGCTGCGCAACCTTGCGTGGGCTACTAGCAAGCATGA
TGTATTCGTCATGCATCGCGGTGTAATCGTGCACTGGGATTCTTGTGCAC
AGCGCAAGTCAAAGGTGCTTGACCTTAGCGGCTCCACTACTTCTGGACCC
AACAGTCTCGGCATGTTGGTGCAGATCTCTACACTGATCGCAAAGGATGA
CTTGGTCATCGCAGGCGGCTTCTTCGGAGAGATGATTGCAAAGAATCTAA
AGACTGGTACCATCGTTCACAACAAGAGAATTACCTACGACGACAATGCA
ATCACCAATGCAATTGACATATATGACGGCAACATCATTACAAGCAATAA
CGATTGTTACGTCCGAACTTTCGATATGAATACTTTTGAACGCAAATCCG
CCTTCCGCTTCCAAAAGCCCGTCAACCACGCTACTCGTCGACCGTTTGGC
AAGATGATTGCCGTTGCAGGCGATGACAAGCCTATCCAAGTTATTGATGG
CGACAGCGGTGAACGAATCACCCAGCTGCATGGGCATGAGGATTTCTCAT
TCGCAACTGCCTGGCACCCCAGCGGAAGGCTACTAGCAACCGGTTCGCAG
GACCAGACCTGCCGTGTATGGGATATTCGTAATATGTCGCAATCTGTCAG
CGTTCTCGGCGCTCGTCTTGGGGCTGTTCGCTCGCTGCGTTTTTCCTCGT
GTGGGCAGCATATGTTTATGGCGGAGGCGCGAGATTACGTGCACATCTTC
GACGTGAACAGAGGCGAATTTGATACGTGCCAGGAGATCGACCTCTTTGG
AGAAATTGCTGGCATTGCACTGACTCCGTGTTCTGAGGGTTTGTACATTG
CCGTCAGTGACCGTACGTACTCAAGCCTTTTGGAATATGAACGAAGGAAT
ACATCCCTCGTTTCTGACTTGCTACTCTAGTTCGAACCAGCCTTATTGCT
GATACGCAAACGCTTTATAATTGCATGTACAGAAATGTAATAAAAGATCT
CTTCAACCTGAGTTTCTTCGCTGTAGATGGATGGCAACGTGCTCTTTCAT
GCCTTCCTCCAATAGCACAAGCTCAAAGCCAAGCGTCTGTATTCACTTCA
CAACAGTTAATGAATGTCGATGATGCCTGGAATCTGGAAACTTACGAAGG
TACACGTACAGGTGTCTGCGTTAATTTGCCGAAACCTGATCTCGGCCCAC
ATGGCCCAGTTGGGAATCGGAAAACCAGTCCCACAACTTGCAGATAACTG
CCACTGGTGATTATTTCAGTGTGGAACTACATGTCGATCACGAGTTTGTC
CCGCTTCACCAGAAATAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:839977..842194-

>Ggra5232.t1 ID=Ggra5232.t1|Name=Ggra5232.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2025bp|location=Sequence derived from alignment at tig00000069_pilon:839977..842194- (Gracilaria gracilis GNS1m male)
ATGGACGCCCGACCTCCGCGCCGCTCCCAGCGCATCCCTCCCCCAAAGGG
CACACTCAATCCGCCGTGCGCCGTCTTCCCGGATGTCGTACTCCTCCCCA
GTGTGCCCTCGCTACCGCCACGCGCCGCCGCCGCGCCCGCCCCGCAGACG
CCGCCGCGAGCCGGCGACGACCCGTTCGATTACTTCCGCTGGTGCGCGTT
TGAGAACGCCGCGTACGACGACGCTGACTGCTCCATCCCCGATCTCTCCA
CGTGCGCGCCTTGCGGCGCGTTGCCCGACCTGCATTGCGCCACGCCGCGC
GTGCACGCGCCGCGCTCGCATTGCTACGCCGCCTGCCACGGCTTGCAGTC
GCCCATGGCGGCGCGCGTTGTGGCGCGCGGCGTCGTCAATCCGCTCGCCA
CCAAGAGGCGCTCCCGACGCTCTGCCCAGCACGTTTGTACTTGTCATGTG
CCGCTGCATACCGCCCCTCTGGGCGGCGCTTTCTGTCCGGCGCACCGCGC
GCAGGCGCCTTGGGGCGCCGATGACGCCGATGTGAGCTCCGATTGTGAGT
CGCTGCTTTCGGACGAGGACTGTGAAATGCAGTCTACTGATCGCCATCGC
TGTGCTGCTGCTTTAAAGCCGCGTCGTAAGCCAGAAGCTGTTTCCTACCC
TATCCCCGACTATAGTCCGTATGGCATTAACGCCGGCGATATCACTGCTC
AGCAGGCGGCGCAAGGCATGGATGTGCAGGGCATTCCTTGGGATACGCTT
CAATTCACTCGAGATGACTATCGCGCTACACGTCTTCGCGAAAACCCACG
CCGCGACTCAACGGAGAGCGCTGAGGGTCTCACGAAGGAGCCCAAGAAGG
ACGCACGTTTCTATGACTTCTTCAGGAATACTCGAAAGGTCAAGTGTAAC
ATTGTTCATTTTCAGCTGCGCAACCTTGCGTGGGCTACTAGCAAGCATGA
TGTATTCGTCATGCATCGCGGTGTAATCGTGCACTGGGATTCTTGTGCAC
AGCGCAAGTCAAAGGTGCTTGACCTTAGCGGCTCCACTACTTCTGGACCC
AACAGTCTCGGCATGTTGGTGCAGATCTCTACACTGATCGCAAAGGATGA
CTTGGTCATCGCAGGCGGCTTCTTCGGAGAGATGATTGCAAAGAATCTAA
AGACTGGTACCATCGTTCACAACAAGAGAATTACCTACGACGACAATGCA
ATCACCAATGCAATTGACATATATGACGGCAACATCATTACAAGCAATAA
CGATTGTTACGTCCGAACTTTCGATATGAATACTTTTGAACGCAAATCCG
CCTTCCGCTTCCAAAAGCCCGTCAACCACGCTACTCGTCGACCGTTTGGC
AAGATGATTGCCGTTGCAGGCGATGACAAGCCTATCCAAGTTATTGATGG
CGACAGCGGTGAACGAATCACCCAGCTGCATGGGCATGAGGATTTCTCAT
TCGCAACTGCCTGGCACCCCAGCGGAAGGCTACTAGCAACCGGTTCGCAG
GACCAGACCTGCCGTGTATGGGATATTCGTAATATGTCGCAATCTGTCAG
CGTTCTCGGCGCTCGTCTTGGGGCTGTTCGCTCGCTGCGTTTTTCCTCGT
GTGGGCAGCATATGTTTATGGCGGAGGCGCGAGATTACGTGCACATCTTC
GACGTGAACAGAGGCGAATTTGATACGTGCCAGGAGATCGACCTCTTTGG
AGAAATTGCTGGCATTGCACTGACTCCGTGTTCTGAGGGTTTGTACATTG
CCGTCAGTGACCTTCGAACCAGCCTTATTGCTGATACGCAAACGCTTTAT
AATTGCATGTACAGAAATGTAATAAAAGATCTCTTCAACCTGAGTTTCTT
CGCTGTAGATGGATGGCAACGTGCTCTTTCATGCCTTCCTCCAATAGCAC
AAGCTCAAAGCCAAGCTTGGGAATCGGAAAACCAGTCCCACAACTTGCAG
ATAACTGCCACTGGTGATTATTTCAGTGTGGAACTACATGTCGATCACGA
GTTTGTCCCGCTTCACCAGAAATAG
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