Ggra5229.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5229.t1
Unique NameGgra5229.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:819334..820779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT024CT
Preferred nameAS3MT
PFAMsMethyltransf_31
Max annot lvl2759|Eukaryota
KEGG koko:K07755
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006479,GO:0006805,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008213,GO:0008276,GO:0008757,GO:0009404,GO:0009410,GO:0009987,GO:0016740,GO:0016741,GO:0018872,GO:0019538,GO:0019748,GO:0019752,GO:0030791,GO:0030792,GO:0032259,GO:0032787,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0043414,GO:0043436,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046685,GO:0050896,GO:0051716,GO:0070887,GO:0071466,GO:0071704,GO:0140096,GO:1901564
Evalue5.31e-122
EggNOG OGs2CMHQ@1|root,2QQD6@2759|Eukaryota
EC2.1.1.137
Descriptionarsonoacetate metabolic process
COG categoryS
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5229Ggra5229Gracilaria gracilis GNS1m malegenetig00000069_pilon 819334..820779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5229.t1.stop1Ggra5229.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 819334..819336 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5229.t1.CDS1Ggra5229.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 819334..820779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5229.t1.exon1Ggra5229.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 819334..820779 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5229.t1.start1Ggra5229.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 820777..820779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5229.t1Ggra5229.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 819334..820779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5229.t1 ID=Ggra5229.t1|Name=Ggra5229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp
MEPEKQHQSVSKYYSSTLSSTSDLKTSACCPIDAVPESHRSIIARLHPEV
TSRFYGCGSPIPSHLKGCAVLDLGCGTGRDVYLSSALVGEHGSVIGVDMT
PEQLEIASRHKQYHATQFFGPDAQSNVQFRHGFIEDLRSANIEDASLDVV
ISNCVCNLSPDKKAVFSEVSRVLKQGGEFYFSDVYADRRLTKEAASHEVL
VGECLGGALYVQDFHTIMNEVGFPDVRIVSAAPIELQDPELRKLVPDVTF
YSLTIRAFKVEALEATREDYGQNATYVSCGSGLKFDIDNTFNKDVPTPID
SNTAAILKQSRYKRLFTVTERIEHRGAFVRTQESSSDILDIRCFRPLPLL
GRSQEKRNSTRCPPAPLVSDVSIADNSPIMKKSSCCPSGSASLPASTTLK
QDAESLEDPSSCCNRSKSVPNETSKPDAQKEASCSPSNTQQAKPDWKKEA
NGTEASSCWQPKTKDEEIKSSTCRPTSDGCC*
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spliced messenger RNA

>Ggra5229.t1 ID=Ggra5229.t1|Name=Ggra5229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000069_pilon:819334..820779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGAGAAGCAACATCAATCAGTCTCAAAGTACTACTCCTCCAC
TCTGTCTTCCACCTCCGATCTCAAGACCTCTGCATGCTGTCCCATCGACG
CCGTGCCGGAATCGCATCGCTCCATCATTGCCCGTCTTCACCCCGAAGTA
ACCTCTCGCTTTTATGGCTGTGGCTCGCCGATTCCGTCACACTTGAAGGG
TTGCGCGGTACTGGACCTCGGCTGTGGTACTGGTCGTGATGTTTACCTCT
CATCCGCGCTTGTTGGTGAACATGGATCCGTCATTGGCGTCGATATGACT
CCTGAGCAACTTGAAATCGCAAGTCGTCACAAGCAATATCATGCAACTCA
GTTCTTTGGACCTGATGCTCAATCTAACGTCCAATTCCGTCATGGTTTTA
TTGAAGATTTGCGCTCGGCAAACATTGAAGATGCATCGCTTGACGTCGTT
ATTTCCAACTGCGTTTGTAATTTAAGTCCCGATAAGAAAGCTGTGTTCTC
TGAAGTGTCTCGTGTTCTGAAGCAAGGAGGAGAGTTTTATTTTTCGGACG
TGTATGCGGATCGTCGTTTAACGAAAGAAGCTGCCTCACATGAAGTTTTG
GTCGGCGAGTGCCTGGGTGGGGCTTTATACGTTCAAGACTTTCATACAAT
TATGAATGAAGTTGGATTCCCAGATGTGCGAATCGTCTCAGCTGCCCCAA
TTGAACTGCAAGACCCGGAACTTCGCAAGCTTGTACCGGATGTTACTTTC
TATTCGTTAACAATTCGTGCTTTTAAGGTTGAAGCTTTGGAAGCTACGCG
TGAGGATTACGGACAGAATGCAACATATGTGTCATGTGGTAGCGGTCTGA
AGTTTGACATAGATAACACCTTCAACAAGGATGTACCGACACCCATTGAT
TCGAATACTGCGGCCATATTGAAACAATCAAGATACAAGCGCTTGTTCAC
AGTTACTGAACGAATCGAGCATCGTGGTGCCTTCGTGCGGACACAGGAGA
GTTCATCTGATATACTAGATATAAGATGCTTCCGCCCCTTACCACTCCTG
GGACGTTCTCAGGAAAAAAGGAACAGCACTCGCTGCCCTCCGGCACCATT
AGTTTCTGATGTGAGTATAGCAGACAACTCTCCCATAATGAAGAAATCCT
CATGCTGTCCAAGTGGCAGTGCAAGCCTTCCTGCTTCTACAACGCTCAAG
CAGGACGCGGAATCGCTGGAAGATCCTTCTTCCTGTTGCAACAGGAGCAA
GTCGGTCCCGAATGAAACTAGCAAACCTGATGCTCAGAAGGAAGCATCTT
GTAGTCCTTCCAATACGCAACAGGCGAAACCTGATTGGAAAAAGGAAGCG
AACGGGACGGAAGCGAGCTCCTGCTGGCAGCCAAAGACGAAGGACGAAGA
GATCAAATCTTCTACCTGCCGTCCAACTTCTGATGGCTGTTGTTAG
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protein sequence of Ggra5229.t1

>Ggra5229.t1 ID=Ggra5229.t1|Name=Ggra5229.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MEPEKQHQSVSKYYSSTLSSTSDLKTSACCPIDAVPESHRSIIARLHPEV
TSRFYGCGSPIPSHLKGCAVLDLGCGTGRDVYLSSALVGEHGSVIGVDMT
PEQLEIASRHKQYHATQFFGPDAQSNVQFRHGFIEDLRSANIEDASLDVV
ISNCVCNLSPDKKAVFSEVSRVLKQGGEFYFSDVYADRRLTKEAASHEVL
VGECLGGALYVQDFHTIMNEVGFPDVRIVSAAPIELQDPELRKLVPDVTF
YSLTIRAFKVEALEATREDYGQNATYVSCGSGLKFDIDNTFNKDVPTPID
SNTAAILKQSRYKRLFTVTERIEHRGAFVRTQESSSDILDIRCFRPLPLL
GRSQEKRNSTRCPPAPLVSDVSIADNSPIMKKSSCCPSGSASLPASTTLK
QDAESLEDPSSCCNRSKSVPNETSKPDAQKEASCSPSNTQQAKPDWKKEA
NGTEASSCWQPKTKDEEIKSSTCRPTSDGCC*
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mRNA from alignment at tig00000069_pilon:819334..820779-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5229.t1 ID=Ggra5229.t1|Name=Ggra5229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000069_pilon:819334..820779- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGAAGCAACATCAATCAGTCTCAAAGTACTACTCCTCCAC
TCTGTCTTCCACCTCCGATCTCAAGACCTCTGCATGCTGTCCCATCGACG
CCGTGCCGGAATCGCATCGCTCCATCATTGCCCGTCTTCACCCCGAAGTA
ACCTCTCGCTTTTATGGCTGTGGCTCGCCGATTCCGTCACACTTGAAGGG
TTGCGCGGTACTGGACCTCGGCTGTGGTACTGGTCGTGATGTTTACCTCT
CATCCGCGCTTGTTGGTGAACATGGATCCGTCATTGGCGTCGATATGACT
CCTGAGCAACTTGAAATCGCAAGTCGTCACAAGCAATATCATGCAACTCA
GTTCTTTGGACCTGATGCTCAATCTAACGTCCAATTCCGTCATGGTTTTA
TTGAAGATTTGCGCTCGGCAAACATTGAAGATGCATCGCTTGACGTCGTT
ATTTCCAACTGCGTTTGTAATTTAAGTCCCGATAAGAAAGCTGTGTTCTC
TGAAGTGTCTCGTGTTCTGAAGCAAGGAGGAGAGTTTTATTTTTCGGACG
TGTATGCGGATCGTCGTTTAACGAAAGAAGCTGCCTCACATGAAGTTTTG
GTCGGCGAGTGCCTGGGTGGGGCTTTATACGTTCAAGACTTTCATACAAT
TATGAATGAAGTTGGATTCCCAGATGTGCGAATCGTCTCAGCTGCCCCAA
TTGAACTGCAAGACCCGGAACTTCGCAAGCTTGTACCGGATGTTACTTTC
TATTCGTTAACAATTCGTGCTTTTAAGGTTGAAGCTTTGGAAGCTACGCG
TGAGGATTACGGACAGAATGCAACATATGTGTCATGTGGTAGCGGTCTGA
AGTTTGACATAGATAACACCTTCAACAAGGATGTACCGACACCCATTGAT
TCGAATACTGCGGCCATATTGAAACAATCAAGATACAAGCGCTTGTTCAC
AGTTACTGAACGAATCGAGCATCGTGGTGCCTTCGTGCGGACACAGGAGA
GTTCATCTGATATACTAGATATAAGATGCTTCCGCCCCTTACCACTCCTG
GGACGTTCTCAGGAAAAAAGGAACAGCACTCGCTGCCCTCCGGCACCATT
AGTTTCTGATGTGAGTATAGCAGACAACTCTCCCATAATGAAGAAATCCT
CATGCTGTCCAAGTGGCAGTGCAAGCCTTCCTGCTTCTACAACGCTCAAG
CAGGACGCGGAATCGCTGGAAGATCCTTCTTCCTGTTGCAACAGGAGCAA
GTCGGTCCCGAATGAAACTAGCAAACCTGATGCTCAGAAGGAAGCATCTT
GTAGTCCTTCCAATACGCAACAGGCGAAACCTGATTGGAAAAAGGAAGCG
AACGGGACGGAAGCGAGCTCCTGCTGGCAGCCAAAGACGAAGGACGAAGA
GATCAAATCTTCTACCTGCCGTCCAACTTCTGATGGCTGTTGTTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:819334..820779-

>Ggra5229.t1 ID=Ggra5229.t1|Name=Ggra5229.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000069_pilon:819334..820779- (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGAAGCAACATCAATCAGTCTCAAAGTACTACTCCTCCAC
TCTGTCTTCCACCTCCGATCTCAAGACCTCTGCATGCTGTCCCATCGACG
CCGTGCCGGAATCGCATCGCTCCATCATTGCCCGTCTTCACCCCGAAGTA
ACCTCTCGCTTTTATGGCTGTGGCTCGCCGATTCCGTCACACTTGAAGGG
TTGCGCGGTACTGGACCTCGGCTGTGGTACTGGTCGTGATGTTTACCTCT
CATCCGCGCTTGTTGGTGAACATGGATCCGTCATTGGCGTCGATATGACT
CCTGAGCAACTTGAAATCGCAAGTCGTCACAAGCAATATCATGCAACTCA
GTTCTTTGGACCTGATGCTCAATCTAACGTCCAATTCCGTCATGGTTTTA
TTGAAGATTTGCGCTCGGCAAACATTGAAGATGCATCGCTTGACGTCGTT
ATTTCCAACTGCGTTTGTAATTTAAGTCCCGATAAGAAAGCTGTGTTCTC
TGAAGTGTCTCGTGTTCTGAAGCAAGGAGGAGAGTTTTATTTTTCGGACG
TGTATGCGGATCGTCGTTTAACGAAAGAAGCTGCCTCACATGAAGTTTTG
GTCGGCGAGTGCCTGGGTGGGGCTTTATACGTTCAAGACTTTCATACAAT
TATGAATGAAGTTGGATTCCCAGATGTGCGAATCGTCTCAGCTGCCCCAA
TTGAACTGCAAGACCCGGAACTTCGCAAGCTTGTACCGGATGTTACTTTC
TATTCGTTAACAATTCGTGCTTTTAAGGTTGAAGCTTTGGAAGCTACGCG
TGAGGATTACGGACAGAATGCAACATATGTGTCATGTGGTAGCGGTCTGA
AGTTTGACATAGATAACACCTTCAACAAGGATGTACCGACACCCATTGAT
TCGAATACTGCGGCCATATTGAAACAATCAAGATACAAGCGCTTGTTCAC
AGTTACTGAACGAATCGAGCATCGTGGTGCCTTCGTGCGGACACAGGAGA
GTTCATCTGATATACTAGATATAAGATGCTTCCGCCCCTTACCACTCCTG
GGACGTTCTCAGGAAAAAAGGAACAGCACTCGCTGCCCTCCGGCACCATT
AGTTTCTGATGTGAGTATAGCAGACAACTCTCCCATAATGAAGAAATCCT
CATGCTGTCCAAGTGGCAGTGCAAGCCTTCCTGCTTCTACAACGCTCAAG
CAGGACGCGGAATCGCTGGAAGATCCTTCTTCCTGTTGCAACAGGAGCAA
GTCGGTCCCGAATGAAACTAGCAAACCTGATGCTCAGAAGGAAGCATCTT
GTAGTCCTTCCAATACGCAACAGGCGAAACCTGATTGGAAAAAGGAAGCG
AACGGGACGGAAGCGAGCTCCTGCTGGCAGCCAAAGACGAAGGACGAAGA
GATCAAATCTTCTACCTGCCGTCCAACTTCTGATGGCTGTTGTTAG
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