Ggra5228.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5228.t1
Unique Name	Ggra5228.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:817972..819012 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S71_304V6.1
PFAMs	Abhydrolase_1
Max annot lvl	35493\|Streptophyta
Evalue	2.9e-44
EggNOG OGs	COG0204@1\|root,2QSK0@2759\|Eukaryota,37PD2@33090\|Viridiplantae,3GNU1@35493\|Streptophyta
Description	Phosphate acyltransferases
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5228	Ggra5228	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 817168..819012 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5228.t1.start1	Ggra5228.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 817972..817974 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5228.t1.CDS1	Ggra5228.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 817972..819012 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5228.t1.exon1	Ggra5228.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 817972..819012 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5228.t1.stop1	Ggra5228.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 819010..819012 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5228.t1	Ggra5228.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 817972..819012 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:817972..819012+
coding sequence from alignment at tig00000069_pilon:817972..819012+

mRNA sequence

>Ggra5228.t1 ID=Ggra5228.t1|Name=Ggra5228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
LSDLIASDEQEKQRSNSNAHDGARVFSGNGEATPFQSEKGYEYNEAIEEG
RKVFEPWRRAISPKVVGKANVEDALRMSQCSRGNRPVLFVGNHGMLGIMD
TSLIYMEIHDLLNGDRLRPLADRIHFGLYSKVSNGRWDNFIKTLGAVRAS
PLSFYRLLASGDRILLFPGGAREVCRRRGERNQIFWDDKLDFLRPAAKFN
ALIVPFSAVGADDAVNLLLDGQEMQKLPVLGPAIRRFLEGNDLSVANVMP
LTTTPPRLDRFYFKFHEAIDTEDIDSSDIDACGEVYRRVKEVVEHGISQL
ITEREKDPHRTWQSRTVGTFVKQVSKVPTPGDALRSLLDIMPGFDL*

spliced messenger RNA

>Ggra5228.t1 ID=Ggra5228.t1|Name=Ggra5228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:817972..819012+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCTGATCTCATTGCCTCGGATGAACAAGAAAAACAAAGAAGCAATTC
AAATGCCCACGATGGAGCTCGTGTTTTCTCGGGAAACGGCGAAGCTACGC
CTTTCCAGTCGGAGAAAGGTTATGAGTACAATGAAGCCATTGAAGAAGGT
AGAAAAGTGTTTGAGCCCTGGAGGAGAGCGATTTCTCCTAAAGTTGTGGG
CAAGGCCAACGTTGAGGATGCTCTGAGAATGTCACAGTGCAGTAGAGGGA
ACCGGCCAGTCCTCTTCGTGGGCAACCATGGCATGCTCGGTATTATGGAT
ACTTCACTTATTTACATGGAGATACATGACCTCCTTAACGGTGACAGACT
TCGACCGTTGGCCGATCGAATTCATTTTGGTCTCTACTCCAAGGTTTCAA
ACGGAAGGTGGGATAACTTTATAAAGACGCTCGGGGCCGTAAGGGCAAGC
CCTTTGAGTTTCTACCGTCTGCTGGCATCGGGTGATAGGATTTTGTTGTT
TCCTGGGGGGGCCAGAGAAGTTTGTCGTCGCCGAGGGGAGCGAAATCAGA
TCTTTTGGGACGACAAGCTGGACTTCTTACGGCCCGCTGCGAAGTTTAAC
GCACTCATAGTGCCCTTCAGTGCCGTTGGGGCTGACGATGCAGTGAATCT
CCTACTTGACGGGCAAGAGATGCAGAAACTTCCGGTACTCGGCCCGGCAA
TTCGTCGATTTCTGGAGGGCAATGATCTATCTGTGGCAAATGTTATGCCG
CTTACCACAACACCACCACGGCTCGACCGCTTTTACTTTAAATTCCATGA
AGCAATTGATACCGAAGATATAGACTCTTCGGATATTGATGCATGCGGAG
AAGTTTACAGAAGAGTTAAAGAGGTAGTCGAACATGGTATCAGCCAACTC
ATCACAGAACGAGAGAAAGACCCGCACAGGACATGGCAATCACGCACTGT
GGGTACATTTGTGAAGCAAGTGAGCAAAGTTCCAACTCCAGGAGATGCCC
TGAGGTCTCTCCTAGATATCATGCCTGGTTTTGATTTATAA

protein sequence of Ggra5228.t1

>Ggra5228.t1 ID=Ggra5228.t1|Name=Ggra5228.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
LSDLIASDEQEKQRSNSNAHDGARVFSGNGEATPFQSEKGYEYNEAIEEG
RKVFEPWRRAISPKVVGKANVEDALRMSQCSRGNRPVLFVGNHGMLGIMD
TSLIYMEIHDLLNGDRLRPLADRIHFGLYSKVSNGRWDNFIKTLGAVRAS
PLSFYRLLASGDRILLFPGGAREVCRRRGERNQIFWDDKLDFLRPAAKFN
ALIVPFSAVGADDAVNLLLDGQEMQKLPVLGPAIRRFLEGNDLSVANVMP
LTTTPPRLDRFYFKFHEAIDTEDIDSSDIDACGEVYRRVKEVVEHGISQL
ITEREKDPHRTWQSRTVGTFVKQVSKVPTPGDALRSLLDIMPGFDL*

mRNA from alignment at tig00000069_pilon:817972..819012+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5228.t1 ID=Ggra5228.t1|Name=Ggra5228.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:817972..819012+ (Gracilaria gracilis GNS1m male)
TTGTCTGATCTCATTGCCTCGGATGAACAAGAAAAACAAAGAAGCAATTC
AAATGCCCACGATGGAGCTCGTGTTTTCTCGGGAAACGGCGAAGCTACGC
CTTTCCAGTCGGAGAAAGGTTATGAGTACAATGAAGCCATTGAAGAAGGT
AGAAAAGTGTTTGAGCCCTGGAGGAGAGCGATTTCTCCTAAAGTTGTGGG
CAAGGCCAACGTTGAGGATGCTCTGAGAATGTCACAGTGCAGTAGAGGGA
ACCGGCCAGTCCTCTTCGTGGGCAACCATGGCATGCTCGGTATTATGGAT
ACTTCACTTATTTACATGGAGATACATGACCTCCTTAACGGTGACAGACT
TCGACCGTTGGCCGATCGAATTCATTTTGGTCTCTACTCCAAGGTTTCAA
ACGGAAGGTGGGATAACTTTATAAAGACGCTCGGGGCCGTAAGGGCAAGC
CCTTTGAGTTTCTACCGTCTGCTGGCATCGGGTGATAGGATTTTGTTGTT
TCCTGGGGGGGCCAGAGAAGTTTGTCGTCGCCGAGGGGAGCGAAATCAGA
TCTTTTGGGACGACAAGCTGGACTTCTTACGGCCCGCTGCGAAGTTTAAC
GCACTCATAGTGCCCTTCAGTGCCGTTGGGGCTGACGATGCAGTGAATCT
CCTACTTGACGGGCAAGAGATGCAGAAACTTCCGGTACTCGGCCCGGCAA
TTCGTCGATTTCTGGAGGGCAATGATCTATCTGTGGCAAATGTTATGCCG
CTTACCACAACACCACCACGGCTCGACCGCTTTTACTTTAAATTCCATGA
AGCAATTGATACCGAAGATATAGACTCTTCGGATATTGATGCATGCGGAG
AAGTTTACAGAAGAGTTAAAGAGGTAGTCGAACATGGTATCAGCCAACTC
ATCACAGAACGAGAGAAAGACCCGCACAGGACATGGCAATCACGCACTGT
GGGTACATTTGTGAAGCAAGTGAGCAAAGTTCCAACTCCAGGAGATGCCC
TGAGGTCTCTCCTAGATATCATGCCTGGTTTTGATTTATAA

Coding sequence (CDS) from alignment at tig00000069_pilon:817972..819012+

>Ggra5228.t1 ID=Ggra5228.t1|Name=Ggra5228.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000069_pilon:817972..819012+ (Gracilaria gracilis GNS1m male)
TTGTCTGATCTCATTGCCTCGGATGAACAAGAAAAACAAAGAAGCAATTC
AAATGCCCACGATGGAGCTCGTGTTTTCTCGGGAAACGGCGAAGCTACGC
CTTTCCAGTCGGAGAAAGGTTATGAGTACAATGAAGCCATTGAAGAAGGT
AGAAAAGTGTTTGAGCCCTGGAGGAGAGCGATTTCTCCTAAAGTTGTGGG
CAAGGCCAACGTTGAGGATGCTCTGAGAATGTCACAGTGCAGTAGAGGGA
ACCGGCCAGTCCTCTTCGTGGGCAACCATGGCATGCTCGGTATTATGGAT
ACTTCACTTATTTACATGGAGATACATGACCTCCTTAACGGTGACAGACT
TCGACCGTTGGCCGATCGAATTCATTTTGGTCTCTACTCCAAGGTTTCAA
ACGGAAGGTGGGATAACTTTATAAAGACGCTCGGGGCCGTAAGGGCAAGC
CCTTTGAGTTTCTACCGTCTGCTGGCATCGGGTGATAGGATTTTGTTGTT
TCCTGGGGGGGCCAGAGAAGTTTGTCGTCGCCGAGGGGAGCGAAATCAGA
TCTTTTGGGACGACAAGCTGGACTTCTTACGGCCCGCTGCGAAGTTTAAC
GCACTCATAGTGCCCTTCAGTGCCGTTGGGGCTGACGATGCAGTGAATCT
CCTACTTGACGGGCAAGAGATGCAGAAACTTCCGGTACTCGGCCCGGCAA
TTCGTCGATTTCTGGAGGGCAATGATCTATCTGTGGCAAATGTTATGCCG
CTTACCACAACACCACCACGGCTCGACCGCTTTTACTTTAAATTCCATGA
AGCAATTGATACCGAAGATATAGACTCTTCGGATATTGATGCATGCGGAG
AAGTTTACAGAAGAGTTAAAGAGGTAGTCGAACATGGTATCAGCCAACTC
ATCACAGAACGAGAGAAAGACCCGCACAGGACATGGCAATCACGCACTGT
GGGTACATTTGTGAAGCAAGTGAGCAAAGTTCCAACTCCAGGAGATGCCC
TGAGGTCTCTCCTAGATATCATGCCTGGTTTTGATTTATAA