Ggra5227.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5227.t1
Unique NameGgra5227.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:815232..816380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog132113.XP_003484647.1
Preferred nameUBR7
PFAMszf-UBR
Max annot lvl33208|Metazoa
KEGG koko:K11979
Evalue1.06e-38
EggNOG OGsKOG2752@1|root,KOG2752@2759|Eukaryota,38GJS@33154|Opisthokonta,3BA1D@33208|Metazoa,3CXRE@33213|Bilateria,41W9W@6656|Arthropoda,3SIVY@50557|Insecta,46EAR@7399|Hymenoptera
EC2.3.2.27
DescriptionPutative zinc finger in N-recognin (UBR box)
COG categoryS
BRITEko00000,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5227Ggra5227Gracilaria gracilis GNS1m malegenetig00000069_pilon 815232..816380 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5227.t1.stop1Ggra5227.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 815232..815234 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5227.t1.CDS1Ggra5227.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 815232..816380 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5227.t1.exon1Ggra5227.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 815232..816380 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5227.t1.start1Ggra5227.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 816378..816380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5227.t1Ggra5227.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 815232..816380 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5227.t1 ID=Ggra5227.t1|Name=Ggra5227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MPRQRRRQSKKIEAKPCTYELGYVRQDLYACSHCTRKADGVLSAFCRSCR
EACHADHADEVFELYTKRNFRCDCGNMRAGNECFMYAEKDEFNVGNEPSY
SHNFLSRYCRCDEPYDIRLAMAQCAVCEDWFHEKCYKLDKGATADQPYDF
EYEFTCKQCVAKLPVLAEYYDFQSVWKTKPANVKPRSGTCIRPNQHRPVT
KAGSVDYMWHPGFRLTLCTCNRCMEIYERNKVLYIVDRNDLLASFKEPEE
TEFLGPSSPAQNVQLIEELLEESEESVQLKRKQSSGGKKDVRESTSSGRR
TPKNLGSAKKRRTDSPGFPKVQDVKSVRERVQCFLEEAIRTNGANMTRES
LLQYKKDIDTSTQMESNPGQWKESDMLRKIEF*
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spliced messenger RNA

>Ggra5227.t1 ID=Ggra5227.t1|Name=Ggra5227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000069_pilon:815232..816380- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCCAGAGGCGTCGACAATCCAAGAAGATAGAAGCAAAACCATG
TACATACGAACTTGGATATGTTCGCCAAGACTTATACGCGTGCTCCCACT
GCACGAGGAAAGCTGATGGCGTTCTTTCTGCTTTCTGTCGCAGCTGTCGA
GAAGCGTGCCATGCAGATCATGCAGATGAAGTGTTTGAGCTTTACACAAA
ACGAAACTTCCGCTGTGACTGTGGGAACATGCGAGCTGGAAATGAATGTT
TCATGTATGCCGAAAAAGATGAATTCAATGTGGGAAACGAACCCAGTTAC
TCCCATAACTTTCTCAGCCGCTACTGTCGATGTGACGAGCCGTATGATAT
TCGGCTTGCCATGGCGCAATGCGCTGTGTGTGAAGACTGGTTTCACGAGA
AATGCTATAAACTCGACAAAGGGGCCACAGCGGATCAACCGTACGATTTC
GAATACGAATTTACTTGCAAGCAGTGTGTGGCAAAGTTGCCTGTTCTGGC
GGAGTATTACGACTTTCAAAGTGTATGGAAGACCAAACCAGCAAATGTAA
AACCTCGTTCAGGTACATGTATTCGCCCGAACCAACATCGGCCGGTAACA
AAAGCTGGCTCTGTGGACTACATGTGGCATCCTGGCTTCCGTTTAACTCT
TTGTACATGTAATCGTTGTATGGAAATATATGAAAGAAACAAAGTGCTCT
ACATCGTTGACAGAAATGATCTGCTTGCTAGTTTCAAAGAACCAGAAGAA
ACTGAGTTTCTTGGGCCATCGTCTCCGGCTCAGAATGTACAACTTATTGA
AGAACTACTGGAAGAATCTGAGGAAAGTGTCCAACTCAAAAGGAAACAGA
GCAGCGGTGGAAAGAAGGACGTGCGAGAATCTACTAGTTCTGGAAGACGT
ACACCGAAGAATCTTGGTTCAGCGAAGAAACGACGGACAGACTCGCCTGG
CTTCCCCAAGGTCCAAGATGTCAAGTCCGTACGAGAAAGAGTTCAGTGCT
TTTTGGAAGAGGCCATTCGGACAAACGGGGCCAATATGACGCGAGAATCG
CTTTTGCAATACAAGAAAGATATCGATACTTCAACGCAAATGGAGTCAAA
CCCAGGCCAATGGAAAGAATCTGACATGCTGCGCAAGATTGAATTCTGA
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protein sequence of Ggra5227.t1

>Ggra5227.t1 ID=Ggra5227.t1|Name=Ggra5227.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MPRQRRRQSKKIEAKPCTYELGYVRQDLYACSHCTRKADGVLSAFCRSCR
EACHADHADEVFELYTKRNFRCDCGNMRAGNECFMYAEKDEFNVGNEPSY
SHNFLSRYCRCDEPYDIRLAMAQCAVCEDWFHEKCYKLDKGATADQPYDF
EYEFTCKQCVAKLPVLAEYYDFQSVWKTKPANVKPRSGTCIRPNQHRPVT
KAGSVDYMWHPGFRLTLCTCNRCMEIYERNKVLYIVDRNDLLASFKEPEE
TEFLGPSSPAQNVQLIEELLEESEESVQLKRKQSSGGKKDVRESTSSGRR
TPKNLGSAKKRRTDSPGFPKVQDVKSVRERVQCFLEEAIRTNGANMTRES
LLQYKKDIDTSTQMESNPGQWKESDMLRKIEF*
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mRNA from alignment at tig00000069_pilon:815232..816380-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5227.t1 ID=Ggra5227.t1|Name=Ggra5227.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000069_pilon:815232..816380- (Gracilaria gracilis GNS1m male)
ATGCCGCGCCAGAGGCGTCGACAATCCAAGAAGATAGAAGCAAAACCATG
TACATACGAACTTGGATATGTTCGCCAAGACTTATACGCGTGCTCCCACT
GCACGAGGAAAGCTGATGGCGTTCTTTCTGCTTTCTGTCGCAGCTGTCGA
GAAGCGTGCCATGCAGATCATGCAGATGAAGTGTTTGAGCTTTACACAAA
ACGAAACTTCCGCTGTGACTGTGGGAACATGCGAGCTGGAAATGAATGTT
TCATGTATGCCGAAAAAGATGAATTCAATGTGGGAAACGAACCCAGTTAC
TCCCATAACTTTCTCAGCCGCTACTGTCGATGTGACGAGCCGTATGATAT
TCGGCTTGCCATGGCGCAATGCGCTGTGTGTGAAGACTGGTTTCACGAGA
AATGCTATAAACTCGACAAAGGGGCCACAGCGGATCAACCGTACGATTTC
GAATACGAATTTACTTGCAAGCAGTGTGTGGCAAAGTTGCCTGTTCTGGC
GGAGTATTACGACTTTCAAAGTGTATGGAAGACCAAACCAGCAAATGTAA
AACCTCGTTCAGGTACATGTATTCGCCCGAACCAACATCGGCCGGTAACA
AAAGCTGGCTCTGTGGACTACATGTGGCATCCTGGCTTCCGTTTAACTCT
TTGTACATGTAATCGTTGTATGGAAATATATGAAAGAAACAAAGTGCTCT
ACATCGTTGACAGAAATGATCTGCTTGCTAGTTTCAAAGAACCAGAAGAA
ACTGAGTTTCTTGGGCCATCGTCTCCGGCTCAGAATGTACAACTTATTGA
AGAACTACTGGAAGAATCTGAGGAAAGTGTCCAACTCAAAAGGAAACAGA
GCAGCGGTGGAAAGAAGGACGTGCGAGAATCTACTAGTTCTGGAAGACGT
ACACCGAAGAATCTTGGTTCAGCGAAGAAACGACGGACAGACTCGCCTGG
CTTCCCCAAGGTCCAAGATGTCAAGTCCGTACGAGAAAGAGTTCAGTGCT
TTTTGGAAGAGGCCATTCGGACAAACGGGGCCAATATGACGCGAGAATCG
CTTTTGCAATACAAGAAAGATATCGATACTTCAACGCAAATGGAGTCAAA
CCCAGGCCAATGGAAAGAATCTGACATGCTGCGCAAGATTGAATTCTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:815232..816380-

>Ggra5227.t1 ID=Ggra5227.t1|Name=Ggra5227.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000069_pilon:815232..816380- (Gracilaria gracilis GNS1m male)
ATGCCGCGCCAGAGGCGTCGACAATCCAAGAAGATAGAAGCAAAACCATG
TACATACGAACTTGGATATGTTCGCCAAGACTTATACGCGTGCTCCCACT
GCACGAGGAAAGCTGATGGCGTTCTTTCTGCTTTCTGTCGCAGCTGTCGA
GAAGCGTGCCATGCAGATCATGCAGATGAAGTGTTTGAGCTTTACACAAA
ACGAAACTTCCGCTGTGACTGTGGGAACATGCGAGCTGGAAATGAATGTT
TCATGTATGCCGAAAAAGATGAATTCAATGTGGGAAACGAACCCAGTTAC
TCCCATAACTTTCTCAGCCGCTACTGTCGATGTGACGAGCCGTATGATAT
TCGGCTTGCCATGGCGCAATGCGCTGTGTGTGAAGACTGGTTTCACGAGA
AATGCTATAAACTCGACAAAGGGGCCACAGCGGATCAACCGTACGATTTC
GAATACGAATTTACTTGCAAGCAGTGTGTGGCAAAGTTGCCTGTTCTGGC
GGAGTATTACGACTTTCAAAGTGTATGGAAGACCAAACCAGCAAATGTAA
AACCTCGTTCAGGTACATGTATTCGCCCGAACCAACATCGGCCGGTAACA
AAAGCTGGCTCTGTGGACTACATGTGGCATCCTGGCTTCCGTTTAACTCT
TTGTACATGTAATCGTTGTATGGAAATATATGAAAGAAACAAAGTGCTCT
ACATCGTTGACAGAAATGATCTGCTTGCTAGTTTCAAAGAACCAGAAGAA
ACTGAGTTTCTTGGGCCATCGTCTCCGGCTCAGAATGTACAACTTATTGA
AGAACTACTGGAAGAATCTGAGGAAAGTGTCCAACTCAAAAGGAAACAGA
GCAGCGGTGGAAAGAAGGACGTGCGAGAATCTACTAGTTCTGGAAGACGT
ACACCGAAGAATCTTGGTTCAGCGAAGAAACGACGGACAGACTCGCCTGG
CTTCCCCAAGGTCCAAGATGTCAAGTCCGTACGAGAAAGAGTTCAGTGCT
TTTTGGAAGAGGCCATTCGGACAAACGGGGCCAATATGACGCGAGAATCG
CTTTTGCAATACAAGAAAGATATCGATACTTCAACGCAAATGGAGTCAAA
CCCAGGCCAATGGAAAGAATCTGACATGCTGCGCAAGATTGAATTCTGA
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