Ggra5222.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5222.t1
Unique NameGgra5222.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:801520..802153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog766499.C357_02144
Preferred nameruvX
PFAMsRuvX
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07447
GOsGO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue1.07e-15
EggNOG OGsCOG0816@1|root,COG0816@2|Bacteria,1RDHZ@1224|Proteobacteria,2U98Y@28211|Alphaproteobacteria
DescriptionCould be a nuclease involved in processing of the 5'-end of pre-16S rRNA
COG categoryL
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5222Ggra5222Gracilaria gracilis GNS1m malegenetig00000069_pilon 801520..802153 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1Ggra5222.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 801520..802153 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1.stop1Ggra5222.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 801520..801522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1.CDS1Ggra5222.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 801520..801588 -
Ggra5222.t1.CDS2Ggra5222.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 801683..802153 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1.exon1Ggra5222.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 801520..801588 -
Ggra5222.t1.exon2Ggra5222.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 801683..802153 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1.intron1Ggra5222.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 801589..801682 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5222.t1.start1Ggra5222.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 802151..802153 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5222.t1 ID=Ggra5222.t1|Name=Ggra5222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MKVFNLIGEAHGMIRSELQSFCALVKQSSGPLLGMDVGTRHIGVALSDNA
RLISFPHSAFRRRSVLSDVNRLRYLANESQLSCAVVGMPRAPHGAECRAL
QQFVRLYSSRVLAESGFRAVAYWDESFTTVLAKDVFMTSAKKSERNNVTL
RKRRVDAGAAAMILQDVLDAMKQLPDGEG*
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spliced messenger RNA

>Ggra5222.t1 ID=Ggra5222.t1|Name=Ggra5222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000069_pilon:801520..802153- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGTGTTCAACTTGATCGGAGAGGCGCATGGTATGATAAGATCTGA
ATTGCAGAGCTTTTGCGCTCTGGTGAAGCAAAGCAGCGGCCCACTGCTTG
GAATGGATGTCGGCACTCGCCATATCGGGGTGGCCTTGTCCGATAATGCG
CGTTTAATCTCATTTCCACACAGCGCCTTTCGCCGGCGAAGCGTTTTGTC
TGACGTCAACCGGCTGCGGTATCTGGCCAATGAATCTCAGCTGAGTTGTG
CTGTGGTTGGCATGCCGCGCGCTCCGCATGGCGCTGAATGCCGAGCGTTG
CAGCAATTTGTACGTTTGTATTCTAGTCGTGTGCTGGCTGAAAGTGGGTT
TCGCGCTGTTGCGTACTGGGACGAGAGTTTCACAACGGTGTTGGCCAAAG
ATGTCTTCATGACAAGTGCAAAAAAAAGTGAACGTAACAACGTTACGTTG
AGGAAACGAAGAGTTGATGCGGGTGCCGCCGCGATGATTCTGCAAGACGT
TTTGGACGCCATGAAGCAACTTCCGGACGGCGAGGGATGA
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protein sequence of Ggra5222.t1

>Ggra5222.t1 ID=Ggra5222.t1|Name=Ggra5222.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MKVFNLIGEAHGMIRSELQSFCALVKQSSGPLLGMDVGTRHIGVALSDNA
RLISFPHSAFRRRSVLSDVNRLRYLANESQLSCAVVGMPRAPHGAECRAL
QQFVRLYSSRVLAESGFRAVAYWDESFTTVLAKDVFMTSAKKSERNNVTL
RKRRVDAGAAAMILQDVLDAMKQLPDGEG*
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mRNA from alignment at tig00000069_pilon:801520..802153-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5222.t1 ID=Ggra5222.t1|Name=Ggra5222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=634bp|location=Sequence derived from alignment at tig00000069_pilon:801520..802153- (Gracilaria gracilis GNS1m male)
ATGAAAGTGTTCAACTTGATCGGAGAGGCGCATGGTATGATAAGATCTGA
ATTGCAGAGCTTTTGCGCTCTGGTGAAGCAAAGCAGCGGCCCACTGCTTG
GAATGGATGTCGGCACTCGCCATATCGGGGTGGCCTTGTCCGATAATGCG
CGTTTAATCTCATTTCCACACAGCGCCTTTCGCCGGCGAAGCGTTTTGTC
TGACGTCAACCGGCTGCGGTATCTGGCCAATGAATCTCAGCTGAGTTGTG
CTGTGGTTGGCATGCCGCGCGCTCCGCATGGCGCTGAATGCCGAGCGTTG
CAGCAATTTGTACGTTTGTATTCTAGTCGTGTGCTGGCTGAAAGTGGGTT
TCGCGCTGTTGCGTACTGGGACGAGAGTTTCACAACGGTGTTGGCCAAAG
ATGTCTTCATGACAAGTGCAAAAAAAAGTGAACGTAACAACGTTACGTTG
AGGAAACGAAGAGTTGATGCGGTAAGTGTTCGATGTGCTGATCGACAACA
CCCACTTTCTCACGTGTCTACTTGAAGAACTTGCAGCTGACTGAACATGA
TATGTCATTTTGTAGGGTGCCGCCGCGATGATTCTGCAAGACGTTTTGGA
CGCCATGAAGCAACTTCCGGACGGCGAGGGATGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:801520..802153-

>Ggra5222.t1 ID=Ggra5222.t1|Name=Ggra5222.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000069_pilon:801520..802153- (Gracilaria gracilis GNS1m male)
ATGAAAGTGTTCAACTTGATCGGAGAGGCGCATGGTATGATAAGATCTGA
ATTGCAGAGCTTTTGCGCTCTGGTGAAGCAAAGCAGCGGCCCACTGCTTG
GAATGGATGTCGGCACTCGCCATATCGGGGTGGCCTTGTCCGATAATGCG
CGTTTAATCTCATTTCCACACAGCGCCTTTCGCCGGCGAAGCGTTTTGTC
TGACGTCAACCGGCTGCGGTATCTGGCCAATGAATCTCAGCTGAGTTGTG
CTGTGGTTGGCATGCCGCGCGCTCCGCATGGCGCTGAATGCCGAGCGTTG
CAGCAATTTGTACGTTTGTATTCTAGTCGTGTGCTGGCTGAAAGTGGGTT
TCGCGCTGTTGCGTACTGGGACGAGAGTTTCACAACGGTGTTGGCCAAAG
ATGTCTTCATGACAAGTGCAAAAAAAAGTGAACGTAACAACGTTACGTTG
AGGAAACGAAGAGTTGATGCGGGTGCCGCCGCGATGATTCTGCAAGACGT
TTTGGACGCCATGAAGCAACTTCCGGACGGCGAGGGATGA
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