Ggra5218.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5218.t1
Unique NameGgra5218.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:793602..795221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002508526.1
PFAMsG_glu_transpept
Max annot lvl33090|Viridiplantae
KEGG rclassRC00064,RC00090,RC00096
KEGG koko:K00681
KEGG ReactionR00494,R01262,R01687,R03867,R03916,R03970,R03971,R04935
KEGG Pathwayko00430,ko00460,ko00480,ko01100,map00430,map00460,map00480,map01100
Evalue2.89e-121
EggNOG OGsCOG0405@1|root,KOG2410@2759|Eukaryota,37HV8@33090|Viridiplantae
EC2.3.2.2,3.4.19.13
DescriptionGamma-glutamyltranspeptidase
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5218Ggra5218Gracilaria gracilis GNS1m malegenetig00000069_pilon 793602..795221 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5218.t1.start1Ggra5218.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 793602..793604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5218.t1.CDS1Ggra5218.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 793602..795221 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5218.t1.exon1Ggra5218.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 793602..795221 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5218.t1.stop1Ggra5218.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 795219..795221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5218.t1Ggra5218.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 793602..795221 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5218.t1 ID=Ggra5218.t1|Name=Ggra5218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp
MAPATPAVTRKAVYGRAAVASSQPLATSAGLQILHNGGNAFDAAIAVGAT
LAVTEPCSNGIGGDFIALCDDNVSVTAVLGIGAAPAAISPSLFPPQPVPL
DCVHTITVPGTIAAWVDVKERFGSTKLSLSDCLQPAIRAARDGFPLGETT
AYYWKRNEDILRETMNGTDMLINDKAIGYHRAPKAGEVFVNSALARVLEE
VAENGRDAFYGGRVADAIVNTISELGGVMTKQDLGQHKTLFTKPISTTYR
GRTVYEPPPPTHGVVALMCLNILDKYNMSEMDEADAWHVMIEAVRLSFAH
ASKRIADPEYARDCSAELIDASFCEQLRQRIDMSRRCDVKQGAQMQKGGT
VQFSVIDREGNTVSAVQSNYCNFGTGHVPERCGFTLQNRGLNFSLNAQDA
NCIGGGKRSYHTIIPAIAKRGEWKAAIGVMGSFMQPQAHVQVLHSLLDKG
MDAQQALDRSRFRVTGAFSGVEKGMCDDAVLVEEGFCEKARRELERRGHD
LRVGELADFGKGHVCVRDEGGVAMGGADNRADGVAMATQ*
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spliced messenger RNA

>Ggra5218.t1 ID=Ggra5218.t1|Name=Ggra5218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000069_pilon:793602..795221+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGCCACTCCGGCCGTCACGAGGAAGGCCGTGTACGGCCGCGC
GGCCGTGGCAAGCTCGCAGCCGTTGGCGACGTCGGCCGGGCTGCAAATCT
TGCATAACGGCGGCAATGCTTTCGACGCCGCCATCGCAGTGGGCGCCACG
CTGGCCGTCACCGAGCCGTGTTCGAATGGAATCGGCGGCGATTTCATTGC
CTTGTGCGATGACAACGTCAGCGTCACAGCCGTGCTCGGTATAGGAGCCG
CGCCGGCGGCTATCAGTCCGTCGTTGTTCCCGCCGCAGCCGGTACCGCTC
GACTGCGTGCATACCATCACTGTGCCCGGCACGATTGCCGCCTGGGTTGA
TGTCAAGGAGCGTTTCGGATCTACCAAACTTTCGCTGTCAGACTGCTTGC
AGCCGGCTATTCGGGCCGCCAGGGACGGCTTTCCGCTCGGAGAGACTACG
GCGTACTACTGGAAGCGTAACGAAGACATTCTGAGGGAAACCATGAACGG
CACCGACATGCTGATCAACGACAAGGCCATTGGTTACCATCGCGCGCCGA
AGGCCGGTGAGGTGTTTGTCAATAGTGCGCTGGCACGCGTGTTGGAGGAA
GTGGCCGAGAACGGACGCGATGCATTCTACGGCGGTCGTGTGGCAGACGC
CATCGTCAACACCATAAGTGAGCTCGGCGGAGTTATGACCAAACAGGATC
TGGGGCAGCATAAGACTCTGTTCACGAAGCCCATCTCCACTACGTATCGC
GGGCGAACGGTGTATGAACCGCCGCCACCGACGCACGGAGTTGTGGCACT
CATGTGTCTCAACATTCTGGACAAGTACAACATGAGCGAAATGGACGAAG
CTGATGCATGGCATGTTATGATTGAGGCGGTTCGTCTGAGCTTCGCGCAC
GCCTCGAAACGCATCGCAGACCCTGAATATGCACGCGACTGCTCAGCAGA
ACTGATTGACGCATCGTTCTGTGAGCAGCTGCGGCAGCGAATCGACATGT
CACGCCGATGCGATGTTAAGCAGGGCGCGCAAATGCAAAAAGGCGGCACG
GTTCAATTCTCCGTGATCGACAGAGAGGGAAATACGGTAAGCGCGGTGCA
GTCCAACTACTGCAACTTCGGCACTGGGCACGTTCCAGAACGGTGCGGGT
TCACGCTGCAGAACCGAGGGCTCAACTTCTCGCTGAACGCCCAGGATGCT
AATTGCATTGGCGGAGGGAAGAGATCTTACCATACGATCATCCCGGCCAT
AGCCAAGCGCGGGGAGTGGAAGGCGGCGATCGGGGTGATGGGGTCGTTCA
TGCAACCGCAGGCTCACGTGCAGGTGCTACACAGCCTGCTGGACAAGGGG
ATGGACGCGCAGCAGGCGCTGGACAGAAGCCGCTTCCGAGTGACGGGCGC
GTTCTCGGGCGTGGAGAAGGGCATGTGCGACGACGCTGTGCTGGTGGAGG
AGGGCTTCTGCGAGAAGGCGAGGCGGGAGCTGGAGCGGAGGGGGCACGAC
TTGCGCGTGGGCGAGCTGGCGGACTTCGGCAAGGGCCATGTGTGCGTGCG
GGACGAGGGCGGGGTGGCGATGGGTGGCGCCGACAACCGCGCGGACGGCG
TGGCGATGGCGACTCAGTAA
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protein sequence of Ggra5218.t1

>Ggra5218.t1 ID=Ggra5218.t1|Name=Ggra5218.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=540bp
MAPATPAVTRKAVYGRAAVASSQPLATSAGLQILHNGGNAFDAAIAVGAT
LAVTEPCSNGIGGDFIALCDDNVSVTAVLGIGAAPAAISPSLFPPQPVPL
DCVHTITVPGTIAAWVDVKERFGSTKLSLSDCLQPAIRAARDGFPLGETT
AYYWKRNEDILRETMNGTDMLINDKAIGYHRAPKAGEVFVNSALARVLEE
VAENGRDAFYGGRVADAIVNTISELGGVMTKQDLGQHKTLFTKPISTTYR
GRTVYEPPPPTHGVVALMCLNILDKYNMSEMDEADAWHVMIEAVRLSFAH
ASKRIADPEYARDCSAELIDASFCEQLRQRIDMSRRCDVKQGAQMQKGGT
VQFSVIDREGNTVSAVQSNYCNFGTGHVPERCGFTLQNRGLNFSLNAQDA
NCIGGGKRSYHTIIPAIAKRGEWKAAIGVMGSFMQPQAHVQVLHSLLDKG
MDAQQALDRSRFRVTGAFSGVEKGMCDDAVLVEEGFCEKARRELERRGHD
LRVGELADFGKGHVCVRDEGGVAMGGADNRADGVAMATQ*
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mRNA from alignment at tig00000069_pilon:793602..795221+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5218.t1 ID=Ggra5218.t1|Name=Ggra5218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1620bp|location=Sequence derived from alignment at tig00000069_pilon:793602..795221+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCGCCACTCCGGCCGTCACGAGGAAGGCCGTGTACGGCCGCGC
GGCCGTGGCAAGCTCGCAGCCGTTGGCGACGTCGGCCGGGCTGCAAATCT
TGCATAACGGCGGCAATGCTTTCGACGCCGCCATCGCAGTGGGCGCCACG
CTGGCCGTCACCGAGCCGTGTTCGAATGGAATCGGCGGCGATTTCATTGC
CTTGTGCGATGACAACGTCAGCGTCACAGCCGTGCTCGGTATAGGAGCCG
CGCCGGCGGCTATCAGTCCGTCGTTGTTCCCGCCGCAGCCGGTACCGCTC
GACTGCGTGCATACCATCACTGTGCCCGGCACGATTGCCGCCTGGGTTGA
TGTCAAGGAGCGTTTCGGATCTACCAAACTTTCGCTGTCAGACTGCTTGC
AGCCGGCTATTCGGGCCGCCAGGGACGGCTTTCCGCTCGGAGAGACTACG
GCGTACTACTGGAAGCGTAACGAAGACATTCTGAGGGAAACCATGAACGG
CACCGACATGCTGATCAACGACAAGGCCATTGGTTACCATCGCGCGCCGA
AGGCCGGTGAGGTGTTTGTCAATAGTGCGCTGGCACGCGTGTTGGAGGAA
GTGGCCGAGAACGGACGCGATGCATTCTACGGCGGTCGTGTGGCAGACGC
CATCGTCAACACCATAAGTGAGCTCGGCGGAGTTATGACCAAACAGGATC
TGGGGCAGCATAAGACTCTGTTCACGAAGCCCATCTCCACTACGTATCGC
GGGCGAACGGTGTATGAACCGCCGCCACCGACGCACGGAGTTGTGGCACT
CATGTGTCTCAACATTCTGGACAAGTACAACATGAGCGAAATGGACGAAG
CTGATGCATGGCATGTTATGATTGAGGCGGTTCGTCTGAGCTTCGCGCAC
GCCTCGAAACGCATCGCAGACCCTGAATATGCACGCGACTGCTCAGCAGA
ACTGATTGACGCATCGTTCTGTGAGCAGCTGCGGCAGCGAATCGACATGT
CACGCCGATGCGATGTTAAGCAGGGCGCGCAAATGCAAAAAGGCGGCACG
GTTCAATTCTCCGTGATCGACAGAGAGGGAAATACGGTAAGCGCGGTGCA
GTCCAACTACTGCAACTTCGGCACTGGGCACGTTCCAGAACGGTGCGGGT
TCACGCTGCAGAACCGAGGGCTCAACTTCTCGCTGAACGCCCAGGATGCT
AATTGCATTGGCGGAGGGAAGAGATCTTACCATACGATCATCCCGGCCAT
AGCCAAGCGCGGGGAGTGGAAGGCGGCGATCGGGGTGATGGGGTCGTTCA
TGCAACCGCAGGCTCACGTGCAGGTGCTACACAGCCTGCTGGACAAGGGG
ATGGACGCGCAGCAGGCGCTGGACAGAAGCCGCTTCCGAGTGACGGGCGC
GTTCTCGGGCGTGGAGAAGGGCATGTGCGACGACGCTGTGCTGGTGGAGG
AGGGCTTCTGCGAGAAGGCGAGGCGGGAGCTGGAGCGGAGGGGGCACGAC
TTGCGCGTGGGCGAGCTGGCGGACTTCGGCAAGGGCCATGTGTGCGTGCG
GGACGAGGGCGGGGTGGCGATGGGTGGCGCCGACAACCGCGCGGACGGCG
TGGCGATGGCGACTCAGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:793602..795221+

>Ggra5218.t1 ID=Ggra5218.t1|Name=Ggra5218.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1620bp|location=Sequence derived from alignment at tig00000069_pilon:793602..795221+ (Gracilaria gracilis GNS1m male)
ATGGCGCCCGCCACTCCGGCCGTCACGAGGAAGGCCGTGTACGGCCGCGC
GGCCGTGGCAAGCTCGCAGCCGTTGGCGACGTCGGCCGGGCTGCAAATCT
TGCATAACGGCGGCAATGCTTTCGACGCCGCCATCGCAGTGGGCGCCACG
CTGGCCGTCACCGAGCCGTGTTCGAATGGAATCGGCGGCGATTTCATTGC
CTTGTGCGATGACAACGTCAGCGTCACAGCCGTGCTCGGTATAGGAGCCG
CGCCGGCGGCTATCAGTCCGTCGTTGTTCCCGCCGCAGCCGGTACCGCTC
GACTGCGTGCATACCATCACTGTGCCCGGCACGATTGCCGCCTGGGTTGA
TGTCAAGGAGCGTTTCGGATCTACCAAACTTTCGCTGTCAGACTGCTTGC
AGCCGGCTATTCGGGCCGCCAGGGACGGCTTTCCGCTCGGAGAGACTACG
GCGTACTACTGGAAGCGTAACGAAGACATTCTGAGGGAAACCATGAACGG
CACCGACATGCTGATCAACGACAAGGCCATTGGTTACCATCGCGCGCCGA
AGGCCGGTGAGGTGTTTGTCAATAGTGCGCTGGCACGCGTGTTGGAGGAA
GTGGCCGAGAACGGACGCGATGCATTCTACGGCGGTCGTGTGGCAGACGC
CATCGTCAACACCATAAGTGAGCTCGGCGGAGTTATGACCAAACAGGATC
TGGGGCAGCATAAGACTCTGTTCACGAAGCCCATCTCCACTACGTATCGC
GGGCGAACGGTGTATGAACCGCCGCCACCGACGCACGGAGTTGTGGCACT
CATGTGTCTCAACATTCTGGACAAGTACAACATGAGCGAAATGGACGAAG
CTGATGCATGGCATGTTATGATTGAGGCGGTTCGTCTGAGCTTCGCGCAC
GCCTCGAAACGCATCGCAGACCCTGAATATGCACGCGACTGCTCAGCAGA
ACTGATTGACGCATCGTTCTGTGAGCAGCTGCGGCAGCGAATCGACATGT
CACGCCGATGCGATGTTAAGCAGGGCGCGCAAATGCAAAAAGGCGGCACG
GTTCAATTCTCCGTGATCGACAGAGAGGGAAATACGGTAAGCGCGGTGCA
GTCCAACTACTGCAACTTCGGCACTGGGCACGTTCCAGAACGGTGCGGGT
TCACGCTGCAGAACCGAGGGCTCAACTTCTCGCTGAACGCCCAGGATGCT
AATTGCATTGGCGGAGGGAAGAGATCTTACCATACGATCATCCCGGCCAT
AGCCAAGCGCGGGGAGTGGAAGGCGGCGATCGGGGTGATGGGGTCGTTCA
TGCAACCGCAGGCTCACGTGCAGGTGCTACACAGCCTGCTGGACAAGGGG
ATGGACGCGCAGCAGGCGCTGGACAGAAGCCGCTTCCGAGTGACGGGCGC
GTTCTCGGGCGTGGAGAAGGGCATGTGCGACGACGCTGTGCTGGTGGAGG
AGGGCTTCTGCGAGAAGGCGAGGCGGGAGCTGGAGCGGAGGGGGCACGAC
TTGCGCGTGGGCGAGCTGGCGGACTTCGGCAAGGGCCATGTGTGCGTGCG
GGACGAGGGCGGGGTGGCGATGGGTGGCGCCGACAACCGCGCGGACGGCG
TGGCGATGGCGACTCAGTAA
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