Ggra5216.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5216.t1
Unique NameGgra5216.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length663
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:790014..792576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog112098.XP_008610734.1
Preferred nameOPB
PFAMsIon_trans,Peptidase_S9,Peptidase_S9_N,cNMP_binding
Max annot lvl2759|Eukaryota
KEGG koko:K01354
KEGG Pathwayko05142,ko05143,map05142,map05143
Evalue3.94e-25
EggNOG OGsCOG1505@1|root,KOG0498@1|root,KOG0498@2759|Eukaryota,KOG2237@2759|Eukaryota
EC3.4.21.83
Descriptionserine-type exopeptidase activity
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5216Ggra5216Gracilaria gracilis GNS1m malegenetig00000069_pilon 790014..792576 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1.start1Ggra5216.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 790014..790016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1.CDS1Ggra5216.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 790014..790065 +
Ggra5216.t1.CDS2Ggra5216.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 790304..790400 +
Ggra5216.t1.CDS3Ggra5216.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 790483..790514 +
Ggra5216.t1.CDS4Ggra5216.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000069_pilon 790595..791567 +
Ggra5216.t1.CDS5Ggra5216.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000069_pilon 791665..791688 +
Ggra5216.t1.CDS6Ggra5216.t1.CDS6Gracilaria gracilis GNS1m maleCDStig00000069_pilon 791766..792576 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1.exon1Ggra5216.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 790014..790065 +
Ggra5216.t1.exon2Ggra5216.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 790304..790400 +
Ggra5216.t1.exon3Ggra5216.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 790483..790514 +
Ggra5216.t1.exon4Ggra5216.t1.exon4Gracilaria gracilis GNS1m maleexontig00000069_pilon 790595..791567 +
Ggra5216.t1.exon5Ggra5216.t1.exon5Gracilaria gracilis GNS1m maleexontig00000069_pilon 791665..791688 +
Ggra5216.t1.exon6Ggra5216.t1.exon6Gracilaria gracilis GNS1m maleexontig00000069_pilon 791766..792576 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1.intron1Ggra5216.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 790066..790303 +
Ggra5216.t1.intron2Ggra5216.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 790401..790482 +
Ggra5216.t1.intron3Ggra5216.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000069_pilon 790515..790594 +
Ggra5216.t1.intron4Ggra5216.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000069_pilon 791568..791664 +
Ggra5216.t1.intron5Ggra5216.t1.intron5Gracilaria gracilis GNS1m maleintrontig00000069_pilon 791689..791765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1.stop1Ggra5216.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 792574..792576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5216.t1Ggra5216.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 790014..792576 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5216.t1 ID=Ggra5216.t1|Name=Ggra5216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=663bp
MADAKRVQQLPFAPRPALQLLSSAIFPYLSVHPLVHSRPSIYTPYLARFS
ASSWPRLPRRLDGTLRTTDSSASDYNDLPRRTSDSEPPKRHSVSPPANTD
DVQMRNRVNVLLNEQALEHHAHSSDYSLRNKLVHHRPHSSHGFLTFRPAW
DMFMLALLVYVATVSVFVYSFLGVLGVASVWFWIERLLDVSFIADVILSF
FFPPYDKNGHLLYDTQPSDARNRYLKTWFVPDVVSAFPWDIVVLAVVGTQ
SDQHLLQLPRFLRIVRLFKLVRLFRFLRLSAVFRFFEVKFRLKYGHVRLV
SLYVTVILIAHWFACAFFYFGSLGLDNPWTAEDYVPADLFGKYMTALYFS
VYTVTTIGYGDVTPENTVERTYTTIIMFLGAACFAQGTFHRILMTRGHRM
QVLKHIYSTRLTNSKLFERIPPAALDNVYDKVREKFFLSGQCLYKHGESP
KSFFILVDGKVRIEEQGEQPVTITTPGKMFGDSDLLFYQKRQGKAVCSDF
TTVICVPREAVMEVLQDHEMELKRLRDREALKLWERATKNVKQQIQYVRF
ARTLRCSAEEYMRNKGKDIKMCNPDTSTQAILSGLRNGDEALHVKAGETG
TAQRKEQSGTGGAAGQGKEYASITELKAELERKVKHIHQLEKKLESVQRH
LAEVAKVVKLEH*
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spliced messenger RNA

>Ggra5216.t1 ID=Ggra5216.t1|Name=Ggra5216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00000069_pilon:790014..792576+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATGCCAAGCGTGTGCAACAGCTGCCGTTCGCGCCGCGTCCCGC
TCTTCAGTTGCTGTCGTCCGCAATCTTTCCGTATCTCTCCGTTCATCCGC
TCGTGCACAGCCGCCCCTCTATATACACACCTTACTTGGCTCGTTTTAGT
GCGTCCTCATGGCCCCGACTTCCCCGCCGCCTCGATGGTACCTTGCGCAC
CACCGACTCCTCCGCCTCGGATTACAATGACCTCCCTCGTCGCACCTCTG
ACTCCGAGCCGCCGAAGCGTCATTCCGTCTCCCCTCCTGCAAACACCGAC
GATGTGCAGATGCGCAATCGCGTCAACGTTCTTCTCAACGAGCAGGCCTT
AGAGCATCACGCCCACAGCTCCGATTATTCTCTTCGAAACAAACTTGTTC
ATCATCGCCCACATTCATCGCATGGCTTTCTCACCTTCCGCCCAGCCTGG
GACATGTTCATGCTCGCCTTGTTGGTTTACGTTGCCACCGTTTCCGTCTT
TGTTTATTCCTTTCTTGGTGTCTTAGGTGTAGCTAGTGTTTGGTTCTGGA
TTGAACGTTTGCTTGATGTTTCCTTCATCGCCGATGTCATTCTTTCATTC
TTCTTCCCTCCTTATGACAAGAACGGCCACTTATTATACGATACTCAACC
TTCAGACGCTCGCAACCGATACCTCAAGACCTGGTTCGTCCCGGACGTCG
TCTCAGCTTTTCCGTGGGACATTGTAGTCCTGGCCGTTGTAGGCACTCAG
AGCGACCAACACTTGCTTCAGTTACCTCGTTTTCTTCGCATTGTGCGTCT
CTTCAAGCTTGTGCGCCTCTTCCGCTTTCTCCGTCTGTCCGCCGTCTTCA
GGTTCTTCGAGGTCAAGTTCAGGCTCAAGTACGGTCATGTGCGCCTCGTG
TCCTTGTACGTCACCGTCATTCTCATTGCGCATTGGTTTGCGTGCGCCTT
CTTCTATTTTGGCTCCCTTGGTCTGGACAATCCATGGACAGCTGAAGATT
ATGTGCCGGCAGATTTGTTTGGCAAGTACATGACCGCTCTGTACTTTTCG
GTGTACACCGTCACCACCATTGGGTATGGCGATGTCACGCCGGAGAACAC
AGTTGAACGAACGTACACCACCATCATCATGTTTTTGGGAGCGGCCTGCT
TTGCTCAAGGGACCTTCCACAGGATCTTAATGACCAGAGGCCATCGAATG
CAAGTTTTGAAACATATCTATAGCACACGTCTTACCAACTCCAAGCTGTT
CGAAAGAATCCCGCCTGCCGCCCTCGATAACGTTTACGACAAGGTTCGAG
AGAAGTTTTTCTTGAGCGGGCAGTGTCTTTACAAGCATGGCGAAAGTCCA
AAGAGCTTCTTCATTTTGGTAGATGGCAAGGTTAGAATTGAGGAGCAAGG
CGAACAGCCAGTTACGATAACCACCCCTGGTAAGATGTTTGGGGATAGTG
ACCTCCTGTTTTACCAAAAACGGCAAGGGAAGGCAGTATGTTCCGATTTC
ACAACCGTGATATGCGTTCCGCGTGAAGCCGTGATGGAGGTATTACAGGA
TCACGAAATGGAACTAAAGAGGCTAAGGGACCGAGAGGCTCTTAAACTGT
GGGAGAGGGCAACCAAAAACGTGAAACAACAAATTCAATACGTGAGGTTT
GCAAGGACGTTGCGCTGCAGTGCTGAAGAGTACATGCGCAATAAAGGAAA
GGATATCAAGATGTGCAACCCGGATACGTCGACCCAGGCGATTTTGTCAG
GTTTGAGAAACGGGGACGAGGCTCTGCATGTCAAAGCGGGGGAAACCGGT
ACGGCTCAAAGAAAGGAACAGAGTGGCACTGGTGGAGCTGCGGGACAAGG
CAAGGAATATGCCAGTATTACAGAACTGAAGGCTGAGCTGGAACGCAAGG
TGAAGCACATCCACCAGCTGGAGAAGAAGCTGGAGTCGGTACAGCGTCAC
CTTGCTGAGGTGGCGAAAGTAGTAAAGCTAGAGCATTGA
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protein sequence of Ggra5216.t1

>Ggra5216.t1 ID=Ggra5216.t1|Name=Ggra5216.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=663bp
MADAKRVQQLPFAPRPALQLLSSAIFPYLSVHPLVHSRPSIYTPYLARFS
ASSWPRLPRRLDGTLRTTDSSASDYNDLPRRTSDSEPPKRHSVSPPANTD
DVQMRNRVNVLLNEQALEHHAHSSDYSLRNKLVHHRPHSSHGFLTFRPAW
DMFMLALLVYVATVSVFVYSFLGVLGVASVWFWIERLLDVSFIADVILSF
FFPPYDKNGHLLYDTQPSDARNRYLKTWFVPDVVSAFPWDIVVLAVVGTQ
SDQHLLQLPRFLRIVRLFKLVRLFRFLRLSAVFRFFEVKFRLKYGHVRLV
SLYVTVILIAHWFACAFFYFGSLGLDNPWTAEDYVPADLFGKYMTALYFS
VYTVTTIGYGDVTPENTVERTYTTIIMFLGAACFAQGTFHRILMTRGHRM
QVLKHIYSTRLTNSKLFERIPPAALDNVYDKVREKFFLSGQCLYKHGESP
KSFFILVDGKVRIEEQGEQPVTITTPGKMFGDSDLLFYQKRQGKAVCSDF
TTVICVPREAVMEVLQDHEMELKRLRDREALKLWERATKNVKQQIQYVRF
ARTLRCSAEEYMRNKGKDIKMCNPDTSTQAILSGLRNGDEALHVKAGETG
TAQRKEQSGTGGAAGQGKEYASITELKAELERKVKHIHQLEKKLESVQRH
LAEVAKVVKLEH*
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mRNA from alignment at tig00000069_pilon:790014..792576+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5216.t1 ID=Ggra5216.t1|Name=Ggra5216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2563bp|location=Sequence derived from alignment at tig00000069_pilon:790014..792576+ (Gracilaria gracilis GNS1m male)
ATGGCCGATGCCAAGCGTGTGCAACAGCTGCCGTTCGCGCCGCGTCCCGC
TCGTGGGCGGCGCAAGCGCGCCGCCGCGACTGGTGCTTGTTGTTGTTGGG
CGCGCTCCACATCATGAGCCGTGACATGTGcgctgccgctgcccgcccgc
cgcctccgccgccgctgaccgcccgctgccgctgaccgcccgctgctgcT
GACCGccccctttcccccttcccccttcccccttcccccttccccctCCG
CGGTGCGCCGCGCGCCTTCATCTCCCACTGCACGCTGCAGTTCAGTTGCT
GTCGTCCGCAATCTTTCCGTATCTCTCCGTTCATCCGCTCGTGCACAGCC
GCCCCTCTATATACACACCTTACTTGGCTCGTTTTAGGTATGTTCCTCTT
CCTTCCGTACGTGCGCGTATCCCTGTCATCAACTCTCACACCGCCCTCTC
GCCGTACCTCCCTTTGCAGTGCGTCCTCATGGCCCCGACTTCCCCGCCGC
CGTCCGACTCCTCTAACAGGCACCGTCGCTTCGGCTCCGGCTTTGCCAAT
CTCATCTCCAGAACTACATATTCCAATTCAGTCGATGGTACCTTGCGCAC
CACCGACTCCTCCGCCTCGGATTACAATGACCTCCCTCGTCGCACCTCTG
ACTCCGAGCCGCCGAAGCGTCATTCCGTCTCCCCTCCTGCAAACACCGAC
GATGTGCAGATGCGCAATCGCGTCAACGTTCTTCTCAACGAGCAGGCCTT
AGAGCATCACGCCCACAGCTCCGATTATTCTCTTCGAAACAAACTTGTTC
ATCATCGCCCACATTCATCGCATGGCTTTCTCACCTTCCGCCCAGCCTGG
GACATGTTCATGCTCGCCTTGTTGGTTTACGTTGCCACCGTTTCCGTCTT
TGTTTATTCCTTTCTTGGTGTCTTAGGTGTAGCTAGTGTTTGGTTCTGGA
TTGAACGTTTGCTTGATGTTTCCTTCATCGCCGATGTCATTCTTTCATTC
TTCTTCCCTCCTTATGACAAGAACGGCCACTTATTATACGATACTCAACC
TTCAGACGCTCGCAACCGATACCTCAAGACCTGGTTCGTCCCGGACGTCG
TCTCAGCTTTTCCGTGGGACATTGTAGTCCTGGCCGTTGTAGGCACTCAG
AGCGACCAACACTTGCTTCAGTTACCTCGTTTTCTTCGCATTGTGCGTCT
CTTCAAGCTTGTGCGCCTCTTCCGCTTTCTCCGTCTGTCCGCCGTCTTCA
GGTTCTTCGAGGTCAAGTTCAGGCTCAAGTACGGTCATGTGCGCCTCGTG
TCCTTGTACGTCACCGTCATTCTCATTGCGCATTGGTTTGCGTGCGCCTT
CTTCTATTTTGGCTCCCTTGGTCTGGACAATCCATGGACAGCTGAAGATT
ATGTGCCGGCAGATTTGTTTGGCAAGTACATGACCGCTCTGTACTTTTCG
GTGTACACCGTCACCACCATTGGGTATGGCGATGTCACGCCGGAGAACAC
AGTTGAACGAACGTACACCACCATCATCATGTTTTTGGGAGCGGCCTGCT
TTGCGTACGTCATCTCACAAGTGTCCAACATATCCGTTGAGCTCAACCGG
TCATCTGAACGTTTCCGAAACACAATGGATGAACTGACGGACCTTCAACA
GTCAAGGGACCTTCCACAGGATCTTGTCACACAGATTCGGCTATACTTTC
ATCGCGCAAACCGTAGTCCTGAGCTTGAGTGTGAACGCTCATTGCTCAAT
AGAATGACCAGAGGCCATCGAATGCAAGTTTTGAAACATATCTATAGCAC
ACGTCTTACCAACTCCAAGCTGTTCGAAAGAATCCCGCCTGCCGCCCTCG
ATAACGTTTACGACAAGGTTCGAGAGAAGTTTTTCTTGAGCGGGCAGTGT
CTTTACAAGCATGGCGAAAGTCCAAAGAGCTTCTTCATTTTGGTAGATGG
CAAGGTTAGAATTGAGGAGCAAGGCGAACAGCCAGTTACGATAACCACCC
CTGGTAAGATGTTTGGGGATAGTGACCTCCTGTTTTACCAAAAACGGCAA
GGGAAGGCAGTATGTTCCGATTTCACAACCGTGATATGCGTTCCGCGTGA
AGCCGTGATGGAGGTATTACAGGATCACGAAATGGAACTAAAGAGGCTAA
GGGACCGAGAGGCTCTTAAACTGTGGGAGAGGGCAACCAAAAACGTGAAA
CAACAAATTCAATACGTGAGGTTTGCAAGGACGTTGCGCTGCAGTGCTGA
AGAGTACATGCGCAATAAAGGAAAGGATATCAAGATGTGCAACCCGGATA
CGTCGACCCAGGCGATTTTGTCAGGTTTGAGAAACGGGGACGAGGCTCTG
CATGTCAAAGCGGGGGAAACCGGTACGGCTCAAAGAAAGGAACAGAGTGG
CACTGGTGGAGCTGCGGGACAAGGCAAGGAATATGCCAGTATTACAGAAC
TGAAGGCTGAGCTGGAACGCAAGGTGAAGCACATCCACCAGCTGGAGAAG
AAGCTGGAGTCGGTACAGCGTCACCTTGCTGAGGTGGCGAAAGTAGTAAA
GCTAGAGCATTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:790014..792576+

>Ggra5216.t1 ID=Ggra5216.t1|Name=Ggra5216.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1989bp|location=Sequence derived from alignment at tig00000069_pilon:790014..792576+ (Gracilaria gracilis GNS1m male)
ATGGCCGATGCCAAGCGTGTGCAACAGCTGCCGTTCGCGCCGCGTCCCGC
TCTTCAGTTGCTGTCGTCCGCAATCTTTCCGTATCTCTCCGTTCATCCGC
TCGTGCACAGCCGCCCCTCTATATACACACCTTACTTGGCTCGTTTTAGT
GCGTCCTCATGGCCCCGACTTCCCCGCCGCCTCGATGGTACCTTGCGCAC
CACCGACTCCTCCGCCTCGGATTACAATGACCTCCCTCGTCGCACCTCTG
ACTCCGAGCCGCCGAAGCGTCATTCCGTCTCCCCTCCTGCAAACACCGAC
GATGTGCAGATGCGCAATCGCGTCAACGTTCTTCTCAACGAGCAGGCCTT
AGAGCATCACGCCCACAGCTCCGATTATTCTCTTCGAAACAAACTTGTTC
ATCATCGCCCACATTCATCGCATGGCTTTCTCACCTTCCGCCCAGCCTGG
GACATGTTCATGCTCGCCTTGTTGGTTTACGTTGCCACCGTTTCCGTCTT
TGTTTATTCCTTTCTTGGTGTCTTAGGTGTAGCTAGTGTTTGGTTCTGGA
TTGAACGTTTGCTTGATGTTTCCTTCATCGCCGATGTCATTCTTTCATTC
TTCTTCCCTCCTTATGACAAGAACGGCCACTTATTATACGATACTCAACC
TTCAGACGCTCGCAACCGATACCTCAAGACCTGGTTCGTCCCGGACGTCG
TCTCAGCTTTTCCGTGGGACATTGTAGTCCTGGCCGTTGTAGGCACTCAG
AGCGACCAACACTTGCTTCAGTTACCTCGTTTTCTTCGCATTGTGCGTCT
CTTCAAGCTTGTGCGCCTCTTCCGCTTTCTCCGTCTGTCCGCCGTCTTCA
GGTTCTTCGAGGTCAAGTTCAGGCTCAAGTACGGTCATGTGCGCCTCGTG
TCCTTGTACGTCACCGTCATTCTCATTGCGCATTGGTTTGCGTGCGCCTT
CTTCTATTTTGGCTCCCTTGGTCTGGACAATCCATGGACAGCTGAAGATT
ATGTGCCGGCAGATTTGTTTGGCAAGTACATGACCGCTCTGTACTTTTCG
GTGTACACCGTCACCACCATTGGGTATGGCGATGTCACGCCGGAGAACAC
AGTTGAACGAACGTACACCACCATCATCATGTTTTTGGGAGCGGCCTGCT
TTGCTCAAGGGACCTTCCACAGGATCTTAATGACCAGAGGCCATCGAATG
CAAGTTTTGAAACATATCTATAGCACACGTCTTACCAACTCCAAGCTGTT
CGAAAGAATCCCGCCTGCCGCCCTCGATAACGTTTACGACAAGGTTCGAG
AGAAGTTTTTCTTGAGCGGGCAGTGTCTTTACAAGCATGGCGAAAGTCCA
AAGAGCTTCTTCATTTTGGTAGATGGCAAGGTTAGAATTGAGGAGCAAGG
CGAACAGCCAGTTACGATAACCACCCCTGGTAAGATGTTTGGGGATAGTG
ACCTCCTGTTTTACCAAAAACGGCAAGGGAAGGCAGTATGTTCCGATTTC
ACAACCGTGATATGCGTTCCGCGTGAAGCCGTGATGGAGGTATTACAGGA
TCACGAAATGGAACTAAAGAGGCTAAGGGACCGAGAGGCTCTTAAACTGT
GGGAGAGGGCAACCAAAAACGTGAAACAACAAATTCAATACGTGAGGTTT
GCAAGGACGTTGCGCTGCAGTGCTGAAGAGTACATGCGCAATAAAGGAAA
GGATATCAAGATGTGCAACCCGGATACGTCGACCCAGGCGATTTTGTCAG
GTTTGAGAAACGGGGACGAGGCTCTGCATGTCAAAGCGGGGGAAACCGGT
ACGGCTCAAAGAAAGGAACAGAGTGGCACTGGTGGAGCTGCGGGACAAGG
CAAGGAATATGCCAGTATTACAGAACTGAAGGCTGAGCTGGAACGCAAGG
TGAAGCACATCCACCAGCTGGAGAAGAAGCTGGAGTCGGTACAGCGTCAC
CTTGCTGAGGTGGCGAAAGTAGTAAAGCTAGAGCATTGA
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