Ggra5215.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5215.t1
Unique Name	Ggra5215.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	539

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:784504..786120 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272952.HpaP804167
PFAMs	Inos-1-P_synth,NAD_binding_5
Max annot lvl	4776\|Peronosporales
KEGG rclass	RC01804
KEGG ko	ko:K01858
KEGG Reaction	R07324
KEGG Pathway	ko00521,ko00562,ko01100,ko01130,map00521,map00562,map01100,map01130
Evalue	3.53e-241
EggNOG OGs	COG1260@1\|root,KOG0693@2759\|Eukaryota,3QDWU@4776\|Peronosporales
EC	5.5.1.4
Description	Myo-inositol-1-phosphate synthase
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5215	Ggra5215	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 784504..786120 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5215.t1.stop1	Ggra5215.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 784504..784506 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5215.t1.CDS1	Ggra5215.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 784504..786120 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5215.t1.exon1	Ggra5215.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 784504..786120 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5215.t1.start1	Ggra5215.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 786118..786120 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5215.t1	Ggra5215.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 784504..786120 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:784504..786120-
coding sequence from alignment at tig00000069_pilon:784504..786120-

mRNA sequence

>Ggra5215.t1 ID=Ggra5215.t1|Name=Ggra5215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=539bp
MVFTNRFHVDAPHVREDEDAIEADFLYTTSKVSVEFDGASVTPSTECYTF
RTSKNVAKVGVMLVGWGGNNGSTFTAANYANTHQITWNTKTGVQTPNYFG
SVLLSSTVRIGHDHKGHDVYIPMHSVLPMLDPKDIVIGGWDINDANLAHA
MQRAQVLDYDLQRQLIPQLEQLLPLPSIYYPDFIAANQSDRANNLIAGND
KNAHLEHIRKDIREFKRLNGVERVIVVWTANTERFSELIPGVNDTSENLL
AAIRDSHFEVSPSTIFAVASILEGAPYINGSPQNTFVPGCIELAEQEKVF
IGGDDFKSGQTKMKSVMVDFLVSAGIKPTSIVSYNHLGNNDGKNLSAPSQ
FRSKETSKSNVVDDMVRSNQILYKEGEEPDHVVVIKYVPAVADSKRAMDE
YTSEIFMGGINTIVMHNTCEDSLLATPLIFDLVLLCELSCRITFKREDMT
DFEHFHPVLSLLSYMLKAPMVPPGAPVVNALFKQRQCIENLMRVCAGLPV
ENDLRLEHRMSTRNGLRHAGNGYGTAVYQHTKALNGHH*

spliced messenger RNA

>Ggra5215.t1 ID=Ggra5215.t1|Name=Ggra5215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000069_pilon:784504..786120- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTCACGAATCGCTTTCATGTTGACGCGCCTCATGTCCGTGAGGA
CGAAGATGCCATCGAAGCCGACTTTTTGTATACAACCTCCAAAGTGTCGG
TTGAGTTCGATGGAGCATCTGTCACACCGAGCACCGAATGCTACACATTT
CGCACCTCCAAGAACGTTGCAAAAGTCGGTGTCATGCTCGTAGGCTGGGG
CGGTAACAACGGCTCCACTTTCACTGCCGCCAATTATGCTAACACTCATC
AAATCACCTGGAACACCAAAACCGGTGTCCAGACTCCAAACTACTTTGGA
TCTGTCTTGCTCTCGTCTACAGTTCGTATAGGTCACGATCACAAAGGGCA
TGATGTGTACATTCCTATGCACTCAGTGCTTCCTATGCTTGACCCTAAAG
ACATTGTCATAGGCGGCTGGGATATTAACGATGCAAATCTGGCTCACGCG
ATGCAGCGTGCACAAGTTCTTGACTATGACTTACAGCGACAACTCATTCC
CCAACTCGAGCAGCTGCTCCCGCTCCCCTCTATCTACTACCCAGACTTCA
TCGCTGCAAACCAAAGTGACCGAGCGAACAATCTCATCGCTGGAAATGAT
AAGAATGCTCACTTAGAACATATAAGAAAAGATATCCGCGAGTTTAAGCG
ACTCAACGGCGTTGAGCGCGTGATTGTCGTTTGGACTGCCAACACCGAAC
GTTTTTCGGAGCTCATTCCTGGTGTTAACGATACTTCTGAAAACTTGCTT
GCTGCCATTCGGGACTCGCATTTTGAGGTTTCTCCCTCCACTATTTTCGC
AGTTGCGTCCATTCTAGAGGGAGCTCCGTACATCAATGGTTCCCCACAAA
ACACTTTTGTACCTGGCTGTATTGAACTTGCTGAACAGGAGAAAGTTTTT
ATCGGCGGAGATGACTTCAAGTCTGGTCAGACCAAAATGAAGTCGGTTAT
GGTGGATTTTCTGGTCAGCGCAGGGATTAAACCCACTTCGATTGTTTCAT
ATAACCATCTAGGAAACAATGACGGAAAGAATCTTTCCGCTCCTAGTCAG
TTCCGCTCCAAGGAAACGTCGAAATCGAACGTTGTTGACGATATGGTTCG
CTCAAATCAAATTCTATACAAGGAAGGAGAAGAACCTGATCATGTCGTTG
TTATCAAATACGTTCCTGCCGTTGCTGACTCTAAGAGAGCCATGGATGAA
TACACTTCCGAAATATTCATGGGAGGCATCAATACCATCGTGATGCATAA
CACATGTGAAGACTCTCTGCTGGCGACACCTCTAATTTTTGATCTCGTTC
TTTTATGTGAGCTCTCATGTCGTATCACATTCAAGCGGGAAGATATGACT
GACTTCGAACACTTTCACCCTGTGCTTTCTTTATTGTCTTACATGTTAAA
GGCCCCTATGGTTCCACCGGGGGCCCCCGTTGTCAATGCTCTATTCAAAC
AGAGGCAATGCATTGAAAACTTGATGCGAGTCTGCGCTGGCTTGCCCGTC
GAGAACGATCTACGCCTGGAACATCGGATGTCTACCCGGAACGGTCTAAG
ACATGCAGGAAACGGATACGGCACTGCCGTTTACCAGCACACGAAGGCTT
TGAACGGCCATCACTAG

protein sequence of Ggra5215.t1

>Ggra5215.t1 ID=Ggra5215.t1|Name=Ggra5215.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=539bp
MVFTNRFHVDAPHVREDEDAIEADFLYTTSKVSVEFDGASVTPSTECYTF
RTSKNVAKVGVMLVGWGGNNGSTFTAANYANTHQITWNTKTGVQTPNYFG
SVLLSSTVRIGHDHKGHDVYIPMHSVLPMLDPKDIVIGGWDINDANLAHA
MQRAQVLDYDLQRQLIPQLEQLLPLPSIYYPDFIAANQSDRANNLIAGND
KNAHLEHIRKDIREFKRLNGVERVIVVWTANTERFSELIPGVNDTSENLL
AAIRDSHFEVSPSTIFAVASILEGAPYINGSPQNTFVPGCIELAEQEKVF
IGGDDFKSGQTKMKSVMVDFLVSAGIKPTSIVSYNHLGNNDGKNLSAPSQ
FRSKETSKSNVVDDMVRSNQILYKEGEEPDHVVVIKYVPAVADSKRAMDE
YTSEIFMGGINTIVMHNTCEDSLLATPLIFDLVLLCELSCRITFKREDMT
DFEHFHPVLSLLSYMLKAPMVPPGAPVVNALFKQRQCIENLMRVCAGLPV
ENDLRLEHRMSTRNGLRHAGNGYGTAVYQHTKALNGHH*

mRNA from alignment at tig00000069_pilon:784504..786120-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5215.t1 ID=Ggra5215.t1|Name=Ggra5215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1617bp|location=Sequence derived from alignment at tig00000069_pilon:784504..786120- (Gracilaria gracilis GNS1m male)
ATGGTGTTCACGAATCGCTTTCATGTTGACGCGCCTCATGTCCGTGAGGA
CGAAGATGCCATCGAAGCCGACTTTTTGTATACAACCTCCAAAGTGTCGG
TTGAGTTCGATGGAGCATCTGTCACACCGAGCACCGAATGCTACACATTT
CGCACCTCCAAGAACGTTGCAAAAGTCGGTGTCATGCTCGTAGGCTGGGG
CGGTAACAACGGCTCCACTTTCACTGCCGCCAATTATGCTAACACTCATC
AAATCACCTGGAACACCAAAACCGGTGTCCAGACTCCAAACTACTTTGGA
TCTGTCTTGCTCTCGTCTACAGTTCGTATAGGTCACGATCACAAAGGGCA
TGATGTGTACATTCCTATGCACTCAGTGCTTCCTATGCTTGACCCTAAAG
ACATTGTCATAGGCGGCTGGGATATTAACGATGCAAATCTGGCTCACGCG
ATGCAGCGTGCACAAGTTCTTGACTATGACTTACAGCGACAACTCATTCC
CCAACTCGAGCAGCTGCTCCCGCTCCCCTCTATCTACTACCCAGACTTCA
TCGCTGCAAACCAAAGTGACCGAGCGAACAATCTCATCGCTGGAAATGAT
AAGAATGCTCACTTAGAACATATAAGAAAAGATATCCGCGAGTTTAAGCG
ACTCAACGGCGTTGAGCGCGTGATTGTCGTTTGGACTGCCAACACCGAAC
GTTTTTCGGAGCTCATTCCTGGTGTTAACGATACTTCTGAAAACTTGCTT
GCTGCCATTCGGGACTCGCATTTTGAGGTTTCTCCCTCCACTATTTTCGC
AGTTGCGTCCATTCTAGAGGGAGCTCCGTACATCAATGGTTCCCCACAAA
ACACTTTTGTACCTGGCTGTATTGAACTTGCTGAACAGGAGAAAGTTTTT
ATCGGCGGAGATGACTTCAAGTCTGGTCAGACCAAAATGAAGTCGGTTAT
GGTGGATTTTCTGGTCAGCGCAGGGATTAAACCCACTTCGATTGTTTCAT
ATAACCATCTAGGAAACAATGACGGAAAGAATCTTTCCGCTCCTAGTCAG
TTCCGCTCCAAGGAAACGTCGAAATCGAACGTTGTTGACGATATGGTTCG
CTCAAATCAAATTCTATACAAGGAAGGAGAAGAACCTGATCATGTCGTTG
TTATCAAATACGTTCCTGCCGTTGCTGACTCTAAGAGAGCCATGGATGAA
TACACTTCCGAAATATTCATGGGAGGCATCAATACCATCGTGATGCATAA
CACATGTGAAGACTCTCTGCTGGCGACACCTCTAATTTTTGATCTCGTTC
TTTTATGTGAGCTCTCATGTCGTATCACATTCAAGCGGGAAGATATGACT
GACTTCGAACACTTTCACCCTGTGCTTTCTTTATTGTCTTACATGTTAAA
GGCCCCTATGGTTCCACCGGGGGCCCCCGTTGTCAATGCTCTATTCAAAC
AGAGGCAATGCATTGAAAACTTGATGCGAGTCTGCGCTGGCTTGCCCGTC
GAGAACGATCTACGCCTGGAACATCGGATGTCTACCCGGAACGGTCTAAG
ACATGCAGGAAACGGATACGGCACTGCCGTTTACCAGCACACGAAGGCTT
TGAACGGCCATCACTAG

Coding sequence (CDS) from alignment at tig00000069_pilon:784504..786120-

>Ggra5215.t1 ID=Ggra5215.t1|Name=Ggra5215.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1617bp|location=Sequence derived from alignment at tig00000069_pilon:784504..786120- (Gracilaria gracilis GNS1m male)
ATGGTGTTCACGAATCGCTTTCATGTTGACGCGCCTCATGTCCGTGAGGA
CGAAGATGCCATCGAAGCCGACTTTTTGTATACAACCTCCAAAGTGTCGG
TTGAGTTCGATGGAGCATCTGTCACACCGAGCACCGAATGCTACACATTT
CGCACCTCCAAGAACGTTGCAAAAGTCGGTGTCATGCTCGTAGGCTGGGG
CGGTAACAACGGCTCCACTTTCACTGCCGCCAATTATGCTAACACTCATC
AAATCACCTGGAACACCAAAACCGGTGTCCAGACTCCAAACTACTTTGGA
TCTGTCTTGCTCTCGTCTACAGTTCGTATAGGTCACGATCACAAAGGGCA
TGATGTGTACATTCCTATGCACTCAGTGCTTCCTATGCTTGACCCTAAAG
ACATTGTCATAGGCGGCTGGGATATTAACGATGCAAATCTGGCTCACGCG
ATGCAGCGTGCACAAGTTCTTGACTATGACTTACAGCGACAACTCATTCC
CCAACTCGAGCAGCTGCTCCCGCTCCCCTCTATCTACTACCCAGACTTCA
TCGCTGCAAACCAAAGTGACCGAGCGAACAATCTCATCGCTGGAAATGAT
AAGAATGCTCACTTAGAACATATAAGAAAAGATATCCGCGAGTTTAAGCG
ACTCAACGGCGTTGAGCGCGTGATTGTCGTTTGGACTGCCAACACCGAAC
GTTTTTCGGAGCTCATTCCTGGTGTTAACGATACTTCTGAAAACTTGCTT
GCTGCCATTCGGGACTCGCATTTTGAGGTTTCTCCCTCCACTATTTTCGC
AGTTGCGTCCATTCTAGAGGGAGCTCCGTACATCAATGGTTCCCCACAAA
ACACTTTTGTACCTGGCTGTATTGAACTTGCTGAACAGGAGAAAGTTTTT
ATCGGCGGAGATGACTTCAAGTCTGGTCAGACCAAAATGAAGTCGGTTAT
GGTGGATTTTCTGGTCAGCGCAGGGATTAAACCCACTTCGATTGTTTCAT
ATAACCATCTAGGAAACAATGACGGAAAGAATCTTTCCGCTCCTAGTCAG
TTCCGCTCCAAGGAAACGTCGAAATCGAACGTTGTTGACGATATGGTTCG
CTCAAATCAAATTCTATACAAGGAAGGAGAAGAACCTGATCATGTCGTTG
TTATCAAATACGTTCCTGCCGTTGCTGACTCTAAGAGAGCCATGGATGAA
TACACTTCCGAAATATTCATGGGAGGCATCAATACCATCGTGATGCATAA
CACATGTGAAGACTCTCTGCTGGCGACACCTCTAATTTTTGATCTCGTTC
TTTTATGTGAGCTCTCATGTCGTATCACATTCAAGCGGGAAGATATGACT
GACTTCGAACACTTTCACCCTGTGCTTTCTTTATTGTCTTACATGTTAAA
GGCCCCTATGGTTCCACCGGGGGCCCCCGTTGTCAATGCTCTATTCAAAC
AGAGGCAATGCATTGAAAACTTGATGCGAGTCTGCGCTGGCTTGCCCGTC
GAGAACGATCTACGCCTGGAACATCGGATGTCTACCCGGAACGGTCTAAG
ACATGCAGGAAACGGATACGGCACTGCCGTTTACCAGCACACGAAGGCTT
TGAACGGCCATCACTAG