Ggra5214.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5214.t1
Unique NameGgra5214.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:782842..784005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708026.1
Preferred nameTXLNB
PFAMsTaxilin
Max annot lvl2759|Eukaryota
KEGG rclassRC00141
KEGG koko:K06013,ko:K19535
KEGG ReactionR09845
KEGG Pathwayko00900,ko01130,map00900,map01130
GOsGO:0001775,GO:0002376,GO:0003674,GO:0005102,GO:0005125,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008150,GO:0008283,GO:0009966,GO:0009987,GO:0010033,GO:0010469,GO:0010564,GO:0010646,GO:0010720,GO:0010975,GO:0010976,GO:0012505,GO:0016020,GO:0019221,GO:0022008,GO:0023051,GO:0023052,GO:0030016,GO:0030017,GO:0030154,GO:0030278,GO:0030372,GO:0030500,GO:0030545,GO:0031090,GO:0031344,GO:0031346,GO:0031965,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0034097,GO:0042113,GO:0042221,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045321,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046649,GO:0046982,GO:0046983,GO:0048018,GO:0048518,GO:0048522,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0065009,GO:0070167,GO:0070851,GO:0070887,GO:0071310,GO:0071345,GO:0098772,GO:0099080,GO:0099081,GO:0099512,GO:0120035,GO:2000026
Evalue8.91e-13
EggNOG OGsKOG1850@1|root,KOG1850@2759|Eukaryota
EC3.4.24.84
Descriptionsyntaxin binding
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5214Ggra5214Gracilaria gracilis GNS1m malegenetig00000069_pilon 782842..784005 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5214.t1.start1Ggra5214.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 782842..782844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5214.t1.CDS1Ggra5214.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 782842..784005 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5214.t1.exon1Ggra5214.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 782842..784005 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5214.t1.stop1Ggra5214.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 784003..784005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5214.t1Ggra5214.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 782842..784005 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5214.t1 ID=Ggra5214.t1|Name=Ggra5214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MTSPEPAAKNDEETLRQLLRDRIAQLESREEDPPKSADEQAAYEAFHVAS
TAARALVADSEISPEEKLRVLQLMYRDCISNVRDLEYDLGMEEKRLSVAE
LDYSELGEEMRKIEASAEKLKVQSKQLSKENKIRLEISAKKSTEEREKRE
EICKKFDEAMEEINMKLNQGEGREREDDDPTEELEAQLDQLQAAYDKREV
FYEKTLEETTGEEKQYVDRLQKAENEFSKDQLQLGKEKRMFEELRKRATH
TNKEADTRLLKRDEIMNARKKRENNLNRQSADLKRLRQSLTDLRKAMSKL
NKETEELKIKSKETISQVKSCEDELEFWKAKTKSELDKRETLERVCRTLT
EERTVMRKDVQGMKEAWRELENEIENLRMEINEPEAL*
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spliced messenger RNA

>Ggra5214.t1 ID=Ggra5214.t1|Name=Ggra5214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000069_pilon:782842..784005+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCACCCGAGCCTGCAGCCAAGAATGATGAAGAAACACTACGTCA
GCTATTGCGGGACCGCATCGCCCAGCTGGAAAGCAGAGAAGAAGACCCCC
CAAAATCCGCGGATGAGCAAGCGGCATATGAAGCATTTCATGTTGCTTCC
ACAGCCGCCCGAGCATTAGTCGCCGACAGTGAAATATCTCCAGAGGAGAA
GTTGCGAGTACTGCAGTTAATGTACAGAGATTGTATATCAAATGTGCGTG
ACCTAGAGTATGATTTAGGCATGGAGGAAAAGAGATTAAGCGTTGCGGAG
TTAGATTACAGCGAACTGGGCGAGGAGATGCGAAAGATTGAGGCTTCAGC
AGAAAAACTAAAAGTCCAGTCGAAGCAACTGTCCAAAGAGAACAAGATAA
GGCTTGAAATTTCGGCGAAGAAGAGTACGGAGGAGCGAGAAAAGAGGGAA
GAGATTTGCAAGAAGTTTGATGAAGCGATGGAAGAGATTAACATGAAACT
GAATCAAGGAGAGGGTAGAGAAAGAGAAGATGATGACCCAACCGAAGAAT
TAGAAGCTCAACTGGACCAACTTCAGGCAGCATACGACAAGAGGGAAGTC
TTCTATGAAAAGACCCTAGAAGAAACAACCGGCGAAGAAAAGCAGTACGT
CGATCGGTTGCAGAAGGCTGAGAATGAGTTTAGTAAAGATCAATTGCAAC
TCGGGAAAGAAAAGAGGATGTTTGAGGAGCTACGAAAACGAGCTACACAC
ACAAACAAAGAAGCAGACACGCGTCTTCTTAAACGCGATGAAATCATGAA
CGCTAGGAAAAAACGCGAGAACAATCTCAACAGGCAGTCCGCTGACTTGA
AGCGGCTTCGACAGAGCTTAACAGATTTACGAAAGGCAATGAGCAAACTC
AACAAAGAGACTGAGGAGTTAAAGATAAAATCTAAGGAAACAATATCACA
AGTTAAATCTTGCGAAGATGAGCTTGAGTTTTGGAAGGCAAAAACTAAAA
GCGAGCTGGACAAGAGAGAAACACTCGAAAGAGTTTGTAGAACACTCACT
GAAGAAAGAACGGTAATGAGGAAAGACGTACAGGGTATGAAGGAAGCATG
GAGAGAGCTAGAAAACGAAATCGAGAATCTAAGAATGGAGATCAACGAAC
CTGAGGCTTTGTAA
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protein sequence of Ggra5214.t1

>Ggra5214.t1 ID=Ggra5214.t1|Name=Ggra5214.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MTSPEPAAKNDEETLRQLLRDRIAQLESREEDPPKSADEQAAYEAFHVAS
TAARALVADSEISPEEKLRVLQLMYRDCISNVRDLEYDLGMEEKRLSVAE
LDYSELGEEMRKIEASAEKLKVQSKQLSKENKIRLEISAKKSTEEREKRE
EICKKFDEAMEEINMKLNQGEGREREDDDPTEELEAQLDQLQAAYDKREV
FYEKTLEETTGEEKQYVDRLQKAENEFSKDQLQLGKEKRMFEELRKRATH
TNKEADTRLLKRDEIMNARKKRENNLNRQSADLKRLRQSLTDLRKAMSKL
NKETEELKIKSKETISQVKSCEDELEFWKAKTKSELDKRETLERVCRTLT
EERTVMRKDVQGMKEAWRELENEIENLRMEINEPEAL*
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mRNA from alignment at tig00000069_pilon:782842..784005+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5214.t1 ID=Ggra5214.t1|Name=Ggra5214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000069_pilon:782842..784005+ (Gracilaria gracilis GNS1m male)
ATGACTTCACCCGAGCCTGCAGCCAAGAATGATGAAGAAACACTACGTCA
GCTATTGCGGGACCGCATCGCCCAGCTGGAAAGCAGAGAAGAAGACCCCC
CAAAATCCGCGGATGAGCAAGCGGCATATGAAGCATTTCATGTTGCTTCC
ACAGCCGCCCGAGCATTAGTCGCCGACAGTGAAATATCTCCAGAGGAGAA
GTTGCGAGTACTGCAGTTAATGTACAGAGATTGTATATCAAATGTGCGTG
ACCTAGAGTATGATTTAGGCATGGAGGAAAAGAGATTAAGCGTTGCGGAG
TTAGATTACAGCGAACTGGGCGAGGAGATGCGAAAGATTGAGGCTTCAGC
AGAAAAACTAAAAGTCCAGTCGAAGCAACTGTCCAAAGAGAACAAGATAA
GGCTTGAAATTTCGGCGAAGAAGAGTACGGAGGAGCGAGAAAAGAGGGAA
GAGATTTGCAAGAAGTTTGATGAAGCGATGGAAGAGATTAACATGAAACT
GAATCAAGGAGAGGGTAGAGAAAGAGAAGATGATGACCCAACCGAAGAAT
TAGAAGCTCAACTGGACCAACTTCAGGCAGCATACGACAAGAGGGAAGTC
TTCTATGAAAAGACCCTAGAAGAAACAACCGGCGAAGAAAAGCAGTACGT
CGATCGGTTGCAGAAGGCTGAGAATGAGTTTAGTAAAGATCAATTGCAAC
TCGGGAAAGAAAAGAGGATGTTTGAGGAGCTACGAAAACGAGCTACACAC
ACAAACAAAGAAGCAGACACGCGTCTTCTTAAACGCGATGAAATCATGAA
CGCTAGGAAAAAACGCGAGAACAATCTCAACAGGCAGTCCGCTGACTTGA
AGCGGCTTCGACAGAGCTTAACAGATTTACGAAAGGCAATGAGCAAACTC
AACAAAGAGACTGAGGAGTTAAAGATAAAATCTAAGGAAACAATATCACA
AGTTAAATCTTGCGAAGATGAGCTTGAGTTTTGGAAGGCAAAAACTAAAA
GCGAGCTGGACAAGAGAGAAACACTCGAAAGAGTTTGTAGAACACTCACT
GAAGAAAGAACGGTAATGAGGAAAGACGTACAGGGTATGAAGGAAGCATG
GAGAGAGCTAGAAAACGAAATCGAGAATCTAAGAATGGAGATCAACGAAC
CTGAGGCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:782842..784005+

>Ggra5214.t1 ID=Ggra5214.t1|Name=Ggra5214.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000069_pilon:782842..784005+ (Gracilaria gracilis GNS1m male)
ATGACTTCACCCGAGCCTGCAGCCAAGAATGATGAAGAAACACTACGTCA
GCTATTGCGGGACCGCATCGCCCAGCTGGAAAGCAGAGAAGAAGACCCCC
CAAAATCCGCGGATGAGCAAGCGGCATATGAAGCATTTCATGTTGCTTCC
ACAGCCGCCCGAGCATTAGTCGCCGACAGTGAAATATCTCCAGAGGAGAA
GTTGCGAGTACTGCAGTTAATGTACAGAGATTGTATATCAAATGTGCGTG
ACCTAGAGTATGATTTAGGCATGGAGGAAAAGAGATTAAGCGTTGCGGAG
TTAGATTACAGCGAACTGGGCGAGGAGATGCGAAAGATTGAGGCTTCAGC
AGAAAAACTAAAAGTCCAGTCGAAGCAACTGTCCAAAGAGAACAAGATAA
GGCTTGAAATTTCGGCGAAGAAGAGTACGGAGGAGCGAGAAAAGAGGGAA
GAGATTTGCAAGAAGTTTGATGAAGCGATGGAAGAGATTAACATGAAACT
GAATCAAGGAGAGGGTAGAGAAAGAGAAGATGATGACCCAACCGAAGAAT
TAGAAGCTCAACTGGACCAACTTCAGGCAGCATACGACAAGAGGGAAGTC
TTCTATGAAAAGACCCTAGAAGAAACAACCGGCGAAGAAAAGCAGTACGT
CGATCGGTTGCAGAAGGCTGAGAATGAGTTTAGTAAAGATCAATTGCAAC
TCGGGAAAGAAAAGAGGATGTTTGAGGAGCTACGAAAACGAGCTACACAC
ACAAACAAAGAAGCAGACACGCGTCTTCTTAAACGCGATGAAATCATGAA
CGCTAGGAAAAAACGCGAGAACAATCTCAACAGGCAGTCCGCTGACTTGA
AGCGGCTTCGACAGAGCTTAACAGATTTACGAAAGGCAATGAGCAAACTC
AACAAAGAGACTGAGGAGTTAAAGATAAAATCTAAGGAAACAATATCACA
AGTTAAATCTTGCGAAGATGAGCTTGAGTTTTGGAAGGCAAAAACTAAAA
GCGAGCTGGACAAGAGAGAAACACTCGAAAGAGTTTGTAGAACACTCACT
GAAGAAAGAACGGTAATGAGGAAAGACGTACAGGGTATGAAGGAAGCATG
GAGAGAGCTAGAAAACGAAATCGAGAATCTAAGAATGGAGATCAACGAAC
CTGAGGCTTTGTAA
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