Ggra5211.t3 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5211.t3
Unique NameGgra5211.t3
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length549
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:775292..777430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709189.1
Preferred nameLUC7
PFAMsLUC7
Max annot lvl2759|Eukaryota
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005685,GO:0005737,GO:0005829,GO:0006139,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0065003,GO:0071004,GO:0071010,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue1.53e-12
EggNOG OGsCOG5200@1|root,KOG0796@2759|Eukaryota
DescriptionmRNA splice site selection
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5211Ggra5211Gracilaria gracilis GNS1m malegenetig00000069_pilon 775292..777430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3Ggra5211.t3Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 775292..777430 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3.start1Ggra5211.t3.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 775292..775294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3.CDS1Ggra5211.t3.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 775292..776579 +
Ggra5211.t3.CDS2Ggra5211.t3.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 776677..776889 +
Ggra5211.t3.CDS3Ggra5211.t3.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 777057..777124 +
Ggra5211.t3.CDS4Ggra5211.t3.CDS4Gracilaria gracilis GNS1m maleCDStig00000069_pilon 777219..777244 +
Ggra5211.t3.CDS5Ggra5211.t3.CDS5Gracilaria gracilis GNS1m maleCDStig00000069_pilon 777379..777430 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3.exon1Ggra5211.t3.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 775292..776579 +
Ggra5211.t3.exon2Ggra5211.t3.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 776677..776889 +
Ggra5211.t3.exon3Ggra5211.t3.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 777057..777124 +
Ggra5211.t3.exon4Ggra5211.t3.exon4Gracilaria gracilis GNS1m maleexontig00000069_pilon 777219..777244 +
Ggra5211.t3.exon5Ggra5211.t3.exon5Gracilaria gracilis GNS1m maleexontig00000069_pilon 777379..777430 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3.intron1Ggra5211.t3.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 776580..776676 +
Ggra5211.t3.intron2Ggra5211.t3.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 776890..777056 +
Ggra5211.t3.intron3Ggra5211.t3.intron3Gracilaria gracilis GNS1m maleintrontig00000069_pilon 777125..777218 +
Ggra5211.t3.intron4Ggra5211.t3.intron4Gracilaria gracilis GNS1m maleintrontig00000069_pilon 777245..777378 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5211.t3.stop1Ggra5211.t3.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 777428..777430 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5211.t3 ID=Ggra5211.t3|Name=Ggra5211.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp
MAYDSVRAQLDKLLGVDRNGPLTDSANNEPPNYRDAKFCKHFLLGFCPND
LYIKQRSEPGSCRLEHSEAAKSAFEKDEAEGRVREEERFRWMRALLSECR
TIVGEEDRKIRGQARRLQESYGCGGDLSGLMIRNFDTLKKLGMVRQNARI
RVLSEMDDSELTSEGGVTLAQSSRGPSADANVESIANPVEKKTSDVPNEI
QPASAQDEKPIKAKGSESDTEKETGEEDDDDDDDDMDGFGLIKVIPAGNS
PIKDGEEESAAPVENGAAVHSKASSSQGDPTMINKDSPLQQNELNPAERG
KGDKHALDDDSDKKQLPAPQEKDVDLRSQFDKHNETGATPSKAENNLEVE
RSQMNFGEKKSRAGQVSGSKLTANGKEEENNVMDKFYETGAGPDGLLMLD
RKQSKRVCACCGGYISLVDAESRLLSHYGALVTEDMMIEITVALATTTVD
DHVEITVVQSEEVDMMIGIAIHTLVGLSTVRTGDKVDPNGIQIPATAMIT
EEEKPTLYTNALRFRKSSVDGTLVGICRNSLVWNCPERMAFSLSMDVM*
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spliced messenger RNA

>Ggra5211.t3 ID=Ggra5211.t3|Name=Ggra5211.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1647bp|location=Sequence derived from alignment at tig00000069_pilon:775292..777430+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTATGACTCAGTACGCGCCCAACTGGATAAGCTACTAGGAGTTGA
TCGCAACGGCCCGCTGACCGACTCCGCCAATAATGAACCTCCCAATTATC
GCGACGCAAAGTTCTGCAAGCACTTTCTCCTCGGGTTTTGTCCCAATGAC
CTTTACATCAAGCAAAGGAGCGAGCCTGGCTCATGTCGCCTGGAACATTC
CGAAGCCGCGAAGTCCGCTTTCGAGAAGGATGAGGCGGAAGGTCGTGTTC
GTGAAGAAGAGAGATTTCGCTGGATGCGTGCCTTGCTCAGCGAGTGCCGC
ACTATTGTTGGCGAGGAAGATCGAAAAATTCGAGGTCAGGCAAGACGCTT
GCAGGAAAGTTATGGATGCGGTGGCGATTTGTCCGGTCTCATGATCCGGA
ACTTCGACACATTGAAAAAGCTTGGAATGGTCCGTCAGAACGCAAGAATT
CGTGTTTTAAGCGAGATGGATGATAGCGAACTCACGTCTGAGGGGGGCGT
CACTTTGGCTCAAAGCTCTCGGGGTCCTTCAGCTGACGCTAATGTCGAAA
GCATCGCAAACCCCGTAGAAAAGAAAACCAGCGATGTGCCTAATGAAATT
CAACCCGCTAGCGCACAAGATGAAAAGCCGATAAAAGCTAAAGGTTCTGA
AAGCGACACCGAAAAAGAAACTGGGGAGGAAGACGATGACGATGACGATG
ACGACATGGACGGTTTTGGGCTCATTAAGGTCATTCCAGCTGGAAACAGT
CCTATAAAGGACGGAGAAGAAGAATCAGCTGCCCCCGTTGAGAACGGTGC
AGCCGTTCATTCGAAGGCGTCTTCTTCACAAGGTGATCCTACTATGATCA
ATAAGGACTCACCACTTCAACAAAACGAGCTCAACCCAGCAGAAAGAGGT
AAGGGAGACAAGCATGCATTAGATGATGATTCTGACAAAAAACAACTTCC
TGCTCCCCAAGAAAAAGATGTCGACTTGAGATCCCAGTTTGACAAACATA
ACGAGACAGGGGCCACGCCATCGAAAGCAGAGAACAACTTGGAAGTTGAG
AGAAGTCAAATGAATTTTGGGGAGAAGAAAAGCAGAGCTGGTCAAGTTTC
TGGTTCAAAATTGACAGCAAATGGAAAGGAAGAAGAGAACAACGTCATGG
ACAAGTTCTACGAGACTGGTGCAGGTCCCGACGGCTTGCTAATGCTTGAT
AGAAAGCAGAGCAAACGTGTGTGTGCATGTTGCGGCGGGTACATAAGCCT
AGTGGATGCCGAATCCCGGTTGTTGTCTCATTATGGCGCGCTCGTCACGG
AGGATATGATGATCGAGATTACGGTCGCTCTCGCAACAACGACGGTGGAC
GATCACGTGGAGATTACCGTAGTTCAAAGCGAGGAAGTCGATATGATGAT
AGGTATCGCGATTCATACTCTGGTAGGTCTCAGCACAGTTCGTACAGGAG
ACAAGGTGGATCCGAATGGAATTCAAATTCCGGCGACGGCTATGATAACA
GAAGAAGAGAAACCAACGTTGTATACAAACGCTTTGAGATTCAGAAAATC
TTCTGTTGATGGTACTCTTGTGGGAATCTGCCGAAATTCTTTAGTATGGA
ACTGTCCGGAACGCATGGCTTTCTCACTTTCCATGGATGTCATGTAA
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protein sequence of Ggra5211.t3

>Ggra5211.t3 ID=Ggra5211.t3|Name=Ggra5211.t3|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=549bp
MAYDSVRAQLDKLLGVDRNGPLTDSANNEPPNYRDAKFCKHFLLGFCPND
LYIKQRSEPGSCRLEHSEAAKSAFEKDEAEGRVREEERFRWMRALLSECR
TIVGEEDRKIRGQARRLQESYGCGGDLSGLMIRNFDTLKKLGMVRQNARI
RVLSEMDDSELTSEGGVTLAQSSRGPSADANVESIANPVEKKTSDVPNEI
QPASAQDEKPIKAKGSESDTEKETGEEDDDDDDDDMDGFGLIKVIPAGNS
PIKDGEEESAAPVENGAAVHSKASSSQGDPTMINKDSPLQQNELNPAERG
KGDKHALDDDSDKKQLPAPQEKDVDLRSQFDKHNETGATPSKAENNLEVE
RSQMNFGEKKSRAGQVSGSKLTANGKEEENNVMDKFYETGAGPDGLLMLD
RKQSKRVCACCGGYISLVDAESRLLSHYGALVTEDMMIEITVALATTTVD
DHVEITVVQSEEVDMMIGIAIHTLVGLSTVRTGDKVDPNGIQIPATAMIT
EEEKPTLYTNALRFRKSSVDGTLVGICRNSLVWNCPERMAFSLSMDVM*
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mRNA from alignment at tig00000069_pilon:775292..777430+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5211.t3 ID=Ggra5211.t3|Name=Ggra5211.t3|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2139bp|location=Sequence derived from alignment at tig00000069_pilon:775292..777430+ (Gracilaria gracilis GNS1m male)
ATGGCCTATGACTCAGTACGCGCCCAACTGGATAAGCTACTAGGAGTTGA
TCGCAACGGCCCGCTGACCGACTCCGCCAATAATGAACCTCCCAATTATC
GCGACGCAAAGTTCTGCAAGCACTTTCTCCTCGGGTTTTGTCCCAATGAC
CTTTACATCAAGCAAAGGAGCGAGCCTGGCTCATGTCGCCTGGAACATTC
CGAAGCCGCGAAGTCCGCTTTCGAGAAGGATGAGGCGGAAGGTCGTGTTC
GTGAAGAAGAGAGATTTCGCTGGATGCGTGCCTTGCTCAGCGAGTGCCGC
ACTATTGTTGGCGAGGAAGATCGAAAAATTCGAGGTCAGGCAAGACGCTT
GCAGGAAAGTTATGGATGCGGTGGCGATTTGTCCGGTCTCATGATCCGGA
ACTTCGACACATTGAAAAAGCTTGGAATGGTCCGTCAGAACGCAAGAATT
CGTGTTTTAAGCGAGATGGATGATAGCGAACTCACGTCTGAGGGGGGCGT
CACTTTGGCTCAAAGCTCTCGGGGTCCTTCAGCTGACGCTAATGTCGAAA
GCATCGCAAACCCCGTAGAAAAGAAAACCAGCGATGTGCCTAATGAAATT
CAACCCGCTAGCGCACAAGATGAAAAGCCGATAAAAGCTAAAGGTTCTGA
AAGCGACACCGAAAAAGAAACTGGGGAGGAAGACGATGACGATGACGATG
ACGACATGGACGGTTTTGGGCTCATTAAGGTCATTCCAGCTGGAAACAGT
CCTATAAAGGACGGAGAAGAAGAATCAGCTGCCCCCGTTGAGAACGGTGC
AGCCGTTCATTCGAAGGCGTCTTCTTCACAAGGTGATCCTACTATGATCA
ATAAGGACTCACCACTTCAACAAAACGAGCTCAACCCAGCAGAAAGAGGT
AAGGGAGACAAGCATGCATTAGATGATGATTCTGACAAAAAACAACTTCC
TGCTCCCCAAGAAAAAGATGTCGACTTGAGATCCCAGTTTGACAAACATA
ACGAGACAGGGGCCACGCCATCGAAAGCAGAGAACAACTTGGAAGTTGAG
AGAAGTCAAATGAATTTTGGGGAGAAGAAAAGCAGAGCTGGTCAAGTTTC
TGGTTCAAAATTGACAGCAAATGGAAAGGAAGAAGAGAACAACGTCATGG
ACAAGTTCTACGAGACTGGTGCAGGTCCCGACGGCTTGCTAATGCTTGAT
AGAAAGCAGAGCAAACGTGTGTGTGCATGTTGCGGCGGGTACATAAGCCT
AGTGGATGCCGAATCCCGGTTGTTGTCTCATTATGGCGGTAAGTCCCACC
ACTCTCTTGCTCAGCTGCGTGCTAAGATTCCAGAAGTCGAAGCAGCATTG
GCAAAAGCACCTCGTTATCCACACGAGACAAATAGCGCTCGTCACGGAGG
ATATGATGATCGAGATTACGGTCGCTCTCGCAACAACGACGGTGGACGAT
CACGTGGAGATTACCGTAGTTCAAAGCGAGGAAGTCGATATGATGATAGG
TATCGCGATTCATACTCTGGTAGGTCTCAGCACAGTTCGTACAGGAGACA
AGGTGGATCCGAATGGAATTCAAATTCCGGCGACGGCTATGATAACAGGT
ACGGTTCGCGTTATAAGAATGATGATTTCGACAACGACAGATCTGCTGGA
CGACATGACAGGTACCATGGGAGAAGAAAGCGTTATCGTTCTCCATCCCC
ACACCGTGAGTCTAGACGTCGACGAAGTTATTACTAAATGGACTATTTCT
TGTTTTTTGACCCAGAAGAAGAGAAACCAACGTTGTATACAAACGCTTTG
AGATTCAGAAAATCTTCTGTTGATGGTACTCTTGTGAGTGAGAGAATGCG
TGTGACCCACGGTAAGAAATCTGGTCAGTTTCCTTTTGTTCTCAATACAA
CATTACTTGCTCTTGCTCTACCCACAGGTGGGAATCTGCCGAAATTCTTT
AGTGTGAGTTAATCCATTTCAGTTTCCCTTCAAGCGCTAAGTCCAGACTC
CTCAAGACCGACAAGTTAGCTGTATATCCGTATGCTAGTTCTTGCATGAA
TGACTAAGGCTTCACCAGAGTTTGTTCAAGGTTATAGATGGAACTGTCCG
GAACGCATGGCTTTCTCACTTTCCATGGATGTCATGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:775292..777430+

>Ggra5211.t3 ID=Ggra5211.t3|Name=Ggra5211.t3|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1647bp|location=Sequence derived from alignment at tig00000069_pilon:775292..777430+ (Gracilaria gracilis GNS1m male)
ATGGCCTATGACTCAGTACGCGCCCAACTGGATAAGCTACTAGGAGTTGA
TCGCAACGGCCCGCTGACCGACTCCGCCAATAATGAACCTCCCAATTATC
GCGACGCAAAGTTCTGCAAGCACTTTCTCCTCGGGTTTTGTCCCAATGAC
CTTTACATCAAGCAAAGGAGCGAGCCTGGCTCATGTCGCCTGGAACATTC
CGAAGCCGCGAAGTCCGCTTTCGAGAAGGATGAGGCGGAAGGTCGTGTTC
GTGAAGAAGAGAGATTTCGCTGGATGCGTGCCTTGCTCAGCGAGTGCCGC
ACTATTGTTGGCGAGGAAGATCGAAAAATTCGAGGTCAGGCAAGACGCTT
GCAGGAAAGTTATGGATGCGGTGGCGATTTGTCCGGTCTCATGATCCGGA
ACTTCGACACATTGAAAAAGCTTGGAATGGTCCGTCAGAACGCAAGAATT
CGTGTTTTAAGCGAGATGGATGATAGCGAACTCACGTCTGAGGGGGGCGT
CACTTTGGCTCAAAGCTCTCGGGGTCCTTCAGCTGACGCTAATGTCGAAA
GCATCGCAAACCCCGTAGAAAAGAAAACCAGCGATGTGCCTAATGAAATT
CAACCCGCTAGCGCACAAGATGAAAAGCCGATAAAAGCTAAAGGTTCTGA
AAGCGACACCGAAAAAGAAACTGGGGAGGAAGACGATGACGATGACGATG
ACGACATGGACGGTTTTGGGCTCATTAAGGTCATTCCAGCTGGAAACAGT
CCTATAAAGGACGGAGAAGAAGAATCAGCTGCCCCCGTTGAGAACGGTGC
AGCCGTTCATTCGAAGGCGTCTTCTTCACAAGGTGATCCTACTATGATCA
ATAAGGACTCACCACTTCAACAAAACGAGCTCAACCCAGCAGAAAGAGGT
AAGGGAGACAAGCATGCATTAGATGATGATTCTGACAAAAAACAACTTCC
TGCTCCCCAAGAAAAAGATGTCGACTTGAGATCCCAGTTTGACAAACATA
ACGAGACAGGGGCCACGCCATCGAAAGCAGAGAACAACTTGGAAGTTGAG
AGAAGTCAAATGAATTTTGGGGAGAAGAAAAGCAGAGCTGGTCAAGTTTC
TGGTTCAAAATTGACAGCAAATGGAAAGGAAGAAGAGAACAACGTCATGG
ACAAGTTCTACGAGACTGGTGCAGGTCCCGACGGCTTGCTAATGCTTGAT
AGAAAGCAGAGCAAACGTGTGTGTGCATGTTGCGGCGGGTACATAAGCCT
AGTGGATGCCGAATCCCGGTTGTTGTCTCATTATGGCGCGCTCGTCACGG
AGGATATGATGATCGAGATTACGGTCGCTCTCGCAACAACGACGGTGGAC
GATCACGTGGAGATTACCGTAGTTCAAAGCGAGGAAGTCGATATGATGAT
AGGTATCGCGATTCATACTCTGGTAGGTCTCAGCACAGTTCGTACAGGAG
ACAAGGTGGATCCGAATGGAATTCAAATTCCGGCGACGGCTATGATAACA
GAAGAAGAGAAACCAACGTTGTATACAAACGCTTTGAGATTCAGAAAATC
TTCTGTTGATGGTACTCTTGTGGGAATCTGCCGAAATTCTTTAGTATGGA
ACTGTCCGGAACGCATGGCTTTCTCACTTTCCATGGATGTCATGTAA
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