Ggra5207.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5207.t1
Unique NameGgra5207.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:759806..760531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002956471.1
Max annot lvl3041|Chlorophyta
Evalue3.1e-10
EggNOG OGs2CYTB@1|root,2S6A7@2759|Eukaryota,37WN4@33090|Viridiplantae,34I4I@3041|Chlorophyta
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5207Ggra5207Gracilaria gracilis GNS1m malegenetig00000069_pilon 759806..760531 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5207.t1.start1Ggra5207.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 759806..759808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5207.t1.CDS1Ggra5207.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 759806..760531 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5207.t1.exon1Ggra5207.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 759806..760531 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5207.t1.stop1Ggra5207.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 760529..760531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5207.t1Ggra5207.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 759806..760531 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5207.t1 ID=Ggra5207.t1|Name=Ggra5207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=242bp
MAPRSSPFFSAELARSAAPRIARVTPRATLSERFPVPDLFSFPSVAFTQG
TLSSDLRPELVGACLWGVGLYLGFSQRVRWGTAVQNALNDTLLNFLPLRV
ADALASVFHTLPFLAAAFTTDALLRYASAGSATWAVASGLSVAMYGGVYE
LGRLNARTKKLTESEEKVYRVFTAFAERTLAQKANGRCHLIDIRAAIRND
SKARTLSTVSDETLRRFIRNKFPKVKRSPNGFYRGLSIRQP*
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spliced messenger RNA

>Ggra5207.t1 ID=Ggra5207.t1|Name=Ggra5207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000069_pilon:759806..760531+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCGTTCGTCCCCGTTCTTCTCCGCTGAGCTCGCGCGGAGTGC
GGCTCCACGCATCGCGCGCGTCACGCCACGGGCCACGCTTTCCGAGCGAT
TCCCCGTGCCGGATTTGTTCTCGTTCCCGTCCGTCGCCTTTACGCAGGGG
ACCTTATCGTCCGACCTGCGTCCCGAGCTGGTCGGCGCGTGTCTGTGGGG
CGTTGGTCTGTACCTCGGCTTCTCGCAGCGCGTTCGCTGGGGTACTGCTG
TGCAGAACGCTCTCAACGACACCCTCCTCAACTTCCTGCCCCTACGCGTT
GCAGACGCGCTGGCGTCTGTGTTTCACACTCTGCCGTTTCTCGCGGCCGC
ATTCACCACTGATGCACTGCTGCGCTACGCTAGTGCCGGCAGTGCGACGT
GGGCAGTCGCCTCTGGTTTATCCGTTGCCATGTACGGCGGCGTTTACGAG
CTCGGCCGTTTGAATGCTCGCACCAAGAAGCTCACAGAATCTGAAGAGAA
GGTCTATCGTGTCTTCACTGCCTTCGCGGAGCGCACACTCGCCCAAAAGG
CAAACGGAAGATGTCATCTAATTGACATCCGAGCAGCCATTCGAAACGAC
TCAAAAGCGCGCACACTGTCAACTGTTTCCGATGAAACCCTGCGCAGGTT
TATTCGCAACAAGTTCCCAAAAGTCAAACGCTCTCCTAATGGCTTTTATC
GCGGATTATCCATCCGTCAGCCCTAG
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protein sequence of Ggra5207.t1

>Ggra5207.t1 ID=Ggra5207.t1|Name=Ggra5207.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=242bp
MAPRSSPFFSAELARSAAPRIARVTPRATLSERFPVPDLFSFPSVAFTQG
TLSSDLRPELVGACLWGVGLYLGFSQRVRWGTAVQNALNDTLLNFLPLRV
ADALASVFHTLPFLAAAFTTDALLRYASAGSATWAVASGLSVAMYGGVYE
LGRLNARTKKLTESEEKVYRVFTAFAERTLAQKANGRCHLIDIRAAIRND
SKARTLSTVSDETLRRFIRNKFPKVKRSPNGFYRGLSIRQP*
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mRNA from alignment at tig00000069_pilon:759806..760531+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5207.t1 ID=Ggra5207.t1|Name=Ggra5207.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000069_pilon:759806..760531+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGCGTTCGTCCCCGTTCTTCTCCGCTGAGCTCGCGCGGAGTGC
GGCTCCACGCATCGCGCGCGTCACGCCACGGGCCACGCTTTCCGAGCGAT
TCCCCGTGCCGGATTTGTTCTCGTTCCCGTCCGTCGCCTTTACGCAGGGG
ACCTTATCGTCCGACCTGCGTCCCGAGCTGGTCGGCGCGTGTCTGTGGGG
CGTTGGTCTGTACCTCGGCTTCTCGCAGCGCGTTCGCTGGGGTACTGCTG
TGCAGAACGCTCTCAACGACACCCTCCTCAACTTCCTGCCCCTACGCGTT
GCAGACGCGCTGGCGTCTGTGTTTCACACTCTGCCGTTTCTCGCGGCCGC
ATTCACCACTGATGCACTGCTGCGCTACGCTAGTGCCGGCAGTGCGACGT
GGGCAGTCGCCTCTGGTTTATCCGTTGCCATGTACGGCGGCGTTTACGAG
CTCGGCCGTTTGAATGCTCGCACCAAGAAGCTCACAGAATCTGAAGAGAA
GGTCTATCGTGTCTTCACTGCCTTCGCGGAGCGCACACTCGCCCAAAAGG
CAAACGGAAGATGTCATCTAATTGACATCCGAGCAGCCATTCGAAACGAC
TCAAAAGCGCGCACACTGTCAACTGTTTCCGATGAAACCCTGCGCAGGTT
TATTCGCAACAAGTTCCCAAAAGTCAAACGCTCTCCTAATGGCTTTTATC
GCGGATTATCCATCCGTCAGCCCTAG
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Coding sequence (CDS) from alignment at tig00000069_pilon:759806..760531+

>Ggra5207.t1 ID=Ggra5207.t1|Name=Ggra5207.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000069_pilon:759806..760531+ (Gracilaria gracilis GNS1m male)
ATGGCGCCGCGTTCGTCCCCGTTCTTCTCCGCTGAGCTCGCGCGGAGTGC
GGCTCCACGCATCGCGCGCGTCACGCCACGGGCCACGCTTTCCGAGCGAT
TCCCCGTGCCGGATTTGTTCTCGTTCCCGTCCGTCGCCTTTACGCAGGGG
ACCTTATCGTCCGACCTGCGTCCCGAGCTGGTCGGCGCGTGTCTGTGGGG
CGTTGGTCTGTACCTCGGCTTCTCGCAGCGCGTTCGCTGGGGTACTGCTG
TGCAGAACGCTCTCAACGACACCCTCCTCAACTTCCTGCCCCTACGCGTT
GCAGACGCGCTGGCGTCTGTGTTTCACACTCTGCCGTTTCTCGCGGCCGC
ATTCACCACTGATGCACTGCTGCGCTACGCTAGTGCCGGCAGTGCGACGT
GGGCAGTCGCCTCTGGTTTATCCGTTGCCATGTACGGCGGCGTTTACGAG
CTCGGCCGTTTGAATGCTCGCACCAAGAAGCTCACAGAATCTGAAGAGAA
GGTCTATCGTGTCTTCACTGCCTTCGCGGAGCGCACACTCGCCCAAAAGG
CAAACGGAAGATGTCATCTAATTGACATCCGAGCAGCCATTCGAAACGAC
TCAAAAGCGCGCACACTGTCAACTGTTTCCGATGAAACCCTGCGCAGGTT
TATTCGCAACAAGTTCCCAAAAGTCAAACGCTCTCCTAATGGCTTTTATC
GCGGATTATCCATCCGTCAGCCCTAG
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