Ggra5204.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5204.t1
Unique NameGgra5204.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length660
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:749082..751231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039855.1
PFAMsDynamin_M,Dynamin_N,GED
Max annot lvl2759|Eukaryota
KEGG koko:K14754,ko:K20291
KEGG Pathwayko05162,ko05164,ko05165,map05162,map05164,map05165
Evalue1.5e-124
EggNOG OGsCOG0699@1|root,KOG0446@2759|Eukaryota
Descriptionmitochondrial fission
COG categoryI
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5204Ggra5204Gracilaria gracilis GNS1m malegenetig00000069_pilon 749082..751231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1Ggra5204.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 749082..751231 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1.stop1Ggra5204.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 749082..749084 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1.CDS1Ggra5204.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 749082..750597 -
Ggra5204.t1.CDS2Ggra5204.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 750708..751078 -
Ggra5204.t1.CDS3Ggra5204.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 751139..751231 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1.exon1Ggra5204.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 749082..750597 -
Ggra5204.t1.exon2Ggra5204.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 750708..751078 -
Ggra5204.t1.exon3Ggra5204.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 751139..751231 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1.intron1Ggra5204.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 750598..750707 -
Ggra5204.t1.intron2Ggra5204.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 751079..751138 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5204.t1.start1Ggra5204.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 751229..751231 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5204.t1 ID=Ggra5204.t1|Name=Ggra5204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp
MELIYGLRACGVEHDIAIPQVAVIGDQSSGKSSVLEAICSVPLPRGAGLT
TRCAIELRLSSTHPEDLALPPDSEPPERDPFWVASISTSLNPKKVPLDGK
SELEDAIAARAASLTDSRHNGGFSKERVIVHIAATASPNLTIIDLPGIIR
TKTFGQDRNAIRQVSELIQGYAAQERTIMLVVVPATQDVATIEALEWAAR
YDRVGRRTIGVITKPDLVDKGAEKEVAAVLMNRRKPLKLGYVMVKNRSQI
EVEENVSVPRARKNEYDFFASHHVFSKMARSYFGVENLVKQVTSVLVARV
HDEVPKMRSEVVQMLEQTTQELQEIGQGAGETPAEANMTLMRIVFEYNSL
LTESSAGRYVDKRLWSPRLRLCTRVRDVYDEFKSKIERKRPPFDGDSKFI
DEVENEIRNSRGRELPGFLNPRIFESRVARYVEDWRESSNQLVGNVRKLV
SEVTVDLLASLAPEFPGLRSKMQEIVTAVLQKLEKSARKELASVFDREIG
QPFTMNEQFLTAVNAKRLERFDAAVVVALSRAGRDPRGNIREKNVSDMLR
AWYQSYYCSSSAERVRADAEDMSTMLGCYWDVSAKRFIDNNVMVIDTAII
RPLAQEIHVPLNELVLKVGTSQQALENLLQEDPIVTSRRKTLRAKKERLM
KAQELLDRF*
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spliced messenger RNA

>Ggra5204.t1 ID=Ggra5204.t1|Name=Ggra5204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1980bp|location=Sequence derived from alignment at tig00000069_pilon:749082..751231- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCATATATGGACTACGTGCCTGTGGAGTGGAGCACGACATAGC
GATTCCTCAAGTAGCTGTCATTGGGGATCAGAGCTCAGGAAAGTCAAGCG
TACTAGAAGCCATTTGTTCCGTTCCTCTTCCGCGTGGCGCAGGACTTACT
ACACGGTGTGCTATCGAATTGCGTCTCTCCAGCACACACCCTGAGGACTT
AGCGTTACCACCTGATTCTGAACCTCCAGAGAGAGATCCATTCTGGGTTG
CGTCAATTTCTACTTCTTTAAACCCGAAGAAGGTCCCATTAGACGGGAAG
AGTGAGCTCGAAGATGCCATTGCGGCTCGTGCAGCGTCACTTACTGATTC
GAGACACAACGGCGGGTTTTCGAAAGAGCGTGTCATTGTCCATATCGCTG
CTACCGCATCTCCAAACCTTACTATCATTGACTTGCCTGGTATCATTCGC
ACAAAGACCTTTGGTCAAGATCGAAATGCCATCAGACAAGTATCTGAGCT
TATACAAGGGTATGCCGCGCAAGAGAGAACGATTATGCTCGTAGTTGTAC
CGGCTACTCAGGATGTTGCTACTATTGAAGCTCTTGAATGGGCAGCTCGG
TATGATCGTGTTGGACGACGAACGATCGGTGTCATAACAAAACCTGACCT
CGTAGACAAAGGCGCAGAGAAGGAAGTCGCCGCAGTGCTCATGAATCGCC
GCAAACCGTTAAAGCTGGGGTATGTGATGGTGAAGAATCGAAGTCAGATT
GAAGTCGAAGAGAACGTCTCTGTTCCACGGGCTCGGAAGAATGAGTATGA
CTTCTTCGCATCTCATCATGTGTTCTCAAAAATGGCACGATCCTATTTCG
GAGTTGAGAATCTTGTGAAGCAAGTAACAAGCGTTCTCGTAGCTCGAGTT
CATGACGAAGTACCCAAAATGCGTTCCGAGGTTGTTCAGATGCTGGAACA
AACCACTCAAGAGCTCCAAGAAATTGGTCAAGGGGCTGGAGAAACGCCGG
CTGAAGCAAATATGACCCTGATGCGAATTGTTTTCGAATATAATAGTCTT
CTCACGGAATCCAGTGCTGGTCGCTATGTAGACAAGCGTCTGTGGTCACC
TCGCCTTCGACTTTGTACTCGAGTACGTGACGTATACGATGAATTCAAGT
CAAAAATTGAACGGAAGCGACCGCCATTTGACGGAGACTCGAAGTTTATC
GATGAAGTTGAGAACGAAATACGAAATTCGCGCGGTAGGGAACTACCCGG
GTTCCTCAATCCCCGTATATTCGAGTCAAGAGTCGCACGTTATGTAGAGG
ATTGGCGAGAATCTTCCAACCAGCTTGTTGGAAATGTGCGAAAACTTGTG
TCTGAAGTGACCGTCGATTTGCTTGCATCTCTGGCCCCAGAGTTTCCAGG
ACTGAGAAGCAAAATGCAGGAGATAGTGACTGCGGTTCTTCAAAAGTTGG
AAAAGAGTGCTCGTAAGGAACTCGCCTCTGTGTTTGACCGTGAGATCGGC
CAGCCGTTCACTATGAATGAGCAGTTCCTCACAGCTGTTAATGCGAAGCG
CTTGGAACGATTCGACGCTGCTGTCGTTGTCGCACTTTCAAGGGCTGGTC
GAGATCCCCGCGGTAACATCCGCGAGAAGAATGTTTCTGACATGCTCCGT
GCTTGGTATCAAAGTTATTACTGCTCAAGCAGTGCTGAACGTGTGAGAGC
GGACGCGGAGGACATGTCAACCATGCTCGGATGCTACTGGGACGTATCTG
CAAAGCGATTTATAGATAATAATGTTATGGTAATTGACACGGCGATTATC
AGGCCCCTTGCACAAGAGATTCATGTACCCCTGAATGAGCTTGTGTTGAA
GGTGGGAACTTCTCAGCAAGCTCTCGAAAATCTGTTGCAAGAGGATCCAA
TAGTGACGTCGAGAAGGAAAACTTTGCGAGCGAAGAAGGAACGCTTGATG
AAGGCTCAAGAACTCCTCGACAGGTTTTAA
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protein sequence of Ggra5204.t1

>Ggra5204.t1 ID=Ggra5204.t1|Name=Ggra5204.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=660bp
MELIYGLRACGVEHDIAIPQVAVIGDQSSGKSSVLEAICSVPLPRGAGLT
TRCAIELRLSSTHPEDLALPPDSEPPERDPFWVASISTSLNPKKVPLDGK
SELEDAIAARAASLTDSRHNGGFSKERVIVHIAATASPNLTIIDLPGIIR
TKTFGQDRNAIRQVSELIQGYAAQERTIMLVVVPATQDVATIEALEWAAR
YDRVGRRTIGVITKPDLVDKGAEKEVAAVLMNRRKPLKLGYVMVKNRSQI
EVEENVSVPRARKNEYDFFASHHVFSKMARSYFGVENLVKQVTSVLVARV
HDEVPKMRSEVVQMLEQTTQELQEIGQGAGETPAEANMTLMRIVFEYNSL
LTESSAGRYVDKRLWSPRLRLCTRVRDVYDEFKSKIERKRPPFDGDSKFI
DEVENEIRNSRGRELPGFLNPRIFESRVARYVEDWRESSNQLVGNVRKLV
SEVTVDLLASLAPEFPGLRSKMQEIVTAVLQKLEKSARKELASVFDREIG
QPFTMNEQFLTAVNAKRLERFDAAVVVALSRAGRDPRGNIREKNVSDMLR
AWYQSYYCSSSAERVRADAEDMSTMLGCYWDVSAKRFIDNNVMVIDTAII
RPLAQEIHVPLNELVLKVGTSQQALENLLQEDPIVTSRRKTLRAKKERLM
KAQELLDRF*
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mRNA from alignment at tig00000069_pilon:749082..751231-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5204.t1 ID=Ggra5204.t1|Name=Ggra5204.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2150bp|location=Sequence derived from alignment at tig00000069_pilon:749082..751231- (Gracilaria gracilis GNS1m male)
ATGGAGCTCATATATGGACTACGTGCCTGTGGAGTGGAGCACGACATAGC
GATTCCTCAAGTAGCTGTCATTGGGGATCAGAGCTCAGGAAAGGTAAGAC
ATATATCCATTTCCTCATGGTGATAGCAGTAGCTGACATTTAACCGGCAA
TAGTCAAGCGTACTAGAAGCCATTTGTTCCGTTCCTCTTCCGCGTGGCGC
AGGACTTACTACACGGTGTGCTATCGAATTGCGTCTCTCCAGCACACACC
CTGAGGACTTAGCGTTACCACCTGATTCTGAACCTCCAGAGAGAGATCCA
TTCTGGGTTGCGTCAATTTCTACTTCTTTAAACCCGAAGAAGGTCCCATT
AGACGGGAAGAGTGAGCTCGAAGATGCCATTGCGGCTCGTGCAGCGTCAC
TTACTGATTCGAGACACAACGGCGGGTTTTCGAAAGAGCGTGTCATTGTC
CATATCGCTGCTACCGCATCTCCAAACCTTACTATCATTGACTTGCCTGG
TATCATTCGCACAAAGACCTTTGGGTACGTCCTGATCTTCAGATTTGACA
TTAATGTTTCTCTCTTCACTCGCTGACAACAACTATTAACAGAGATTTCA
TGCCCTTTATACCAAACCCTTTTGGACGAGACAGTCAAGATCGAAATGCC
ATCAGACAAGTATCTGAGCTTATACAAGGGTATGCCGCGCAAGAGAGAAC
GATTATGCTCGTAGTTGTACCGGCTACTCAGGATGTTGCTACTATTGAAG
CTCTTGAATGGGCAGCTCGGTATGATCGTGTTGGACGACGAACGATCGGT
GTCATAACAAAACCTGACCTCGTAGACAAAGGCGCAGAGAAGGAAGTCGC
CGCAGTGCTCATGAATCGCCGCAAACCGTTAAAGCTGGGGTATGTGATGG
TGAAGAATCGAAGTCAGATTGAAGTCGAAGAGAACGTCTCTGTTCCACGG
GCTCGGAAGAATGAGTATGACTTCTTCGCATCTCATCATGTGTTCTCAAA
AATGGCACGATCCTATTTCGGAGTTGAGAATCTTGTGAAGCAAGTAACAA
GCGTTCTCGTAGCTCGAGTTCATGACGAAGTACCCAAAATGCGTTCCGAG
GTTGTTCAGATGCTGGAACAAACCACTCAAGAGCTCCAAGAAATTGGTCA
AGGGGCTGGAGAAACGCCGGCTGAAGCAAATATGACCCTGATGCGAATTG
TTTTCGAATATAATAGTCTTCTCACGGAATCCAGTGCTGGTCGCTATGTA
GACAAGCGTCTGTGGTCACCTCGCCTTCGACTTTGTACTCGAGTACGTGA
CGTATACGATGAATTCAAGTCAAAAATTGAACGGAAGCGACCGCCATTTG
ACGGAGACTCGAAGTTTATCGATGAAGTTGAGAACGAAATACGAAATTCG
CGCGGTAGGGAACTACCCGGGTTCCTCAATCCCCGTATATTCGAGTCAAG
AGTCGCACGTTATGTAGAGGATTGGCGAGAATCTTCCAACCAGCTTGTTG
GAAATGTGCGAAAACTTGTGTCTGAAGTGACCGTCGATTTGCTTGCATCT
CTGGCCCCAGAGTTTCCAGGACTGAGAAGCAAAATGCAGGAGATAGTGAC
TGCGGTTCTTCAAAAGTTGGAAAAGAGTGCTCGTAAGGAACTCGCCTCTG
TGTTTGACCGTGAGATCGGCCAGCCGTTCACTATGAATGAGCAGTTCCTC
ACAGCTGTTAATGCGAAGCGCTTGGAACGATTCGACGCTGCTGTCGTTGT
CGCACTTTCAAGGGCTGGTCGAGATCCCCGCGGTAACATCCGCGAGAAGA
ATGTTTCTGACATGCTCCGTGCTTGGTATCAAAGTTATTACTGCTCAAGC
AGTGCTGAACGTGTGAGAGCGGACGCGGAGGACATGTCAACCATGCTCGG
ATGCTACTGGGACGTATCTGCAAAGCGATTTATAGATAATAATGTTATGG
TAATTGACACGGCGATTATCAGGCCCCTTGCACAAGAGATTCATGTACCC
CTGAATGAGCTTGTGTTGAAGGTGGGAACTTCTCAGCAAGCTCTCGAAAA
TCTGTTGCAAGAGGATCCAATAGTGACGTCGAGAAGGAAAACTTTGCGAG
CGAAGAAGGAACGCTTGATGAAGGCTCAAGAACTCCTCGACAGGTTTTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:749082..751231-

>Ggra5204.t1 ID=Ggra5204.t1|Name=Ggra5204.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1980bp|location=Sequence derived from alignment at tig00000069_pilon:749082..751231- (Gracilaria gracilis GNS1m male)
ATGGAGCTCATATATGGACTACGTGCCTGTGGAGTGGAGCACGACATAGC
GATTCCTCAAGTAGCTGTCATTGGGGATCAGAGCTCAGGAAAGTCAAGCG
TACTAGAAGCCATTTGTTCCGTTCCTCTTCCGCGTGGCGCAGGACTTACT
ACACGGTGTGCTATCGAATTGCGTCTCTCCAGCACACACCCTGAGGACTT
AGCGTTACCACCTGATTCTGAACCTCCAGAGAGAGATCCATTCTGGGTTG
CGTCAATTTCTACTTCTTTAAACCCGAAGAAGGTCCCATTAGACGGGAAG
AGTGAGCTCGAAGATGCCATTGCGGCTCGTGCAGCGTCACTTACTGATTC
GAGACACAACGGCGGGTTTTCGAAAGAGCGTGTCATTGTCCATATCGCTG
CTACCGCATCTCCAAACCTTACTATCATTGACTTGCCTGGTATCATTCGC
ACAAAGACCTTTGGTCAAGATCGAAATGCCATCAGACAAGTATCTGAGCT
TATACAAGGGTATGCCGCGCAAGAGAGAACGATTATGCTCGTAGTTGTAC
CGGCTACTCAGGATGTTGCTACTATTGAAGCTCTTGAATGGGCAGCTCGG
TATGATCGTGTTGGACGACGAACGATCGGTGTCATAACAAAACCTGACCT
CGTAGACAAAGGCGCAGAGAAGGAAGTCGCCGCAGTGCTCATGAATCGCC
GCAAACCGTTAAAGCTGGGGTATGTGATGGTGAAGAATCGAAGTCAGATT
GAAGTCGAAGAGAACGTCTCTGTTCCACGGGCTCGGAAGAATGAGTATGA
CTTCTTCGCATCTCATCATGTGTTCTCAAAAATGGCACGATCCTATTTCG
GAGTTGAGAATCTTGTGAAGCAAGTAACAAGCGTTCTCGTAGCTCGAGTT
CATGACGAAGTACCCAAAATGCGTTCCGAGGTTGTTCAGATGCTGGAACA
AACCACTCAAGAGCTCCAAGAAATTGGTCAAGGGGCTGGAGAAACGCCGG
CTGAAGCAAATATGACCCTGATGCGAATTGTTTTCGAATATAATAGTCTT
CTCACGGAATCCAGTGCTGGTCGCTATGTAGACAAGCGTCTGTGGTCACC
TCGCCTTCGACTTTGTACTCGAGTACGTGACGTATACGATGAATTCAAGT
CAAAAATTGAACGGAAGCGACCGCCATTTGACGGAGACTCGAAGTTTATC
GATGAAGTTGAGAACGAAATACGAAATTCGCGCGGTAGGGAACTACCCGG
GTTCCTCAATCCCCGTATATTCGAGTCAAGAGTCGCACGTTATGTAGAGG
ATTGGCGAGAATCTTCCAACCAGCTTGTTGGAAATGTGCGAAAACTTGTG
TCTGAAGTGACCGTCGATTTGCTTGCATCTCTGGCCCCAGAGTTTCCAGG
ACTGAGAAGCAAAATGCAGGAGATAGTGACTGCGGTTCTTCAAAAGTTGG
AAAAGAGTGCTCGTAAGGAACTCGCCTCTGTGTTTGACCGTGAGATCGGC
CAGCCGTTCACTATGAATGAGCAGTTCCTCACAGCTGTTAATGCGAAGCG
CTTGGAACGATTCGACGCTGCTGTCGTTGTCGCACTTTCAAGGGCTGGTC
GAGATCCCCGCGGTAACATCCGCGAGAAGAATGTTTCTGACATGCTCCGT
GCTTGGTATCAAAGTTATTACTGCTCAAGCAGTGCTGAACGTGTGAGAGC
GGACGCGGAGGACATGTCAACCATGCTCGGATGCTACTGGGACGTATCTG
CAAAGCGATTTATAGATAATAATGTTATGGTAATTGACACGGCGATTATC
AGGCCCCTTGCACAAGAGATTCATGTACCCCTGAATGAGCTTGTGTTGAA
GGTGGGAACTTCTCAGCAAGCTCTCGAAAATCTGTTGCAAGAGGATCCAA
TAGTGACGTCGAGAAGGAAAACTTTGCGAGCGAAGAAGGAACGCTTGATG
AAGGCTCAAGAACTCCTCGACAGGTTTTAA
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