Ggra5201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5201.t1
Unique NameGgra5201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length688
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:742333..744690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_4459
Preferred namelepA
PFAMsEFG_C,GTP_EFTU,GTP_EFTU_D2,LepA_C
Max annot lvl1117|Cyanobacteria
KEGG koko:K03596
KEGG Pathwayko05134,map05134
Evalue2e-307
EggNOG OGsCOG0481@1|root,COG0481@2|Bacteria,1G1AS@1117|Cyanobacteria,1H71B@1150|Oscillatoriales
DescriptionPFAM Elongation factor Tu domain 2
COG categoryM
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5201Ggra5201Gracilaria gracilis GNS1m malegenetig00000069_pilon 742333..744690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1Ggra5201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 742333..744690 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1.stop1Ggra5201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 742333..742335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1.CDS1Ggra5201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 742333..742474 -
Ggra5201.t1.CDS2Ggra5201.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 742570..742582 -
Ggra5201.t1.CDS3Ggra5201.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000069_pilon 742685..743078 -
Ggra5201.t1.CDS4Ggra5201.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000069_pilon 743176..744690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1.exon1Ggra5201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 742333..742474 -
Ggra5201.t1.exon2Ggra5201.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 742570..742582 -
Ggra5201.t1.exon3Ggra5201.t1.exon3Gracilaria gracilis GNS1m maleexontig00000069_pilon 742685..743078 -
Ggra5201.t1.exon4Ggra5201.t1.exon4Gracilaria gracilis GNS1m maleexontig00000069_pilon 743176..744690 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1.intron1Ggra5201.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 742475..742569 -
Ggra5201.t1.intron2Ggra5201.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000069_pilon 742583..742684 -
Ggra5201.t1.intron3Ggra5201.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000069_pilon 743079..743175 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5201.t1.start1Ggra5201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 744688..744690 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5201.t1 ID=Ggra5201.t1|Name=Ggra5201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=688bp
MVPNYVSFVAPGANAQCLTASWTWASTSSSFICSNKTSTSRHTLGSGRRK
ASLSNQAYPSTVAVLETSKNEKKEATPELNNQYINVPTERIRNISIIAHI
DHGKSTLADRLLEITGTVSARDMKEQFMDSNEIERDRGITIKLNAARMNY
MNPEDGQNYVIHLIDTPGHVDFTFEVSRSLEACEGALLVVDASQGVEAQT
LANVYLALDANLELIPVLNKIDLPGAEPERVQREIEEVVGLDVSNAIHAS
AKSGIGIDDILSGIIKYIPPPPDNSASPLRALIFDSYYDPYRGVVVYFRI
VDGQMRKGEKIKFMVTGKEFVAEEIGVMTPNQQPVSVLSSGEIGYLIAGV
KTVEDARVGDTITTSVKSAEEPLPGYQEAKPMLFAGLFPVDSDQYNQLKD
SLEKLKLNDAALQFEVENSAAMGFGFRCGFLGLLHMDVVQERLEREYGLD
IITTAPSVVYAVKPTKGEEFFIDNPSDLPDATRREYIAEPYCRLEIITPE
EYVGTLMELAQNRRGEYRDMRYLVQGRTTLVYDLPLAELVNDFFDHLKSR
TKGYASMEYTFTGYRRNDLVRLDVAINGEDVDALSCIVHDDKAYTVGKAL
VTKLKEIVPRAQFKIPIQAKIGAKVVASQQLSALRKDVTAKCYGGDISRK
KKLIQKQAAGKKRMKSVGKVSVPQEAFKAMLSLNDGS*
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spliced messenger RNA

>Ggra5201.t1 ID=Ggra5201.t1|Name=Ggra5201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2064bp|location=Sequence derived from alignment at tig00000069_pilon:742333..744690- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCCTAATTATGTATCTTTCGTCGCTCCTGGCGCCAATGCACAGTG
TTTAACTGCTTCATGGACATGGGCTTCAACTTCATCGAGCTTCATTTGCT
CCAACAAGACATCTACTTCAAGACACACGCTCGGCTCTGGAAGGCGAAAA
GCTAGTTTAAGCAATCAGGCATATCCTTCCACGGTAGCGGTTTTGGAGAC
TTCAAAGAATGAGAAAAAGGAGGCCACTCCCGAGCTGAACAACCAATACA
TAAATGTTCCTACAGAAAGAATTCGTAACATTAGTATTATTGCTCACATA
GACCATGGCAAAAGCACACTGGCGGATCGACTGCTTGAAATAACGGGAAC
TGTTTCTGCACGCGACATGAAGGAGCAGTTCATGGATAGTAACGAAATTG
AACGCGACCGCGGCATTACAATCAAACTCAATGCGGCACGAATGAACTAC
ATGAATCCAGAAGATGGCCAAAACTATGTCATTCACTTGATTGATACTCC
CGGACACGTCGATTTCACTTTCGAAGTCTCGCGTTCTTTAGAAGCTTGTG
AAGGAGCTCTGCTTGTCGTTGATGCCTCTCAAGGTGTTGAAGCTCAGACG
TTGGCCAATGTCTATCTTGCGCTTGATGCAAACCTTGAACTCATACCCGT
CTTGAACAAGATCGATTTGCCCGGAGCTGAACCGGAGCGGGTTCAGCGTG
AAATTGAAGAAGTTGTCGGTCTAGACGTTTCAAATGCTATTCATGCGTCT
GCCAAGTCAGGTATTGGCATCGATGATATTCTAAGTGGTATCATTAAGTA
CATACCTCCCCCTCCAGATAATTCAGCCTCGCCATTACGAGCTCTTATTT
TTGATTCCTACTACGATCCATATCGAGGTGTCGTTGTTTATTTCAGGATT
GTGGACGGACAGATGCGAAAGGGCGAGAAGATTAAGTTCATGGTCACTGG
GAAAGAGTTTGTTGCTGAAGAAATTGGTGTCATGACCCCCAACCAGCAAC
CCGTAAGTGTTCTTAGTTCCGGGGAAATTGGCTACCTTATTGCTGGAGTG
AAAACTGTAGAGGATGCCAGGGTGGGTGATACCATAACGACTTCGGTCAA
GAGCGCAGAAGAGCCGCTCCCCGGATACCAAGAAGCGAAGCCCATGCTTT
TCGCGGGTCTGTTTCCTGTCGACAGCGATCAATACAACCAACTCAAAGAC
TCGCTTGAAAAGCTCAAACTCAATGATGCTGCTTTACAGTTTGAAGTTGA
AAACTCTGCTGCAATGGGTTTCGGTTTTCGTTGTGGATTCTTAGGATTGC
TTCACATGGATGTGGTCCAAGAACGGCTTGAGCGAGAATACGGATTGGAC
ATTATAACGACTGCCCCATCCGTTGTGTACGCTGTCAAACCGACGAAAGG
TGAAGAATTCTTTATAGATAATCCGTCGGACTTACCCGATGCCACAAGAA
GGGAATACATTGCGGAACCTTACTGCAGATTGGAAATCATAACACCTGAA
GAATACGTGGGAACGTTAATGGAGCTGGCCCAAAACAGAAGAGGAGAATA
CCGAGACATGAGGTATCTTGTACAAGGGAGAACAACTTTGGTTTACGACC
TTCCCTTGGCTGAGCTCGTGAACGACTTCTTTGATCATTTGAAATCAAGG
ACCAAAGGGTATGCCTCAATGGAATACACGTTTACGGGTTATCGTCGAAA
CGATTTGGTTCGCCTCGATGTAGCCATAAACGGTGAGGATGTCGACGCTT
TGTCATGCATAGTTCACGATGATAAAGCATACACGGTAGGGAAAGCACTC
GTCACGAAGTTGAAAGAGATAGTCCCAAGAGCACAGTTCAAGATTCCTAT
TCAAGCTAAAATCGGTGCCAAGGTTGTCGCCAGCCAGCAATTATCGGCTT
TGAGGAAGGATGTCACGGCCAAATGCTATGGAGGTGACATTTCGAGAAAA
AAGAAACTAATTCAAAAACAAGCAGCGGGTAAGAAGAGAATGAAATCTGT
CGGAAAAGTTAGTGTTCCACAGGAAGCATTTAAGGCCATGTTGTCTTTAA
ACGACGGATCGTAA
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protein sequence of Ggra5201.t1

>Ggra5201.t1 ID=Ggra5201.t1|Name=Ggra5201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=688bp
MVPNYVSFVAPGANAQCLTASWTWASTSSSFICSNKTSTSRHTLGSGRRK
ASLSNQAYPSTVAVLETSKNEKKEATPELNNQYINVPTERIRNISIIAHI
DHGKSTLADRLLEITGTVSARDMKEQFMDSNEIERDRGITIKLNAARMNY
MNPEDGQNYVIHLIDTPGHVDFTFEVSRSLEACEGALLVVDASQGVEAQT
LANVYLALDANLELIPVLNKIDLPGAEPERVQREIEEVVGLDVSNAIHAS
AKSGIGIDDILSGIIKYIPPPPDNSASPLRALIFDSYYDPYRGVVVYFRI
VDGQMRKGEKIKFMVTGKEFVAEEIGVMTPNQQPVSVLSSGEIGYLIAGV
KTVEDARVGDTITTSVKSAEEPLPGYQEAKPMLFAGLFPVDSDQYNQLKD
SLEKLKLNDAALQFEVENSAAMGFGFRCGFLGLLHMDVVQERLEREYGLD
IITTAPSVVYAVKPTKGEEFFIDNPSDLPDATRREYIAEPYCRLEIITPE
EYVGTLMELAQNRRGEYRDMRYLVQGRTTLVYDLPLAELVNDFFDHLKSR
TKGYASMEYTFTGYRRNDLVRLDVAINGEDVDALSCIVHDDKAYTVGKAL
VTKLKEIVPRAQFKIPIQAKIGAKVVASQQLSALRKDVTAKCYGGDISRK
KKLIQKQAAGKKRMKSVGKVSVPQEAFKAMLSLNDGS*
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mRNA from alignment at tig00000069_pilon:742333..744690-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5201.t1 ID=Ggra5201.t1|Name=Ggra5201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000069_pilon:742333..744690- (Gracilaria gracilis GNS1m male)
ATGGTGCCTAATTATGTATCTTTCGTCGCTCCTGGCGCCAATGCACAGTG
TTTAACTGCTTCATGGACATGGGCTTCAACTTCATCGAGCTTCATTTGCT
CCAACAAGACATCTACTTCAAGACACACGCTCGGCTCTGGAAGGCGAAAA
GCTAGTTTAAGCAATCAGGCATATCCTTCCACGGTAGCGGTTTTGGAGAC
TTCAAAGAATGAGAAAAAGGAGGCCACTCCCGAGCTGAACAACCAATACA
TAAATGTTCCTACAGAAAGAATTCGTAACATTAGTATTATTGCTCACATA
GACCATGGCAAAAGCACACTGGCGGATCGACTGCTTGAAATAACGGGAAC
TGTTTCTGCACGCGACATGAAGGAGCAGTTCATGGATAGTAACGAAATTG
AACGCGACCGCGGCATTACAATCAAACTCAATGCGGCACGAATGAACTAC
ATGAATCCAGAAGATGGCCAAAACTATGTCATTCACTTGATTGATACTCC
CGGACACGTCGATTTCACTTTCGAAGTCTCGCGTTCTTTAGAAGCTTGTG
AAGGAGCTCTGCTTGTCGTTGATGCCTCTCAAGGTGTTGAAGCTCAGACG
TTGGCCAATGTCTATCTTGCGCTTGATGCAAACCTTGAACTCATACCCGT
CTTGAACAAGATCGATTTGCCCGGAGCTGAACCGGAGCGGGTTCAGCGTG
AAATTGAAGAAGTTGTCGGTCTAGACGTTTCAAATGCTATTCATGCGTCT
GCCAAGTCAGGTATTGGCATCGATGATATTCTAAGTGGTATCATTAAGTA
CATACCTCCCCCTCCAGATAATTCAGCCTCGCCATTACGAGCTCTTATTT
TTGATTCCTACTACGATCCATATCGAGGTGTCGTTGTTTATTTCAGGATT
GTGGACGGACAGATGCGAAAGGGCGAGAAGATTAAGTTCATGGTCACTGG
GAAAGAGTTTGTTGCTGAAGAAATTGGTGTCATGACCCCCAACCAGCAAC
CCGTAAGTGTTCTTAGTTCCGGGGAAATTGGCTACCTTATTGCTGGAGTG
AAAACTGTAGAGGATGCCAGGGTGGGTGATACCATAACGACTTCGGTCAA
GAGCGCAGAAGAGCCGCTCCCCGGATACCAAGAAGCGAAGCCCATGCTTT
TCGCGGGTCTGTTTCCTGTCGACAGCGATCAATACAACCAACTCAAAGAC
TCGCTTGAAAAGCTCAAACTCAATGATGCTGCTTTACAGTTTGAAGTTGA
AAACTCTGCTGCAATGGGTTTCGGTTTTCGTTGTGGATTCTTAGGATTGC
TTCACATGGATGTGGTCCAAGAACGGCTTGAGCGAGAATACGGATTGGAC
ATTATAACGACTGCCCCATCCGTTGTGTACGCTGTCAAACCGACGAAAGG
TGAAGAATTCTTTATAGATAATCCGTCGGACTTACCCGATGCCACAAGAA
GGGAATACATTGCGGAACCTTACTGCAGATTGGAAATCATAACACCTGAA
GAATACGTGGGAACGGTAAGTATGAGCCATATGAATTACATTGCATACGG
AAAAAGAGACCAATGGTACTGCGTTCTAACCACTACCAAAATGTCTTATG
TTCTGCGAATAGTTAATGGAGCTGGCCCAAAACAGAAGAGGAGAATACCG
AGACATGAGGTATCTTGTACAAGGGAGAACAACTTTGGTTTACGACCTTC
CCTTGGCTGAGCTCGTGAACGACTTCTTTGATCATTTGAAATCAAGGACC
AAAGGGTATGCCTCAATGGAATACACGTTTACGGGTTATCGTCGAAACGA
TTTGGTTCGCCTCGATGTAGCCATAAACGGTGAGGATGTCGACGCTTTGT
CATGCATAGTTCACGATGATAAAGCATACACGGTAGGGAAAGCACTCGTC
ACGAAGTTGAAAGAGATAGTCCCAAGAGCACAGTTCAAGATTCCTATTCA
AGCTAAAATCGGTGCCAAGGTTGTCGCCAGCCAGCAATTATCGGCTTTGA
GGAAGGGTAAGTATAATTGGGTTCGACCCTTCTCTTTGGAATTCTCTCAA
ATCTTTGCGATGGTCTACTAACGTGCTCTATCGTTTATCATGAATCCTTG
CGTTACAGATGTCACGGCCAAGTACGTTAGCCCAGATTCTTATTCAATAT
TTGACATGTACCGAATACTGTTCTTGCTGACATCGAAACTCTATTGCTCC
CCTTCCTATTCAACAGATGCTATGGAGGTGACATTTCGAGAAAAAAGAAA
CTAATTCAAAAACAAGCAGCGGGTAAGAAGAGAATGAAATCTGTCGGAAA
AGTTAGTGTTCCACAGGAAGCATTTAAGGCCATGTTGTCTTTAAACGACG
GATCGTAA
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Coding sequence (CDS) from alignment at tig00000069_pilon:742333..744690-

>Ggra5201.t1 ID=Ggra5201.t1|Name=Ggra5201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2064bp|location=Sequence derived from alignment at tig00000069_pilon:742333..744690- (Gracilaria gracilis GNS1m male)
ATGGTGCCTAATTATGTATCTTTCGTCGCTCCTGGCGCCAATGCACAGTG
TTTAACTGCTTCATGGACATGGGCTTCAACTTCATCGAGCTTCATTTGCT
CCAACAAGACATCTACTTCAAGACACACGCTCGGCTCTGGAAGGCGAAAA
GCTAGTTTAAGCAATCAGGCATATCCTTCCACGGTAGCGGTTTTGGAGAC
TTCAAAGAATGAGAAAAAGGAGGCCACTCCCGAGCTGAACAACCAATACA
TAAATGTTCCTACAGAAAGAATTCGTAACATTAGTATTATTGCTCACATA
GACCATGGCAAAAGCACACTGGCGGATCGACTGCTTGAAATAACGGGAAC
TGTTTCTGCACGCGACATGAAGGAGCAGTTCATGGATAGTAACGAAATTG
AACGCGACCGCGGCATTACAATCAAACTCAATGCGGCACGAATGAACTAC
ATGAATCCAGAAGATGGCCAAAACTATGTCATTCACTTGATTGATACTCC
CGGACACGTCGATTTCACTTTCGAAGTCTCGCGTTCTTTAGAAGCTTGTG
AAGGAGCTCTGCTTGTCGTTGATGCCTCTCAAGGTGTTGAAGCTCAGACG
TTGGCCAATGTCTATCTTGCGCTTGATGCAAACCTTGAACTCATACCCGT
CTTGAACAAGATCGATTTGCCCGGAGCTGAACCGGAGCGGGTTCAGCGTG
AAATTGAAGAAGTTGTCGGTCTAGACGTTTCAAATGCTATTCATGCGTCT
GCCAAGTCAGGTATTGGCATCGATGATATTCTAAGTGGTATCATTAAGTA
CATACCTCCCCCTCCAGATAATTCAGCCTCGCCATTACGAGCTCTTATTT
TTGATTCCTACTACGATCCATATCGAGGTGTCGTTGTTTATTTCAGGATT
GTGGACGGACAGATGCGAAAGGGCGAGAAGATTAAGTTCATGGTCACTGG
GAAAGAGTTTGTTGCTGAAGAAATTGGTGTCATGACCCCCAACCAGCAAC
CCGTAAGTGTTCTTAGTTCCGGGGAAATTGGCTACCTTATTGCTGGAGTG
AAAACTGTAGAGGATGCCAGGGTGGGTGATACCATAACGACTTCGGTCAA
GAGCGCAGAAGAGCCGCTCCCCGGATACCAAGAAGCGAAGCCCATGCTTT
TCGCGGGTCTGTTTCCTGTCGACAGCGATCAATACAACCAACTCAAAGAC
TCGCTTGAAAAGCTCAAACTCAATGATGCTGCTTTACAGTTTGAAGTTGA
AAACTCTGCTGCAATGGGTTTCGGTTTTCGTTGTGGATTCTTAGGATTGC
TTCACATGGATGTGGTCCAAGAACGGCTTGAGCGAGAATACGGATTGGAC
ATTATAACGACTGCCCCATCCGTTGTGTACGCTGTCAAACCGACGAAAGG
TGAAGAATTCTTTATAGATAATCCGTCGGACTTACCCGATGCCACAAGAA
GGGAATACATTGCGGAACCTTACTGCAGATTGGAAATCATAACACCTGAA
GAATACGTGGGAACGTTAATGGAGCTGGCCCAAAACAGAAGAGGAGAATA
CCGAGACATGAGGTATCTTGTACAAGGGAGAACAACTTTGGTTTACGACC
TTCCCTTGGCTGAGCTCGTGAACGACTTCTTTGATCATTTGAAATCAAGG
ACCAAAGGGTATGCCTCAATGGAATACACGTTTACGGGTTATCGTCGAAA
CGATTTGGTTCGCCTCGATGTAGCCATAAACGGTGAGGATGTCGACGCTT
TGTCATGCATAGTTCACGATGATAAAGCATACACGGTAGGGAAAGCACTC
GTCACGAAGTTGAAAGAGATAGTCCCAAGAGCACAGTTCAAGATTCCTAT
TCAAGCTAAAATCGGTGCCAAGGTTGTCGCCAGCCAGCAATTATCGGCTT
TGAGGAAGGATGTCACGGCCAAATGCTATGGAGGTGACATTTCGAGAAAA
AAGAAACTAATTCAAAAACAAGCAGCGGGTAAGAAGAGAATGAAATCTGT
CGGAAAAGTTAGTGTTCCACAGGAAGCATTTAAGGCCATGTTGTCTTTAA
ACGACGGATCGTAA
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