Ggra5196.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5196.t1
Unique Name	Ggra5196.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:732459..734576 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704687.1
Preferred name	TFIP11
PFAMs	G-patch,GCFC,TIP_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13103,ko:K17569
GOs	GO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
Evalue	5.07e-14
EggNOG OGs	KOG2184@1\|root,KOG2184@2759\|Eukaryota
Description	spliceosomal complex disassembly
COG category	A
BRITE	ko00000,ko01009,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5196	Ggra5196	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 732459..734576 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5196.t1.start1	Ggra5196.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 732459..732461 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5196.t1.CDS1	Ggra5196.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 732459..734576 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5196.t1.exon1	Ggra5196.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 732459..734576 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5196.t1.stop1	Ggra5196.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 734574..734576 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5196.t1	Ggra5196.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 732459..734576 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:732459..734576+
coding sequence from alignment at tig00000069_pilon:732459..734576+

mRNA sequence

>Ggra5196.t1 ID=Ggra5196.t1|Name=Ggra5196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=706bp
MDESSSSSASSPPQRKGLGFSHLRPSSPSASTSSANSSSSSDGEVPGLST
SFGGRRSRTRKRRRSPSPGSQGHSRAWEAHTRGIGSRILAKQGFTGRLGR
REDGIAEPLQPVIRRGKVGLGADKSKEENRKRRHTLNTIDDLDAEIEAAK
KQIQFKQKGVLAENETTRAGMSRTMKERNSTPVSVEVWNEIGEKLNRARR
TVTVVPPQLLYDLNRLRDLATMQLSAAKRGKQQEEFILQNTVSEKEKSQG
ELEKVKADLDQLVALENVLNGLQNANDMEYEATLKELSDTMTRLSDRFFI
KKQSISLALSELVGDIVKTKLYGCLKSSQKRGKADVKAARFVGTVLQTTR
SILSHDEYSKLCAISVLGPLRRVLSRPDWDVVRGACIADILVIMRPMISE
ALVQVFAEDLLLPKLVAHIKSTRIGDKQIPSHVWIHPWLPVTGRKALVEV
LHHVRISLAASLEAWNLSSPRLHRKELIENTKKWSTILSRKKLQLTLSRH
VTPKLAAGLLQVDGSTDKAPMVFDLLSEWASVCSSRLLATELAGSFMKGP
GCALQRTAFKDWEAAKHMYRRWTTCLPERLRYHFRPVLAALLFILHAAAT
ANKDAKARLFHADIAPLLKNRFQRVEQKKIKRDRPIVPAKKARLVDVISM
VAEKEGLVLIALPDERGHRVFKLGRIRVTTDVRRGIFLVNEEVVSVDEMV
KMAKD*

spliced messenger RNA

>Ggra5196.t1 ID=Ggra5196.t1|Name=Ggra5196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00000069_pilon:732459..734576+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAATCATCATCTTCATCGGCCTCCTCCCCTCCTCAGAGAAAAGG
CCTCGGTTTCAGCCATCTTCGTCCGTCGAGTCCGTCAGCATCCACATCTT
CAGCAAATTCTTCTTCTTCTTCGGATGGTGAGGTGCCGGGTTTATCTACT
TCATTTGGTGGGCGTCGATCACGTACTAGGAAGCGTCGTCGAAGTCCATC
ACCTGGATCCCAAGGGCATTCCAGAGCATGGGAGGCGCATACGCGCGGTA
TTGGGTCAAGAATTCTTGCGAAACAAGGATTCACGGGCAGGCTGGGGAGA
CGCGAAGATGGAATTGCAGAACCTCTACAGCCAGTGATCAGAAGAGGGAA
AGTAGGACTTGGAGCAGATAAAAGCAAAGAAGAAAACCGTAAGAGGCGCC
ACACATTGAACACCATTGACGATCTTGACGCCGAGATAGAGGCTGCGAAG
AAGCAGATTCAATTTAAACAGAAAGGAGTCTTAGCAGAAAATGAGACTAC
CAGAGCAGGTATGTCCCGTACCATGAAAGAACGCAATTCGACACCTGTTT
CCGTCGAAGTGTGGAACGAAATCGGTGAGAAGCTGAATCGGGCGCGGCGC
ACAGTGACCGTCGTACCTCCACAACTGCTGTATGATCTGAATCGACTTCG
GGATTTGGCCACGATGCAATTATCTGCAGCAAAGCGTGGAAAGCAGCAAG
AGGAGTTCATATTGCAAAACACAGTATCTGAGAAGGAAAAGTCGCAAGGT
GAATTAGAAAAGGTGAAAGCAGATTTGGATCAACTTGTTGCTCTGGAGAA
TGTACTTAATGGTCTCCAAAATGCGAACGATATGGAATATGAAGCTACTT
TGAAAGAATTGTCAGATACGATGACCCGCCTTAGTGATAGGTTTTTTATC
AAGAAGCAAAGTATATCCTTGGCATTATCAGAGTTGGTTGGCGACATTGT
GAAAACTAAGCTCTATGGCTGTCTTAAAAGCTCGCAAAAACGTGGTAAAG
CCGATGTCAAGGCAGCAAGGTTTGTCGGTACCGTACTTCAGACAACCAGA
TCAATACTATCGCACGATGAGTATTCTAAACTTTGCGCTATATCAGTTTT
GGGACCACTAAGGAGGGTACTATCGCGTCCAGACTGGGATGTCGTGCGAG
GCGCATGTATTGCGGACATCCTGGTCATCATGCGCCCAATGATATCAGAA
GCATTAGTGCAAGTGTTTGCAGAAGACCTTCTCCTTCCAAAGCTTGTTGC
ACATATCAAGAGCACTCGCATAGGAGACAAACAGATACCATCTCATGTAT
GGATCCACCCATGGTTACCTGTAACCGGTCGTAAGGCGTTGGTTGAAGTG
CTCCACCACGTGCGAATAAGCTTAGCCGCTTCACTGGAAGCATGGAATTT
ATCATCCCCGAGGCTGCACCGCAAGGAGCTCATTGAAAACACGAAGAAGT
GGAGCACAATCCTATCGAGAAAGAAACTGCAACTCACGCTCTCTCGCCAT
GTCACGCCAAAATTGGCAGCTGGTCTCCTGCAGGTTGATGGAAGCACTGA
TAAAGCACCAATGGTTTTCGATCTACTCTCAGAATGGGCTTCTGTTTGCT
CCAGTAGACTTCTTGCCACAGAGTTGGCCGGTTCATTCATGAAAGGGCCT
GGATGTGCCCTTCAGCGTACGGCCTTCAAGGACTGGGAGGCCGCGAAGCA
CATGTACCGAAGATGGACCACTTGTTTGCCAGAGCGTCTAAGATATCATT
TCCGTCCAGTCTTAGCCGCACTTCTTTTTATTCTACACGCTGCTGCAACG
GCGAACAAGGATGCGAAAGCAAGGCTCTTCCATGCAGATATCGCCCCTCT
CCTCAAGAATCGTTTCCAGAGAGTTGAGCAAAAGAAAATCAAGAGAGATC
GACCAATTGTACCTGCTAAGAAGGCGAGATTGGTGGATGTCATCAGTATG
GTAGCGGAGAAGGAAGGATTAGTATTAATTGCTTTGCCAGATGAAAGAGG
TCATAGGGTGTTTAAACTCGGTCGAATTCGGGTCACCACTGATGTTAGAA
GAGGAATATTTCTCGTCAACGAAGAGGTTGTCAGCGTAGATGAAATGGTA
AAGATGGCAAAAGACTGA

protein sequence of Ggra5196.t1

>Ggra5196.t1 ID=Ggra5196.t1|Name=Ggra5196.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=706bp
MDESSSSSASSPPQRKGLGFSHLRPSSPSASTSSANSSSSSDGEVPGLST
SFGGRRSRTRKRRRSPSPGSQGHSRAWEAHTRGIGSRILAKQGFTGRLGR
REDGIAEPLQPVIRRGKVGLGADKSKEENRKRRHTLNTIDDLDAEIEAAK
KQIQFKQKGVLAENETTRAGMSRTMKERNSTPVSVEVWNEIGEKLNRARR
TVTVVPPQLLYDLNRLRDLATMQLSAAKRGKQQEEFILQNTVSEKEKSQG
ELEKVKADLDQLVALENVLNGLQNANDMEYEATLKELSDTMTRLSDRFFI
KKQSISLALSELVGDIVKTKLYGCLKSSQKRGKADVKAARFVGTVLQTTR
SILSHDEYSKLCAISVLGPLRRVLSRPDWDVVRGACIADILVIMRPMISE
ALVQVFAEDLLLPKLVAHIKSTRIGDKQIPSHVWIHPWLPVTGRKALVEV
LHHVRISLAASLEAWNLSSPRLHRKELIENTKKWSTILSRKKLQLTLSRH
VTPKLAAGLLQVDGSTDKAPMVFDLLSEWASVCSSRLLATELAGSFMKGP
GCALQRTAFKDWEAAKHMYRRWTTCLPERLRYHFRPVLAALLFILHAAAT
ANKDAKARLFHADIAPLLKNRFQRVEQKKIKRDRPIVPAKKARLVDVISM
VAEKEGLVLIALPDERGHRVFKLGRIRVTTDVRRGIFLVNEEVVSVDEMV
KMAKD*

mRNA from alignment at tig00000069_pilon:732459..734576+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5196.t1 ID=Ggra5196.t1|Name=Ggra5196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2118bp|location=Sequence derived from alignment at tig00000069_pilon:732459..734576+ (Gracilaria gracilis GNS1m male)
ATGGACGAATCATCATCTTCATCGGCCTCCTCCCCTCCTCAGAGAAAAGG
CCTCGGTTTCAGCCATCTTCGTCCGTCGAGTCCGTCAGCATCCACATCTT
CAGCAAATTCTTCTTCTTCTTCGGATGGTGAGGTGCCGGGTTTATCTACT
TCATTTGGTGGGCGTCGATCACGTACTAGGAAGCGTCGTCGAAGTCCATC
ACCTGGATCCCAAGGGCATTCCAGAGCATGGGAGGCGCATACGCGCGGTA
TTGGGTCAAGAATTCTTGCGAAACAAGGATTCACGGGCAGGCTGGGGAGA
CGCGAAGATGGAATTGCAGAACCTCTACAGCCAGTGATCAGAAGAGGGAA
AGTAGGACTTGGAGCAGATAAAAGCAAAGAAGAAAACCGTAAGAGGCGCC
ACACATTGAACACCATTGACGATCTTGACGCCGAGATAGAGGCTGCGAAG
AAGCAGATTCAATTTAAACAGAAAGGAGTCTTAGCAGAAAATGAGACTAC
CAGAGCAGGTATGTCCCGTACCATGAAAGAACGCAATTCGACACCTGTTT
CCGTCGAAGTGTGGAACGAAATCGGTGAGAAGCTGAATCGGGCGCGGCGC
ACAGTGACCGTCGTACCTCCACAACTGCTGTATGATCTGAATCGACTTCG
GGATTTGGCCACGATGCAATTATCTGCAGCAAAGCGTGGAAAGCAGCAAG
AGGAGTTCATATTGCAAAACACAGTATCTGAGAAGGAAAAGTCGCAAGGT
GAATTAGAAAAGGTGAAAGCAGATTTGGATCAACTTGTTGCTCTGGAGAA
TGTACTTAATGGTCTCCAAAATGCGAACGATATGGAATATGAAGCTACTT
TGAAAGAATTGTCAGATACGATGACCCGCCTTAGTGATAGGTTTTTTATC
AAGAAGCAAAGTATATCCTTGGCATTATCAGAGTTGGTTGGCGACATTGT
GAAAACTAAGCTCTATGGCTGTCTTAAAAGCTCGCAAAAACGTGGTAAAG
CCGATGTCAAGGCAGCAAGGTTTGTCGGTACCGTACTTCAGACAACCAGA
TCAATACTATCGCACGATGAGTATTCTAAACTTTGCGCTATATCAGTTTT
GGGACCACTAAGGAGGGTACTATCGCGTCCAGACTGGGATGTCGTGCGAG
GCGCATGTATTGCGGACATCCTGGTCATCATGCGCCCAATGATATCAGAA
GCATTAGTGCAAGTGTTTGCAGAAGACCTTCTCCTTCCAAAGCTTGTTGC
ACATATCAAGAGCACTCGCATAGGAGACAAACAGATACCATCTCATGTAT
GGATCCACCCATGGTTACCTGTAACCGGTCGTAAGGCGTTGGTTGAAGTG
CTCCACCACGTGCGAATAAGCTTAGCCGCTTCACTGGAAGCATGGAATTT
ATCATCCCCGAGGCTGCACCGCAAGGAGCTCATTGAAAACACGAAGAAGT
GGAGCACAATCCTATCGAGAAAGAAACTGCAACTCACGCTCTCTCGCCAT
GTCACGCCAAAATTGGCAGCTGGTCTCCTGCAGGTTGATGGAAGCACTGA
TAAAGCACCAATGGTTTTCGATCTACTCTCAGAATGGGCTTCTGTTTGCT
CCAGTAGACTTCTTGCCACAGAGTTGGCCGGTTCATTCATGAAAGGGCCT
GGATGTGCCCTTCAGCGTACGGCCTTCAAGGACTGGGAGGCCGCGAAGCA
CATGTACCGAAGATGGACCACTTGTTTGCCAGAGCGTCTAAGATATCATT
TCCGTCCAGTCTTAGCCGCACTTCTTTTTATTCTACACGCTGCTGCAACG
GCGAACAAGGATGCGAAAGCAAGGCTCTTCCATGCAGATATCGCCCCTCT
CCTCAAGAATCGTTTCCAGAGAGTTGAGCAAAAGAAAATCAAGAGAGATC
GACCAATTGTACCTGCTAAGAAGGCGAGATTGGTGGATGTCATCAGTATG
GTAGCGGAGAAGGAAGGATTAGTATTAATTGCTTTGCCAGATGAAAGAGG
TCATAGGGTGTTTAAACTCGGTCGAATTCGGGTCACCACTGATGTTAGAA
GAGGAATATTTCTCGTCAACGAAGAGGTTGTCAGCGTAGATGAAATGGTA
AAGATGGCAAAAGACTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:732459..734576+

>Ggra5196.t1 ID=Ggra5196.t1|Name=Ggra5196.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2118bp|location=Sequence derived from alignment at tig00000069_pilon:732459..734576+ (Gracilaria gracilis GNS1m male)
ATGGACGAATCATCATCTTCATCGGCCTCCTCCCCTCCTCAGAGAAAAGG
CCTCGGTTTCAGCCATCTTCGTCCGTCGAGTCCGTCAGCATCCACATCTT
CAGCAAATTCTTCTTCTTCTTCGGATGGTGAGGTGCCGGGTTTATCTACT
TCATTTGGTGGGCGTCGATCACGTACTAGGAAGCGTCGTCGAAGTCCATC
ACCTGGATCCCAAGGGCATTCCAGAGCATGGGAGGCGCATACGCGCGGTA
TTGGGTCAAGAATTCTTGCGAAACAAGGATTCACGGGCAGGCTGGGGAGA
CGCGAAGATGGAATTGCAGAACCTCTACAGCCAGTGATCAGAAGAGGGAA
AGTAGGACTTGGAGCAGATAAAAGCAAAGAAGAAAACCGTAAGAGGCGCC
ACACATTGAACACCATTGACGATCTTGACGCCGAGATAGAGGCTGCGAAG
AAGCAGATTCAATTTAAACAGAAAGGAGTCTTAGCAGAAAATGAGACTAC
CAGAGCAGGTATGTCCCGTACCATGAAAGAACGCAATTCGACACCTGTTT
CCGTCGAAGTGTGGAACGAAATCGGTGAGAAGCTGAATCGGGCGCGGCGC
ACAGTGACCGTCGTACCTCCACAACTGCTGTATGATCTGAATCGACTTCG
GGATTTGGCCACGATGCAATTATCTGCAGCAAAGCGTGGAAAGCAGCAAG
AGGAGTTCATATTGCAAAACACAGTATCTGAGAAGGAAAAGTCGCAAGGT
GAATTAGAAAAGGTGAAAGCAGATTTGGATCAACTTGTTGCTCTGGAGAA
TGTACTTAATGGTCTCCAAAATGCGAACGATATGGAATATGAAGCTACTT
TGAAAGAATTGTCAGATACGATGACCCGCCTTAGTGATAGGTTTTTTATC
AAGAAGCAAAGTATATCCTTGGCATTATCAGAGTTGGTTGGCGACATTGT
GAAAACTAAGCTCTATGGCTGTCTTAAAAGCTCGCAAAAACGTGGTAAAG
CCGATGTCAAGGCAGCAAGGTTTGTCGGTACCGTACTTCAGACAACCAGA
TCAATACTATCGCACGATGAGTATTCTAAACTTTGCGCTATATCAGTTTT
GGGACCACTAAGGAGGGTACTATCGCGTCCAGACTGGGATGTCGTGCGAG
GCGCATGTATTGCGGACATCCTGGTCATCATGCGCCCAATGATATCAGAA
GCATTAGTGCAAGTGTTTGCAGAAGACCTTCTCCTTCCAAAGCTTGTTGC
ACATATCAAGAGCACTCGCATAGGAGACAAACAGATACCATCTCATGTAT
GGATCCACCCATGGTTACCTGTAACCGGTCGTAAGGCGTTGGTTGAAGTG
CTCCACCACGTGCGAATAAGCTTAGCCGCTTCACTGGAAGCATGGAATTT
ATCATCCCCGAGGCTGCACCGCAAGGAGCTCATTGAAAACACGAAGAAGT
GGAGCACAATCCTATCGAGAAAGAAACTGCAACTCACGCTCTCTCGCCAT
GTCACGCCAAAATTGGCAGCTGGTCTCCTGCAGGTTGATGGAAGCACTGA
TAAAGCACCAATGGTTTTCGATCTACTCTCAGAATGGGCTTCTGTTTGCT
CCAGTAGACTTCTTGCCACAGAGTTGGCCGGTTCATTCATGAAAGGGCCT
GGATGTGCCCTTCAGCGTACGGCCTTCAAGGACTGGGAGGCCGCGAAGCA
CATGTACCGAAGATGGACCACTTGTTTGCCAGAGCGTCTAAGATATCATT
TCCGTCCAGTCTTAGCCGCACTTCTTTTTATTCTACACGCTGCTGCAACG
GCGAACAAGGATGCGAAAGCAAGGCTCTTCCATGCAGATATCGCCCCTCT
CCTCAAGAATCGTTTCCAGAGAGTTGAGCAAAAGAAAATCAAGAGAGATC
GACCAATTGTACCTGCTAAGAAGGCGAGATTGGTGGATGTCATCAGTATG
GTAGCGGAGAAGGAAGGATTAGTATTAATTGCTTTGCCAGATGAAAGAGG
TCATAGGGTGTTTAAACTCGGTCGAATTCGGGTCACCACTGATGTTAGAA
GAGGAATATTTCTCGTCAACGAAGAGGTTGTCAGCGTAGATGAAATGGTA
AAGATGGCAAAAGACTGA