Ggra5191.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5191.t1
Unique Name	Ggra5191.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	407

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:719255..720475 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5191	Ggra5191	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 719255..720475 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5191.t1.start1	Ggra5191.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 719255..719257 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5191.t1.CDS1	Ggra5191.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 719255..720475 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5191.t1.exon1	Ggra5191.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 719255..720475 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5191.t1.stop1	Ggra5191.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 720473..720475 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5191.t1	Ggra5191.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 719255..720475 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:719255..720475+
coding sequence from alignment at tig00000069_pilon:719255..720475+

mRNA sequence

>Ggra5191.t1 ID=Ggra5191.t1|Name=Ggra5191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MTGFLPESNRSKLAVQSVNPVRVASILFALFVVLMTLRDSGTRVESALGH
SESNNIPLRSDDMKTASSGFENMAKDSMENHKADNANSLPNENAEDVKPV
EARSFRVNDFQEREAPESENDYRPPPCKHSAPGKQNFIMVFMGHSASSAI
LSELSQHSRFFITVPEPIDHPPYEFNSELGLQYANDFFQNSSSTGKVAGF
KMRPWHILHAPDEWKALVKKHNIRLVWQYRINVFKQAVGEYTAKYMNDSS
AIEGIDHTMSEEDRCKIGVGCQFRIDNVTQLHGLMVNFIENNRQIKDAVQ
LLSDSSEEEQCVIPITYEDYLHNRKTAMHKLLAFLDVQFEDHSPYRKKAT
SDNMCYALLNFHNDICDAFFSCSKWRSMLHDPRNSCTCPLSKGLGTSSGL
FCPESS*

spliced messenger RNA

>Ggra5191.t1 ID=Ggra5191.t1|Name=Ggra5191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000069_pilon:719255..720475+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGTTTTTTACCTGAGAGCAATCGTTCCAAACTGGCGGTCCAAAG
TGTGAATCCCGTCCGCGTTGCATCAATACTTTTCGCGCTATTCGTCGTCC
TCATGACATTGCGAGATTCTGGAACGCGTGTGGAAAGCGCCTTAGGCCAT
TCGGAAAGCAACAATATTCCTTTACGCTCGGATGACATGAAAACTGCGTC
CTCTGGGTTCGAAAACATGGCAAAGGATAGCATGGAAAACCATAAAGCGG
ACAACGCCAATTCTCTGCCTAATGAAAACGCAGAGGACGTAAAACCTGTC
GAAGCCAGATCCTTTCGCGTGAACGACTTCCAAGAGAGAGAGGCACCAGA
AAGCGAAAACGATTATCGCCCTCCGCCGTGCAAGCATTCAGCACCAGGGA
AGCAAAACTTTATCATGGTTTTCATGGGACACAGTGCTTCTTCGGCTATT
TTGTCCGAACTAAGCCAACACTCGCGGTTCTTTATCACCGTACCCGAACC
CATCGACCATCCACCTTACGAATTCAACTCCGAGCTAGGCCTCCAATACG
CTAACGACTTCTTTCAGAACTCGTCGTCGACAGGGAAAGTCGCAGGGTTT
AAGATGCGTCCATGGCACATTCTGCATGCACCAGACGAATGGAAGGCTCT
AGTGAAGAAGCACAATATTCGGTTGGTATGGCAATATAGGATCAACGTGT
TCAAACAAGCCGTAGGAGAGTACACGGCTAAGTACATGAACGACAGCTCA
GCAATTGAAGGAATTGATCACACAATGTCCGAAGAGGATCGCTGCAAAAT
TGGTGTGGGATGTCAGTTTCGAATAGATAATGTAACGCAACTCCATGGCC
TCATGGTCAACTTCATCGAAAACAACAGACAAATCAAGGATGCCGTGCAG
CTTCTCTCAGATTCAAGTGAAGAAGAGCAATGTGTGATTCCGATAACATA
CGAAGATTACCTCCATAATAGGAAAACTGCCATGCACAAGCTTTTGGCTT
TTCTAGATGTTCAATTTGAAGACCATTCGCCGTACAGGAAGAAAGCCACC
AGCGACAACATGTGCTACGCACTCCTAAACTTCCACAATGACATATGCGA
CGCCTTTTTCAGTTGTTCTAAATGGAGATCGATGCTGCATGATCCTCGAA
ACTCCTGCACATGCCCTTTATCAAAAGGCTTAGGGACAAGTTCGGGCTTA
TTTTGTCCGGAATCCAGTTGA

protein sequence of Ggra5191.t1

>Ggra5191.t1 ID=Ggra5191.t1|Name=Ggra5191.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MTGFLPESNRSKLAVQSVNPVRVASILFALFVVLMTLRDSGTRVESALGH
SESNNIPLRSDDMKTASSGFENMAKDSMENHKADNANSLPNENAEDVKPV
EARSFRVNDFQEREAPESENDYRPPPCKHSAPGKQNFIMVFMGHSASSAI
LSELSQHSRFFITVPEPIDHPPYEFNSELGLQYANDFFQNSSSTGKVAGF
KMRPWHILHAPDEWKALVKKHNIRLVWQYRINVFKQAVGEYTAKYMNDSS
AIEGIDHTMSEEDRCKIGVGCQFRIDNVTQLHGLMVNFIENNRQIKDAVQ
LLSDSSEEEQCVIPITYEDYLHNRKTAMHKLLAFLDVQFEDHSPYRKKAT
SDNMCYALLNFHNDICDAFFSCSKWRSMLHDPRNSCTCPLSKGLGTSSGL
FCPESS*

mRNA from alignment at tig00000069_pilon:719255..720475+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5191.t1 ID=Ggra5191.t1|Name=Ggra5191.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000069_pilon:719255..720475+ (Gracilaria gracilis GNS1m male)
ATGACGGGTTTTTTACCTGAGAGCAATCGTTCCAAACTGGCGGTCCAAAG
TGTGAATCCCGTCCGCGTTGCATCAATACTTTTCGCGCTATTCGTCGTCC
TCATGACATTGCGAGATTCTGGAACGCGTGTGGAAAGCGCCTTAGGCCAT
TCGGAAAGCAACAATATTCCTTTACGCTCGGATGACATGAAAACTGCGTC
CTCTGGGTTCGAAAACATGGCAAAGGATAGCATGGAAAACCATAAAGCGG
ACAACGCCAATTCTCTGCCTAATGAAAACGCAGAGGACGTAAAACCTGTC
GAAGCCAGATCCTTTCGCGTGAACGACTTCCAAGAGAGAGAGGCACCAGA
AAGCGAAAACGATTATCGCCCTCCGCCGTGCAAGCATTCAGCACCAGGGA
AGCAAAACTTTATCATGGTTTTCATGGGACACAGTGCTTCTTCGGCTATT
TTGTCCGAACTAAGCCAACACTCGCGGTTCTTTATCACCGTACCCGAACC
CATCGACCATCCACCTTACGAATTCAACTCCGAGCTAGGCCTCCAATACG
CTAACGACTTCTTTCAGAACTCGTCGTCGACAGGGAAAGTCGCAGGGTTT
AAGATGCGTCCATGGCACATTCTGCATGCACCAGACGAATGGAAGGCTCT
AGTGAAGAAGCACAATATTCGGTTGGTATGGCAATATAGGATCAACGTGT
TCAAACAAGCCGTAGGAGAGTACACGGCTAAGTACATGAACGACAGCTCA
GCAATTGAAGGAATTGATCACACAATGTCCGAAGAGGATCGCTGCAAAAT
TGGTGTGGGATGTCAGTTTCGAATAGATAATGTAACGCAACTCCATGGCC
TCATGGTCAACTTCATCGAAAACAACAGACAAATCAAGGATGCCGTGCAG
CTTCTCTCAGATTCAAGTGAAGAAGAGCAATGTGTGATTCCGATAACATA
CGAAGATTACCTCCATAATAGGAAAACTGCCATGCACAAGCTTTTGGCTT
TTCTAGATGTTCAATTTGAAGACCATTCGCCGTACAGGAAGAAAGCCACC
AGCGACAACATGTGCTACGCACTCCTAAACTTCCACAATGACATATGCGA
CGCCTTTTTCAGTTGTTCTAAATGGAGATCGATGCTGCATGATCCTCGAA
ACTCCTGCACATGCCCTTTATCAAAAGGCTTAGGGACAAGTTCGGGCTTA
TTTTGTCCGGAATCCAGTTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:719255..720475+

>Ggra5191.t1 ID=Ggra5191.t1|Name=Ggra5191.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000069_pilon:719255..720475+ (Gracilaria gracilis GNS1m male)
ATGACGGGTTTTTTACCTGAGAGCAATCGTTCCAAACTGGCGGTCCAAAG
TGTGAATCCCGTCCGCGTTGCATCAATACTTTTCGCGCTATTCGTCGTCC
TCATGACATTGCGAGATTCTGGAACGCGTGTGGAAAGCGCCTTAGGCCAT
TCGGAAAGCAACAATATTCCTTTACGCTCGGATGACATGAAAACTGCGTC
CTCTGGGTTCGAAAACATGGCAAAGGATAGCATGGAAAACCATAAAGCGG
ACAACGCCAATTCTCTGCCTAATGAAAACGCAGAGGACGTAAAACCTGTC
GAAGCCAGATCCTTTCGCGTGAACGACTTCCAAGAGAGAGAGGCACCAGA
AAGCGAAAACGATTATCGCCCTCCGCCGTGCAAGCATTCAGCACCAGGGA
AGCAAAACTTTATCATGGTTTTCATGGGACACAGTGCTTCTTCGGCTATT
TTGTCCGAACTAAGCCAACACTCGCGGTTCTTTATCACCGTACCCGAACC
CATCGACCATCCACCTTACGAATTCAACTCCGAGCTAGGCCTCCAATACG
CTAACGACTTCTTTCAGAACTCGTCGTCGACAGGGAAAGTCGCAGGGTTT
AAGATGCGTCCATGGCACATTCTGCATGCACCAGACGAATGGAAGGCTCT
AGTGAAGAAGCACAATATTCGGTTGGTATGGCAATATAGGATCAACGTGT
TCAAACAAGCCGTAGGAGAGTACACGGCTAAGTACATGAACGACAGCTCA
GCAATTGAAGGAATTGATCACACAATGTCCGAAGAGGATCGCTGCAAAAT
TGGTGTGGGATGTCAGTTTCGAATAGATAATGTAACGCAACTCCATGGCC
TCATGGTCAACTTCATCGAAAACAACAGACAAATCAAGGATGCCGTGCAG
CTTCTCTCAGATTCAAGTGAAGAAGAGCAATGTGTGATTCCGATAACATA
CGAAGATTACCTCCATAATAGGAAAACTGCCATGCACAAGCTTTTGGCTT
TTCTAGATGTTCAATTTGAAGACCATTCGCCGTACAGGAAGAAAGCCACC
AGCGACAACATGTGCTACGCACTCCTAAACTTCCACAATGACATATGCGA
CGCCTTTTTCAGTTGTTCTAAATGGAGATCGATGCTGCATGATCCTCGAA
ACTCCTGCACATGCCCTTTATCAAAAGGCTTAGGGACAAGTTCGGGCTTA
TTTTGTCCGGAATCCAGTTGA