Ggra5190.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5190.t1
Unique Name	Ggra5190.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:716367..718373 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4432.XP_010278965.1
PFAMs	EFG_C,GTP_EFTU,GTP_EFTU_D2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K06207
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009409,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031647,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050821,GO:0050896,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0090304,GO:1901360
Evalue	6.87e-227
EggNOG OGs	COG0481@1\|root,KOG0462@2759\|Eukaryota,37K2D@33090\|Viridiplantae,3GBUJ@35493\|Streptophyta
Description	Translation factor GUF1 homolog
COG category	J
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5190	Ggra5190	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 716367..718373 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5190.t1.start1	Ggra5190.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 716367..716369 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5190.t1.CDS1	Ggra5190.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 716367..718373 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5190.t1.exon1	Ggra5190.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 716367..718373 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5190.t1.stop1	Ggra5190.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 718371..718373 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5190.t1	Ggra5190.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 716367..718373 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:716367..718373+
coding sequence from alignment at tig00000069_pilon:716367..718373+

mRNA sequence

>Ggra5190.t1 ID=Ggra5190.t1|Name=Ggra5190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp
MLVESSAFCPSTLLPNLRPAARYSSRLNVSSFRPRWVPANRSTTLNQPNF
LTTKCVATGSISAPAESPSLTKRDDVVTVAFVAHIDHGKSSMCDALLKGA
ECFRENEHVEERVMDGMDLEKERGITINASAASLVYNDVNVQILDTPGHA
DFGGEVERVLNMADGVLLLVDSVEGPKPQTRFVLKKAIELNKKISLIINK
MDRPQARPDYVVDSTFDLMAELGATDEQMDFDIAYASAINGQSSSEPDNL
EDNMDAVFDLILKFPRPEVALDAPLQLQVNNVTYDEFKGRLVSGRINAGV
LTKGQSVVVCHPEKDDIRGKVAEILVYDKLGRASVEQGKAGDIVMFSGLA
KFEIGDTICSPDSVNPLPPISVEEPTVRMSFMVNTSEFAGREGKYVTSRN
IRDRLDKELERNVGLKLDMERSSPESLEVCGRGALHLTILIETMRREGFE
LMIGPPTVITKQIEGAKHEPYEQFEVEVPEEYMGSVVDLLGRRKGEMINM
SGANSENMASVTYLMPTRGLLGVKNALLTATRGTAVMNSQFEGYRPFAGE
MESKENGSLTAYETGKATAYGLEAAQGRGRLLIKPGEKVYKNQICGIHQR
PGDLAVNICKLKALTNYRSATKEVKSGMQGLLEFSLDDAIEYIGHDEVVE
VTPESVRLSKRASSKKKK*

spliced messenger RNA

>Ggra5190.t1 ID=Ggra5190.t1|Name=Ggra5190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000069_pilon:716367..718373+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGTCGAATCGTCAGCGTTCTGTCCGAGCACCTTGTTGCCCAACCT
GCGACCGGCAGCACGCTATTCATCGCGCCTAAACGTATCATCCTTCCGTC
CGAGATGGGTGCCAGCGAATAGGTCAACCACGCTCAATCAGCCCAACTTT
CTGACCACCAAATGTGTAGCGACGGGAAGCATTTCAGCTCCTGCCGAATC
ACCTTCGCTCACAAAGCGGGACGACGTTGTCACAGTCGCGTTCGTGGCAC
ATATCGATCATGGGAAATCTTCCATGTGTGATGCGTTACTGAAGGGCGCA
GAGTGTTTCAGAGAGAATGAACATGTGGAAGAACGCGTTATGGATGGTAT
GGACCTCGAGAAGGAACGCGGCATTACCATCAATGCCAGCGCTGCGAGTC
TGGTGTACAATGATGTCAATGTTCAGATTTTGGATACCCCTGGACATGCC
GATTTTGGCGGCGAGGTCGAGCGCGTTCTTAATATGGCTGACGGCGTGCT
GTTGCTGGTTGACTCTGTTGAGGGACCGAAGCCGCAAACTCGCTTTGTGT
TGAAGAAGGCTATTGAACTAAATAAGAAAATCTCCCTCATTATTAACAAG
ATGGATCGGCCCCAGGCACGTCCAGACTATGTCGTCGATTCTACCTTCGA
TCTTATGGCTGAACTGGGTGCCACTGATGAGCAGATGGATTTTGATATTG
CCTATGCTTCTGCCATTAATGGTCAATCAAGCTCTGAGCCAGACAATTTG
GAGGATAATATGGATGCTGTCTTTGACCTCATTCTTAAATTTCCGAGACC
AGAGGTTGCCCTTGATGCTCCGTTGCAGCTACAGGTCAACAATGTCACAT
ACGATGAGTTTAAGGGACGCCTTGTATCTGGAAGGATCAACGCGGGCGTC
CTTACGAAGGGGCAGTCAGTTGTTGTATGCCACCCTGAAAAGGATGACAT
TCGTGGCAAGGTCGCCGAAATTCTTGTATACGACAAGCTTGGAAGAGCGT
CAGTTGAGCAGGGCAAAGCTGGAGATATCGTCATGTTCTCCGGCCTTGCC
AAGTTCGAGATTGGAGATACAATTTGTTCACCAGATTCCGTAAATCCGCT
ACCGCCTATTTCCGTTGAAGAACCTACTGTTCGCATGTCGTTCATGGTAA
ACACTTCGGAATTTGCCGGACGGGAAGGTAAGTATGTCACCTCTCGAAAT
ATTCGAGATAGGTTGGATAAAGAACTCGAACGAAACGTTGGATTGAAGCT
GGATATGGAACGATCTTCTCCTGAAAGTTTGGAGGTTTGTGGACGTGGGG
CGCTTCATCTTACTATACTTATTGAAACTATGAGGAGAGAAGGTTTTGAA
CTCATGATTGGACCTCCAACTGTTATTACTAAGCAGATAGAGGGTGCCAA
ACACGAACCTTACGAACAGTTCGAAGTTGAAGTTCCAGAAGAATATATGG
GGTCTGTTGTTGATTTGCTTGGTCGCCGAAAGGGCGAAATGATTAACATG
TCTGGTGCTAACTCTGAGAATATGGCTAGTGTCACGTATCTAATGCCTAC
AAGAGGTCTGCTCGGTGTGAAGAATGCTCTACTGACAGCGACCAGAGGTA
CGGCTGTGATGAACTCTCAGTTCGAGGGGTATCGTCCGTTTGCGGGAGAG
ATGGAGAGTAAGGAGAACGGCAGCCTAACCGCTTACGAAACTGGTAAGGC
GACCGCGTATGGACTGGAGGCGGCGCAGGGTCGTGGCCGTCTTCTTATTA
AGCCTGGTGAAAAGGTGTACAAGAATCAAATATGTGGTATTCATCAACGT
CCTGGTGATTTGGCGGTGAACATTTGCAAGCTTAAGGCGCTTACGAACTA
TCGGTCGGCTACGAAGGAAGTTAAGAGCGGTATGCAGGGCTTGTTGGAGT
TTTCGCTCGATGATGCCATCGAGTATATTGGGCATGATGAAGTGGTTGAG
GTTACTCCGGAAAGTGTTAGATTGTCTAAGAGAGCCTCTTCGAAGAAGAA
GAAGTAA

protein sequence of Ggra5190.t1

>Ggra5190.t1 ID=Ggra5190.t1|Name=Ggra5190.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=669bp
MLVESSAFCPSTLLPNLRPAARYSSRLNVSSFRPRWVPANRSTTLNQPNF
LTTKCVATGSISAPAESPSLTKRDDVVTVAFVAHIDHGKSSMCDALLKGA
ECFRENEHVEERVMDGMDLEKERGITINASAASLVYNDVNVQILDTPGHA
DFGGEVERVLNMADGVLLLVDSVEGPKPQTRFVLKKAIELNKKISLIINK
MDRPQARPDYVVDSTFDLMAELGATDEQMDFDIAYASAINGQSSSEPDNL
EDNMDAVFDLILKFPRPEVALDAPLQLQVNNVTYDEFKGRLVSGRINAGV
LTKGQSVVVCHPEKDDIRGKVAEILVYDKLGRASVEQGKAGDIVMFSGLA
KFEIGDTICSPDSVNPLPPISVEEPTVRMSFMVNTSEFAGREGKYVTSRN
IRDRLDKELERNVGLKLDMERSSPESLEVCGRGALHLTILIETMRREGFE
LMIGPPTVITKQIEGAKHEPYEQFEVEVPEEYMGSVVDLLGRRKGEMINM
SGANSENMASVTYLMPTRGLLGVKNALLTATRGTAVMNSQFEGYRPFAGE
MESKENGSLTAYETGKATAYGLEAAQGRGRLLIKPGEKVYKNQICGIHQR
PGDLAVNICKLKALTNYRSATKEVKSGMQGLLEFSLDDAIEYIGHDEVVE
VTPESVRLSKRASSKKKK*

mRNA from alignment at tig00000069_pilon:716367..718373+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5190.t1 ID=Ggra5190.t1|Name=Ggra5190.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000069_pilon:716367..718373+ (Gracilaria gracilis GNS1m male)
ATGCTTGTCGAATCGTCAGCGTTCTGTCCGAGCACCTTGTTGCCCAACCT
GCGACCGGCAGCACGCTATTCATCGCGCCTAAACGTATCATCCTTCCGTC
CGAGATGGGTGCCAGCGAATAGGTCAACCACGCTCAATCAGCCCAACTTT
CTGACCACCAAATGTGTAGCGACGGGAAGCATTTCAGCTCCTGCCGAATC
ACCTTCGCTCACAAAGCGGGACGACGTTGTCACAGTCGCGTTCGTGGCAC
ATATCGATCATGGGAAATCTTCCATGTGTGATGCGTTACTGAAGGGCGCA
GAGTGTTTCAGAGAGAATGAACATGTGGAAGAACGCGTTATGGATGGTAT
GGACCTCGAGAAGGAACGCGGCATTACCATCAATGCCAGCGCTGCGAGTC
TGGTGTACAATGATGTCAATGTTCAGATTTTGGATACCCCTGGACATGCC
GATTTTGGCGGCGAGGTCGAGCGCGTTCTTAATATGGCTGACGGCGTGCT
GTTGCTGGTTGACTCTGTTGAGGGACCGAAGCCGCAAACTCGCTTTGTGT
TGAAGAAGGCTATTGAACTAAATAAGAAAATCTCCCTCATTATTAACAAG
ATGGATCGGCCCCAGGCACGTCCAGACTATGTCGTCGATTCTACCTTCGA
TCTTATGGCTGAACTGGGTGCCACTGATGAGCAGATGGATTTTGATATTG
CCTATGCTTCTGCCATTAATGGTCAATCAAGCTCTGAGCCAGACAATTTG
GAGGATAATATGGATGCTGTCTTTGACCTCATTCTTAAATTTCCGAGACC
AGAGGTTGCCCTTGATGCTCCGTTGCAGCTACAGGTCAACAATGTCACAT
ACGATGAGTTTAAGGGACGCCTTGTATCTGGAAGGATCAACGCGGGCGTC
CTTACGAAGGGGCAGTCAGTTGTTGTATGCCACCCTGAAAAGGATGACAT
TCGTGGCAAGGTCGCCGAAATTCTTGTATACGACAAGCTTGGAAGAGCGT
CAGTTGAGCAGGGCAAAGCTGGAGATATCGTCATGTTCTCCGGCCTTGCC
AAGTTCGAGATTGGAGATACAATTTGTTCACCAGATTCCGTAAATCCGCT
ACCGCCTATTTCCGTTGAAGAACCTACTGTTCGCATGTCGTTCATGGTAA
ACACTTCGGAATTTGCCGGACGGGAAGGTAAGTATGTCACCTCTCGAAAT
ATTCGAGATAGGTTGGATAAAGAACTCGAACGAAACGTTGGATTGAAGCT
GGATATGGAACGATCTTCTCCTGAAAGTTTGGAGGTTTGTGGACGTGGGG
CGCTTCATCTTACTATACTTATTGAAACTATGAGGAGAGAAGGTTTTGAA
CTCATGATTGGACCTCCAACTGTTATTACTAAGCAGATAGAGGGTGCCAA
ACACGAACCTTACGAACAGTTCGAAGTTGAAGTTCCAGAAGAATATATGG
GGTCTGTTGTTGATTTGCTTGGTCGCCGAAAGGGCGAAATGATTAACATG
TCTGGTGCTAACTCTGAGAATATGGCTAGTGTCACGTATCTAATGCCTAC
AAGAGGTCTGCTCGGTGTGAAGAATGCTCTACTGACAGCGACCAGAGGTA
CGGCTGTGATGAACTCTCAGTTCGAGGGGTATCGTCCGTTTGCGGGAGAG
ATGGAGAGTAAGGAGAACGGCAGCCTAACCGCTTACGAAACTGGTAAGGC
GACCGCGTATGGACTGGAGGCGGCGCAGGGTCGTGGCCGTCTTCTTATTA
AGCCTGGTGAAAAGGTGTACAAGAATCAAATATGTGGTATTCATCAACGT
CCTGGTGATTTGGCGGTGAACATTTGCAAGCTTAAGGCGCTTACGAACTA
TCGGTCGGCTACGAAGGAAGTTAAGAGCGGTATGCAGGGCTTGTTGGAGT
TTTCGCTCGATGATGCCATCGAGTATATTGGGCATGATGAAGTGGTTGAG
GTTACTCCGGAAAGTGTTAGATTGTCTAAGAGAGCCTCTTCGAAGAAGAA
GAAGTAA

Coding sequence (CDS) from alignment at tig00000069_pilon:716367..718373+

>Ggra5190.t1 ID=Ggra5190.t1|Name=Ggra5190.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2007bp|location=Sequence derived from alignment at tig00000069_pilon:716367..718373+ (Gracilaria gracilis GNS1m male)
ATGCTTGTCGAATCGTCAGCGTTCTGTCCGAGCACCTTGTTGCCCAACCT
GCGACCGGCAGCACGCTATTCATCGCGCCTAAACGTATCATCCTTCCGTC
CGAGATGGGTGCCAGCGAATAGGTCAACCACGCTCAATCAGCCCAACTTT
CTGACCACCAAATGTGTAGCGACGGGAAGCATTTCAGCTCCTGCCGAATC
ACCTTCGCTCACAAAGCGGGACGACGTTGTCACAGTCGCGTTCGTGGCAC
ATATCGATCATGGGAAATCTTCCATGTGTGATGCGTTACTGAAGGGCGCA
GAGTGTTTCAGAGAGAATGAACATGTGGAAGAACGCGTTATGGATGGTAT
GGACCTCGAGAAGGAACGCGGCATTACCATCAATGCCAGCGCTGCGAGTC
TGGTGTACAATGATGTCAATGTTCAGATTTTGGATACCCCTGGACATGCC
GATTTTGGCGGCGAGGTCGAGCGCGTTCTTAATATGGCTGACGGCGTGCT
GTTGCTGGTTGACTCTGTTGAGGGACCGAAGCCGCAAACTCGCTTTGTGT
TGAAGAAGGCTATTGAACTAAATAAGAAAATCTCCCTCATTATTAACAAG
ATGGATCGGCCCCAGGCACGTCCAGACTATGTCGTCGATTCTACCTTCGA
TCTTATGGCTGAACTGGGTGCCACTGATGAGCAGATGGATTTTGATATTG
CCTATGCTTCTGCCATTAATGGTCAATCAAGCTCTGAGCCAGACAATTTG
GAGGATAATATGGATGCTGTCTTTGACCTCATTCTTAAATTTCCGAGACC
AGAGGTTGCCCTTGATGCTCCGTTGCAGCTACAGGTCAACAATGTCACAT
ACGATGAGTTTAAGGGACGCCTTGTATCTGGAAGGATCAACGCGGGCGTC
CTTACGAAGGGGCAGTCAGTTGTTGTATGCCACCCTGAAAAGGATGACAT
TCGTGGCAAGGTCGCCGAAATTCTTGTATACGACAAGCTTGGAAGAGCGT
CAGTTGAGCAGGGCAAAGCTGGAGATATCGTCATGTTCTCCGGCCTTGCC
AAGTTCGAGATTGGAGATACAATTTGTTCACCAGATTCCGTAAATCCGCT
ACCGCCTATTTCCGTTGAAGAACCTACTGTTCGCATGTCGTTCATGGTAA
ACACTTCGGAATTTGCCGGACGGGAAGGTAAGTATGTCACCTCTCGAAAT
ATTCGAGATAGGTTGGATAAAGAACTCGAACGAAACGTTGGATTGAAGCT
GGATATGGAACGATCTTCTCCTGAAAGTTTGGAGGTTTGTGGACGTGGGG
CGCTTCATCTTACTATACTTATTGAAACTATGAGGAGAGAAGGTTTTGAA
CTCATGATTGGACCTCCAACTGTTATTACTAAGCAGATAGAGGGTGCCAA
ACACGAACCTTACGAACAGTTCGAAGTTGAAGTTCCAGAAGAATATATGG
GGTCTGTTGTTGATTTGCTTGGTCGCCGAAAGGGCGAAATGATTAACATG
TCTGGTGCTAACTCTGAGAATATGGCTAGTGTCACGTATCTAATGCCTAC
AAGAGGTCTGCTCGGTGTGAAGAATGCTCTACTGACAGCGACCAGAGGTA
CGGCTGTGATGAACTCTCAGTTCGAGGGGTATCGTCCGTTTGCGGGAGAG
ATGGAGAGTAAGGAGAACGGCAGCCTAACCGCTTACGAAACTGGTAAGGC
GACCGCGTATGGACTGGAGGCGGCGCAGGGTCGTGGCCGTCTTCTTATTA
AGCCTGGTGAAAAGGTGTACAAGAATCAAATATGTGGTATTCATCAACGT
CCTGGTGATTTGGCGGTGAACATTTGCAAGCTTAAGGCGCTTACGAACTA
TCGGTCGGCTACGAAGGAAGTTAAGAGCGGTATGCAGGGCTTGTTGGAGT
TTTCGCTCGATGATGCCATCGAGTATATTGGGCATGATGAAGTGGTTGAG
GTTACTCCGGAAAGTGTTAGATTGTCTAAGAGAGCCTCTTCGAAGAAGAA
GAAGTAA