Ggra5186.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5186.t1
Unique NameGgra5186.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:707035..707864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog886379.AEWI01000018_gene1250
Preferred namepncA
PFAMsIsochorismatase
Max annot lvl976|Bacteroidetes
KEGG rclassRC00100
KEGG koko:K08281
KEGG ReactionR01268
KEGG Pathwayko00760,ko01100,map00760,map01100
Evalue5.32e-63
EggNOG OGsCOG1335@1|root,COG1335@2|Bacteria,4NKPP@976|Bacteroidetes,2G21T@200643|Bacteroidia,3XJ01@558415|Marinilabiliaceae
EC3.5.1.19
DescriptionIsochorismatase family
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5186Ggra5186Gracilaria gracilis GNS1m malegenetig00000069_pilon 707035..707864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1Ggra5186.t1Gracilaria gracilis GNS1m malepolypeptidetig00000069_pilon 707035..707864 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1.start1Ggra5186.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000069_pilon 707035..707037 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1.CDS1Ggra5186.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000069_pilon 707035..707586 +
Ggra5186.t1.CDS2Ggra5186.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000069_pilon 707775..707864 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1.exon1Ggra5186.t1.exon1Gracilaria gracilis GNS1m maleexontig00000069_pilon 707035..707586 +
Ggra5186.t1.exon2Ggra5186.t1.exon2Gracilaria gracilis GNS1m maleexontig00000069_pilon 707775..707864 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1.intron1Ggra5186.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000069_pilon 707587..707774 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5186.t1.stop1Ggra5186.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000069_pilon 707862..707864 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5186.t1 ID=Ggra5186.t1|Name=Ggra5186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MNSPISALVIVDVQEDFLPTGNLPVPHGDEIIPVINQLLSNSHFGGGVYV
TKDWHPANHMSFASNHSGTKPFDKIVVEIDGVEHSQTLWPDHCVENTSGA
QVSPKLHIPDNAVTVLKGTDARYDSYSAFYDNAKKSQTELDTLLKKANVR
TVYVCGLALDVCVSFTVMDAITLGYDTILISDACRGLSSESNDQAISKMK
AAGAKIVTAADIE*
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spliced messenger RNA

>Ggra5186.t1 ID=Ggra5186.t1|Name=Ggra5186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000069_pilon:707035..707864+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCTCCGATAAGCGCTCTTGTCATTGTTGACGTTCAGGAAGACTT
TCTTCCAACGGGCAACCTTCCAGTTCCGCATGGCGACGAGATTATCCCTG
TGATAAATCAGCTTCTTAGCAACAGCCACTTCGGAGGTGGTGTGTACGTA
ACCAAGGATTGGCACCCTGCCAACCACATGTCCTTCGCCAGCAATCACTC
CGGAACAAAGCCGTTCGACAAGATCGTGGTCGAAATCGACGGCGTCGAAC
ACTCGCAAACTCTCTGGCCGGATCACTGCGTAGAAAACACCAGTGGGGCA
CAAGTTTCACCGAAACTGCACATCCCTGACAACGCCGTCACAGTCCTAAA
GGGTACGGATGCTCGTTACGATTCTTACTCCGCGTTTTATGACAATGCCA
AGAAATCACAAACCGAACTTGACACTCTGTTGAAGAAGGCAAACGTACGC
ACGGTGTATGTATGCGGGCTAGCGCTCGATGTGTGTGTGTCATTCACCGT
GATGGATGCCATCACGCTCGGTTATGACACTATACTTATATCAGATGCAT
GCAGAGGTTTATCATCCGAATCAAACGACCAAGCTATCTCCAAAATGAAG
GCTGCTGGCGCCAAGATTGTGACAGCCGCAGACATAGAGTGA
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protein sequence of Ggra5186.t1

>Ggra5186.t1 ID=Ggra5186.t1|Name=Ggra5186.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MNSPISALVIVDVQEDFLPTGNLPVPHGDEIIPVINQLLSNSHFGGGVYV
TKDWHPANHMSFASNHSGTKPFDKIVVEIDGVEHSQTLWPDHCVENTSGA
QVSPKLHIPDNAVTVLKGTDARYDSYSAFYDNAKKSQTELDTLLKKANVR
TVYVCGLALDVCVSFTVMDAITLGYDTILISDACRGLSSESNDQAISKMK
AAGAKIVTAADIE*
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mRNA from alignment at tig00000069_pilon:707035..707864+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5186.t1 ID=Ggra5186.t1|Name=Ggra5186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=830bp|location=Sequence derived from alignment at tig00000069_pilon:707035..707864+ (Gracilaria gracilis GNS1m male)
ATGAACTCTCCGATAAGCGCTCTTGTCATTGTTGACGTTCAGGAAGACTT
TCTTCCAACGGGCAACCTTCCAGTTCCGCATGGCGACGAGATTATCCCTG
TGATAAATCAGCTTCTTAGCAACAGCCACTTCGGAGGTGGTGTGTACGTA
ACCAAGGATTGGCACCCTGCCAACCACATGTCCTTCGCCAGCAATCACTC
CGGAACAAAGCCGTTCGACAAGATCGTGGTCGAAATCGACGGCGTCGAAC
ACTCGCAAACTCTCTGGCCGGATCACTGCGTAGAAAACACCAGTGGGGCA
CAAGTTTCACCGAAACTGCACATCCCTGACAACGCCGTCACAGTCCTAAA
GGGTACGGATGCTCGTTACGATTCTTACTCCGCGTTTTATGACAATGCCA
AGAAATCACAAACCGAACTTGACACTCTGTTGAAGAAGGCAAACGTACGC
ACGGTGTATGTATGCGGGCTAGCGCTCGATGTGTGTGTGTCATTCACCGT
GATGGATGCCATCACGCTCGGTTATGACACTATACTTATATCAGATGCAT
GCGTAAGTTCCTCCTTTCCCGATATTGCACGAATACATACCGTCGAATAG
CAGCACGCTTGCCCGTACAGCTGTACATCGCAGGTACAGCTCGCCAAGAG
CGTAACGCGCACTTGTGCCGTTCCAATCAAATTTACGACCATCATAAGCA
CGAAATCTAACTAATGTGAACATCAATCCCCTAACACCAGAGAGGTTTAT
CATCCGAATCAAACGACCAAGCTATCTCCAAAATGAAGGCTGCTGGCGCC
AAGATTGTGACAGCCGCAGACATAGAGTGA
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Coding sequence (CDS) from alignment at tig00000069_pilon:707035..707864+

>Ggra5186.t1 ID=Ggra5186.t1|Name=Ggra5186.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000069_pilon:707035..707864+ (Gracilaria gracilis GNS1m male)
ATGAACTCTCCGATAAGCGCTCTTGTCATTGTTGACGTTCAGGAAGACTT
TCTTCCAACGGGCAACCTTCCAGTTCCGCATGGCGACGAGATTATCCCTG
TGATAAATCAGCTTCTTAGCAACAGCCACTTCGGAGGTGGTGTGTACGTA
ACCAAGGATTGGCACCCTGCCAACCACATGTCCTTCGCCAGCAATCACTC
CGGAACAAAGCCGTTCGACAAGATCGTGGTCGAAATCGACGGCGTCGAAC
ACTCGCAAACTCTCTGGCCGGATCACTGCGTAGAAAACACCAGTGGGGCA
CAAGTTTCACCGAAACTGCACATCCCTGACAACGCCGTCACAGTCCTAAA
GGGTACGGATGCTCGTTACGATTCTTACTCCGCGTTTTATGACAATGCCA
AGAAATCACAAACCGAACTTGACACTCTGTTGAAGAAGGCAAACGTACGC
ACGGTGTATGTATGCGGGCTAGCGCTCGATGTGTGTGTGTCATTCACCGT
GATGGATGCCATCACGCTCGGTTATGACACTATACTTATATCAGATGCAT
GCAGAGGTTTATCATCCGAATCAAACGACCAAGCTATCTCCAAAATGAAG
GCTGCTGGCGCCAAGATTGTGACAGCCGCAGACATAGAGTGA
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