Ggra5185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5185.t1
Unique Name	Ggra5185.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	581

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:703709..705451 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10224.XP_006823243.1
PFAMs	Nucleotid_trans
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11714
Evalue	5.71e-22
EggNOG OGs	2CZA0@1\|root,2S9AH@2759\|Eukaryota,3ABW2@33154\|Opisthokonta,3BVK1@33208\|Metazoa,3DCNX@33213\|Bilateria
Description	Nucleotide-diphospho-sugar transferase
COG category	S
CAZy	GT77
BRITE	ko00000,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5185	Ggra5185	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 703709..705451 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5185.t1.stop1	Ggra5185.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 703709..703711 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5185.t1.CDS1	Ggra5185.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 703709..705451 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5185.t1.exon1	Ggra5185.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 703709..705451 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5185.t1.start1	Ggra5185.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 705449..705451 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5185.t1	Ggra5185.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 703709..705451 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:703709..705451-
coding sequence from alignment at tig00000069_pilon:703709..705451-

mRNA sequence

>Ggra5185.t1 ID=Ggra5185.t1|Name=Ggra5185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=581bp
MTGLSKLNVASSTCVHRIYVTTEHDFKTLSHFHGCCSALGNGCAVEVHLH
NGARMWGDLSFRDVASGTKIIFLRDGITFTDRAFSWIQLAHEATQRLYAD
GGRHDIGGAAIGCFGEGGYSPWWSMTVGSLNTTCAFSPIRTYGPSVWQFF
YHWFANRRREWVSWPHTWDSLNSVPEFWKGTNKNSRDRRLIEFGEVVGKD
YSFVNNPYLTWERWFPRWASNYTLRVLTAESNLGLSLPGLRESTTSLLQA
ISNDASLGLYSTSYGDVLSVGRVWYEPVDGDLGAGYFNALKKIVSQKPGM
VSLTMVNHKFMQLTRSWLCNVQGGGFAPPNIIWIVLDEESKQQVKELGIG
QTIDILDALTADNMDSQNIIYGQPAYWKLMLMRTRLIRDLLDRGIDVFLF
ETDQVWLRDPFDFINKELEAGSDMVGTLDTQHNVAGNTIMLRSILPTRRM
WSEVYTRFKADYDLKEVEKMKKHSSTFVKHDQHHLSDLLLFNPSFIRDFP
VALGLLNAQLFVGGSWYSGMYKTIESRHPVIINNNFISGTEKKKTRAAAF
GHWFLRLDNKTCDMGTVHEALRYKFKRYPY*

spliced messenger RNA

>Ggra5185.t1 ID=Ggra5185.t1|Name=Ggra5185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1743bp|location=Sequence derived from alignment at tig00000069_pilon:703709..705451- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGGTCTATCAAAGCTCAATGTTGCAAGCAGCACATGCGTGCATCG
AATTTATGTTACCACAGAACATGACTTTAAAACGTTAAGCCATTTTCATG
GGTGCTGTTCTGCTCTCGGCAATGGATGTGCCGTGGAAGTTCATTTGCAC
AACGGCGCTCGAATGTGGGGAGACCTTTCTTTTCGCGATGTTGCGAGCGG
TACCAAGATTATATTCTTGCGTGATGGCATAACATTTACGGATCGAGCCT
TTTCCTGGATACAGTTAGCCCACGAAGCCACGCAACGACTTTATGCGGAT
GGCGGACGGCATGACATCGGCGGAGCAGCAATTGGGTGCTTCGGTGAGGG
TGGCTATTCTCCTTGGTGGTCGATGACCGTAGGTTCTTTGAATACGACGT
GTGCGTTTTCCCCCATTCGAACGTATGGGCCTAGTGTGTGGCAATTTTTC
TATCACTGGTTTGCGAACCGTAGAAGAGAGTGGGTGTCATGGCCACACAC
ATGGGACAGCCTCAATTCAGTCCCTGAGTTTTGGAAGGGAACCAACAAGA
ATTCCAGGGATAGACGCCTGATTGAGTTTGGAGAAGTGGTTGGTAAAGAC
TATTCGTTCGTCAACAATCCGTATCTCACATGGGAGCGATGGTTTCCGCG
ATGGGCTAGCAACTATACACTTCGGGTTTTGACAGCGGAAAGCAACCTAG
GACTGTCACTACCAGGCCTGCGTGAGTCCACTACTTCGCTATTACAAGCT
ATTTCTAATGATGCCAGCCTTGGTCTCTATTCCACATCCTACGGAGATGT
TTTGAGCGTCGGCAGAGTTTGGTACGAGCCTGTTGATGGCGACCTGGGAG
CTGGATATTTTAATGCTTTGAAGAAGATCGTCAGCCAGAAACCTGGAATG
GTGTCCTTGACAATGGTGAATCACAAGTTCATGCAACTAACTCGGAGCTG
GCTCTGTAACGTCCAAGGTGGAGGATTTGCTCCTCCAAATATCATTTGGA
TCGTCCTGGATGAGGAGTCAAAGCAGCAAGTGAAAGAATTGGGAATCGGC
CAAACGATTGACATCTTGGATGCTCTGACCGCAGACAACATGGATTCGCA
GAACATCATATACGGTCAACCAGCGTACTGGAAGCTTATGCTAATGCGTA
CTCGTCTCATTCGCGACCTGCTTGATCGCGGCATTGATGTGTTTCTATTT
GAAACAGATCAGGTCTGGTTGCGGGACCCGTTCGACTTTATCAATAAGGA
ACTCGAAGCGGGATCAGATATGGTTGGTACGCTTGACACGCAGCATAATG
TCGCGGGAAACACAATAATGTTGAGATCGATTCTCCCGACTCGTCGCATG
TGGAGTGAAGTGTACACCCGATTCAAAGCTGATTACGACTTAAAAGAGGT
TGAGAAGATGAAGAAGCATAGCTCGACTTTCGTTAAGCATGACCAGCACC
ATCTAAGCGACCTTCTTCTTTTCAACCCTTCATTCATTCGAGACTTTCCC
GTAGCACTCGGGCTTCTCAACGCTCAACTATTTGTCGGGGGTTCATGGTA
TTCAGGAATGTACAAAACAATAGAGTCGAGGCATCCAGTGATCATCAACA
ACAACTTCATTTCAGGAACAGAGAAGAAAAAAACAAGAGCCGCAGCGTTC
GGTCATTGGTTCCTGAGGTTAGACAACAAGACGTGTGATATGGGAACTGT
TCATGAGGCCCTGCGGTATAAGTTCAAGAGATATCCGTATTAG

protein sequence of Ggra5185.t1

>Ggra5185.t1 ID=Ggra5185.t1|Name=Ggra5185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=581bp
MTGLSKLNVASSTCVHRIYVTTEHDFKTLSHFHGCCSALGNGCAVEVHLH
NGARMWGDLSFRDVASGTKIIFLRDGITFTDRAFSWIQLAHEATQRLYAD
GGRHDIGGAAIGCFGEGGYSPWWSMTVGSLNTTCAFSPIRTYGPSVWQFF
YHWFANRRREWVSWPHTWDSLNSVPEFWKGTNKNSRDRRLIEFGEVVGKD
YSFVNNPYLTWERWFPRWASNYTLRVLTAESNLGLSLPGLRESTTSLLQA
ISNDASLGLYSTSYGDVLSVGRVWYEPVDGDLGAGYFNALKKIVSQKPGM
VSLTMVNHKFMQLTRSWLCNVQGGGFAPPNIIWIVLDEESKQQVKELGIG
QTIDILDALTADNMDSQNIIYGQPAYWKLMLMRTRLIRDLLDRGIDVFLF
ETDQVWLRDPFDFINKELEAGSDMVGTLDTQHNVAGNTIMLRSILPTRRM
WSEVYTRFKADYDLKEVEKMKKHSSTFVKHDQHHLSDLLLFNPSFIRDFP
VALGLLNAQLFVGGSWYSGMYKTIESRHPVIINNNFISGTEKKKTRAAAF
GHWFLRLDNKTCDMGTVHEALRYKFKRYPY*

mRNA from alignment at tig00000069_pilon:703709..705451-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5185.t1 ID=Ggra5185.t1|Name=Ggra5185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1743bp|location=Sequence derived from alignment at tig00000069_pilon:703709..705451- (Gracilaria gracilis GNS1m male)
ATGACAGGTCTATCAAAGCTCAATGTTGCAAGCAGCACATGCGTGCATCG
AATTTATGTTACCACAGAACATGACTTTAAAACGTTAAGCCATTTTCATG
GGTGCTGTTCTGCTCTCGGCAATGGATGTGCCGTGGAAGTTCATTTGCAC
AACGGCGCTCGAATGTGGGGAGACCTTTCTTTTCGCGATGTTGCGAGCGG
TACCAAGATTATATTCTTGCGTGATGGCATAACATTTACGGATCGAGCCT
TTTCCTGGATACAGTTAGCCCACGAAGCCACGCAACGACTTTATGCGGAT
GGCGGACGGCATGACATCGGCGGAGCAGCAATTGGGTGCTTCGGTGAGGG
TGGCTATTCTCCTTGGTGGTCGATGACCGTAGGTTCTTTGAATACGACGT
GTGCGTTTTCCCCCATTCGAACGTATGGGCCTAGTGTGTGGCAATTTTTC
TATCACTGGTTTGCGAACCGTAGAAGAGAGTGGGTGTCATGGCCACACAC
ATGGGACAGCCTCAATTCAGTCCCTGAGTTTTGGAAGGGAACCAACAAGA
ATTCCAGGGATAGACGCCTGATTGAGTTTGGAGAAGTGGTTGGTAAAGAC
TATTCGTTCGTCAACAATCCGTATCTCACATGGGAGCGATGGTTTCCGCG
ATGGGCTAGCAACTATACACTTCGGGTTTTGACAGCGGAAAGCAACCTAG
GACTGTCACTACCAGGCCTGCGTGAGTCCACTACTTCGCTATTACAAGCT
ATTTCTAATGATGCCAGCCTTGGTCTCTATTCCACATCCTACGGAGATGT
TTTGAGCGTCGGCAGAGTTTGGTACGAGCCTGTTGATGGCGACCTGGGAG
CTGGATATTTTAATGCTTTGAAGAAGATCGTCAGCCAGAAACCTGGAATG
GTGTCCTTGACAATGGTGAATCACAAGTTCATGCAACTAACTCGGAGCTG
GCTCTGTAACGTCCAAGGTGGAGGATTTGCTCCTCCAAATATCATTTGGA
TCGTCCTGGATGAGGAGTCAAAGCAGCAAGTGAAAGAATTGGGAATCGGC
CAAACGATTGACATCTTGGATGCTCTGACCGCAGACAACATGGATTCGCA
GAACATCATATACGGTCAACCAGCGTACTGGAAGCTTATGCTAATGCGTA
CTCGTCTCATTCGCGACCTGCTTGATCGCGGCATTGATGTGTTTCTATTT
GAAACAGATCAGGTCTGGTTGCGGGACCCGTTCGACTTTATCAATAAGGA
ACTCGAAGCGGGATCAGATATGGTTGGTACGCTTGACACGCAGCATAATG
TCGCGGGAAACACAATAATGTTGAGATCGATTCTCCCGACTCGTCGCATG
TGGAGTGAAGTGTACACCCGATTCAAAGCTGATTACGACTTAAAAGAGGT
TGAGAAGATGAAGAAGCATAGCTCGACTTTCGTTAAGCATGACCAGCACC
ATCTAAGCGACCTTCTTCTTTTCAACCCTTCATTCATTCGAGACTTTCCC
GTAGCACTCGGGCTTCTCAACGCTCAACTATTTGTCGGGGGTTCATGGTA
TTCAGGAATGTACAAAACAATAGAGTCGAGGCATCCAGTGATCATCAACA
ACAACTTCATTTCAGGAACAGAGAAGAAAAAAACAAGAGCCGCAGCGTTC
GGTCATTGGTTCCTGAGGTTAGACAACAAGACGTGTGATATGGGAACTGT
TCATGAGGCCCTGCGGTATAAGTTCAAGAGATATCCGTATTAG

Coding sequence (CDS) from alignment at tig00000069_pilon:703709..705451-

>Ggra5185.t1 ID=Ggra5185.t1|Name=Ggra5185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1743bp|location=Sequence derived from alignment at tig00000069_pilon:703709..705451- (Gracilaria gracilis GNS1m male)
ATGACAGGTCTATCAAAGCTCAATGTTGCAAGCAGCACATGCGTGCATCG
AATTTATGTTACCACAGAACATGACTTTAAAACGTTAAGCCATTTTCATG
GGTGCTGTTCTGCTCTCGGCAATGGATGTGCCGTGGAAGTTCATTTGCAC
AACGGCGCTCGAATGTGGGGAGACCTTTCTTTTCGCGATGTTGCGAGCGG
TACCAAGATTATATTCTTGCGTGATGGCATAACATTTACGGATCGAGCCT
TTTCCTGGATACAGTTAGCCCACGAAGCCACGCAACGACTTTATGCGGAT
GGCGGACGGCATGACATCGGCGGAGCAGCAATTGGGTGCTTCGGTGAGGG
TGGCTATTCTCCTTGGTGGTCGATGACCGTAGGTTCTTTGAATACGACGT
GTGCGTTTTCCCCCATTCGAACGTATGGGCCTAGTGTGTGGCAATTTTTC
TATCACTGGTTTGCGAACCGTAGAAGAGAGTGGGTGTCATGGCCACACAC
ATGGGACAGCCTCAATTCAGTCCCTGAGTTTTGGAAGGGAACCAACAAGA
ATTCCAGGGATAGACGCCTGATTGAGTTTGGAGAAGTGGTTGGTAAAGAC
TATTCGTTCGTCAACAATCCGTATCTCACATGGGAGCGATGGTTTCCGCG
ATGGGCTAGCAACTATACACTTCGGGTTTTGACAGCGGAAAGCAACCTAG
GACTGTCACTACCAGGCCTGCGTGAGTCCACTACTTCGCTATTACAAGCT
ATTTCTAATGATGCCAGCCTTGGTCTCTATTCCACATCCTACGGAGATGT
TTTGAGCGTCGGCAGAGTTTGGTACGAGCCTGTTGATGGCGACCTGGGAG
CTGGATATTTTAATGCTTTGAAGAAGATCGTCAGCCAGAAACCTGGAATG
GTGTCCTTGACAATGGTGAATCACAAGTTCATGCAACTAACTCGGAGCTG
GCTCTGTAACGTCCAAGGTGGAGGATTTGCTCCTCCAAATATCATTTGGA
TCGTCCTGGATGAGGAGTCAAAGCAGCAAGTGAAAGAATTGGGAATCGGC
CAAACGATTGACATCTTGGATGCTCTGACCGCAGACAACATGGATTCGCA
GAACATCATATACGGTCAACCAGCGTACTGGAAGCTTATGCTAATGCGTA
CTCGTCTCATTCGCGACCTGCTTGATCGCGGCATTGATGTGTTTCTATTT
GAAACAGATCAGGTCTGGTTGCGGGACCCGTTCGACTTTATCAATAAGGA
ACTCGAAGCGGGATCAGATATGGTTGGTACGCTTGACACGCAGCATAATG
TCGCGGGAAACACAATAATGTTGAGATCGATTCTCCCGACTCGTCGCATG
TGGAGTGAAGTGTACACCCGATTCAAAGCTGATTACGACTTAAAAGAGGT
TGAGAAGATGAAGAAGCATAGCTCGACTTTCGTTAAGCATGACCAGCACC
ATCTAAGCGACCTTCTTCTTTTCAACCCTTCATTCATTCGAGACTTTCCC
GTAGCACTCGGGCTTCTCAACGCTCAACTATTTGTCGGGGGTTCATGGTA
TTCAGGAATGTACAAAACAATAGAGTCGAGGCATCCAGTGATCATCAACA
ACAACTTCATTTCAGGAACAGAGAAGAAAAAAACAAGAGCCGCAGCGTTC
GGTCATTGGTTCCTGAGGTTAGACAACAAGACGTGTGATATGGGAACTGT
TCATGAGGCCCTGCGGTATAAGTTCAAGAGATATCCGTATTAG